Wall clock time and date at job start Sun Mar 29 2020 23:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99602 * 2 1 4 4 H 1.48491 * 109.47382 * 240.00579 * 3 2 1 5 5 H 1.48507 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46829 * 120.00485 * 3 2 1 7 7 C 1.37873 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46809 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.46561 * 179.97438 * 11 10 9 13 13 C 1.47148 * 110.99564 * 170.82719 * 12 11 10 14 14 C 1.52961 * 108.64745 * 52.35721 * 13 12 11 15 15 C 1.50525 * 109.83909 * 50.35798 * 14 13 12 16 16 N 1.32646 * 119.30058 * 163.24323 * 15 14 13 17 17 C 1.31714 * 120.85695 * 179.58403 * 16 15 14 18 18 N 1.31807 * 121.73343 * 0.03804 * 17 16 15 19 19 C 1.32268 * 120.74042 * 0.08725 * 18 17 16 20 20 C 1.37954 * 121.64585 * 343.00774 * 15 14 13 21 21 C 1.46722 * 111.00070 * 293.95062 * 12 11 10 22 22 H 0.96998 * 120.00470 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47184 * 60.00723 * 9 7 2 24 24 H 1.09000 * 109.47090 * 300.00294 * 9 7 2 25 25 H 1.08996 * 109.47110 * 60.00025 * 10 9 7 26 26 H 1.09000 * 109.46920 * 299.99745 * 10 9 7 27 27 H 1.08996 * 109.47490 * 59.99982 * 11 10 9 28 28 H 1.09000 * 109.46945 * 299.99453 * 11 10 9 29 29 H 1.08997 * 109.60456 * 172.10890 * 13 12 11 30 30 H 1.09005 * 109.60448 * 292.43526 * 13 12 11 31 31 H 1.08998 * 109.40854 * 170.47240 * 14 13 12 32 32 H 1.09007 * 109.40913 * 290.31543 * 14 13 12 33 33 H 1.07995 * 119.12876 * 180.02562 * 17 16 15 34 34 H 1.08005 * 120.44257 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.32512 * 168.50850 * 21 12 11 36 36 H 1.09002 * 109.32543 * 49.05175 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6967 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4353 -6.1035 -0.0018 13 6 1.7473 -7.3858 0.2166 14 6 0.6044 -7.5057 -0.7930 15 6 1.1160 -7.2217 -2.1799 16 7 0.3909 -7.5905 -3.2275 17 6 0.8053 -7.3500 -4.4544 18 7 1.9484 -6.7386 -4.6927 19 6 2.7248 -6.3445 -3.6969 20 6 2.3200 -6.5819 -2.3903 21 6 3.1996 -6.1411 -1.2537 22 1 -0.4851 0.8400 0.0004 23 1 0.6243 -2.5567 -0.8903 24 1 0.6248 -2.5570 0.8897 25 1 2.8722 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8906 27 1 0.8542 -5.0446 -0.8913 28 1 0.8537 -5.0451 0.8886 29 1 2.4497 -8.2068 0.0733 30 1 1.3481 -7.4187 1.2304 31 1 0.1945 -8.5151 -0.7578 32 1 -0.1772 -6.7884 -0.5424 33 1 0.1924 -7.6621 -5.2870 34 1 3.6607 -5.8443 -3.8977 35 1 4.0300 -6.8394 -1.1485 36 1 3.5926 -5.1469 -1.4663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880594415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:07 Heat of formation + Delta-G solvation = 39.590390 kcal Electronic energy + Delta-G solvation = -17741.909849 eV Core-core repulsion = 15032.520838 eV Total energy + Delta-G solvation = -2709.389011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49548 -38.52350 -34.46507 -33.83110 -32.32637 -31.47808 -30.36273 -27.14446 -25.44416 -24.38505 -23.36137 -22.85942 -20.61244 -19.43257 -17.76383 -17.00310 -16.28908 -15.59260 -15.40315 -14.89052 -14.79044 -14.38139 -14.06349 -13.79578 -13.49226 -12.86332 -12.57107 -12.32141 -12.04230 -11.59602 -11.38076 -11.34751 -11.11067 -10.78306 -10.59493 -10.55320 -10.45540 -9.70172 -9.36652 -9.29243 -9.21382 -9.08074 -8.34897 -8.28496 -5.99997 -4.02539 0.84390 0.99432 3.33404 3.37770 3.40104 3.68192 3.80484 4.10054 4.16651 4.39209 4.46598 4.67495 4.76350 4.97294 5.05698 5.32132 5.35673 5.37626 5.50416 5.56701 5.61656 5.76115 5.81972 5.90328 5.97490 6.25048 6.35485 6.62444 6.67368 6.91362 7.02139 7.19013 7.23371 7.66390 7.80718 7.99604 8.02283 8.42411 9.04399 9.61626 11.11437 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.005221 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.460094 B = 5361.314118 C = 5739.054649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.049 3.951 12 N -0.524 5.524 13 C 0.052 3.948 14 C -0.112 4.112 15 C 0.181 3.819 16 N -0.521 5.521 17 C 0.286 3.714 18 N -0.523 5.523 19 C 0.155 3.845 20 C -0.209 4.209 21 C 0.094 3.906 22 H 0.261 0.739 23 H 0.011 0.989 24 H 0.016 0.984 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.091 0.909 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -16.547 -3.423 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.078 4.078 12 N -0.245 5.245 13 C -0.076 4.076 14 C -0.151 4.151 15 C 0.036 3.964 16 N -0.235 5.235 17 C -0.002 4.002 18 N -0.237 5.237 19 C -0.012 4.012 20 C -0.215 4.215 21 C -0.036 4.036 22 H 0.070 0.930 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.187 0.813 35 H 0.109 0.891 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.611 -16.637 -3.772 17.437 hybrid contribution 0.186 1.126 -0.239 1.166 sum 3.797 -15.511 -4.011 16.465 Atomic orbital electron populations 1.69954 1.06088 1.26714 1.50832 1.25028 0.94835 0.99268 0.95326 0.86659 0.79588 0.83137 0.78633 1.20267 1.21299 1.20171 1.21194 0.92992 0.91005 1.50612 0.92696 1.19054 0.94000 0.91407 0.97025 1.21670 0.99186 0.92651 1.00749 1.22402 0.94001 0.90903 1.00448 1.62689 1.26881 1.03149 1.31789 1.22300 0.94224 0.92464 0.98649 1.21135 1.00572 1.04105 0.89295 1.21219 0.89634 0.90092 0.95453 1.68338 1.34515 1.20656 0.99966 1.24867 0.90729 0.91173 0.93478 1.68382 1.06357 1.11996 1.36931 1.23209 0.98187 0.92289 0.87548 1.22067 0.98854 1.01598 0.98993 1.21140 0.94847 1.03037 0.84590 0.92955 0.97043 0.96574 0.92332 0.93548 0.95129 0.90767 0.90528 0.89113 0.88907 0.88549 0.78982 0.81324 0.89098 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.11 5.10 -26.73 -0.14 -2.24 16 11 C 0.05 0.82 3.97 -3.82 -0.02 0.81 16 12 N -0.52 -7.10 5.02 -236.26 -1.19 -8.29 16 13 C 0.05 0.57 6.02 -3.71 -0.02 0.55 16 14 C -0.11 -1.31 5.44 -27.99 -0.15 -1.46 16 15 C 0.18 2.50 5.96 -82.43 -0.49 2.01 16 16 N -0.52 -7.46 10.35 -10.96 -0.11 -7.57 16 17 C 0.29 3.75 12.28 -92.21 -1.13 2.62 16 18 N -0.52 -7.24 10.44 -14.55 -0.15 -7.39 16 19 C 0.15 1.98 10.98 -17.14 -0.19 1.79 16 20 C -0.21 -2.76 5.20 -104.69 -0.54 -3.30 16 21 C 0.09 1.15 5.48 -5.25 -0.03 1.12 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.91 6.34 -51.93 -0.33 0.58 16 27 H 0.03 0.55 5.90 -51.93 -0.31 0.24 16 28 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 29 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 1.22 7.06 -51.92 -0.37 0.86 16 33 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.17 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.33 6.04 -51.93 -0.31 1.02 16 LS Contribution 292.41 15.07 4.41 4.41 Total: -1.00 -32.14 292.41 -9.67 -41.81 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.08 Total: -2.06 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.26 Total: -11.18 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.71 Total: -49.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.14 -9.67 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880594415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.397 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds