Wall clock time and date at job start Sun Mar 29 2020 23:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99602 * 2 1 4 4 H 1.48491 * 109.47382 * 240.00579 * 3 2 1 5 5 H 1.48507 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46829 * 120.00485 * 3 2 1 7 7 C 1.37873 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46809 * 180.02562 * 10 9 7 12 12 N 1.46907 * 109.46561 * 179.97438 * 11 10 9 13 13 C 1.47148 * 110.99564 * 170.82719 * 12 11 10 14 14 C 1.52961 * 108.64745 * 52.35721 * 13 12 11 15 15 C 1.50525 * 109.83909 * 50.35798 * 14 13 12 16 16 N 1.32646 * 119.30058 * 163.24323 * 15 14 13 17 17 C 1.31714 * 120.85695 * 179.58403 * 16 15 14 18 18 N 1.31807 * 121.73343 * 0.03804 * 17 16 15 19 19 C 1.32268 * 120.74042 * 0.08725 * 18 17 16 20 20 C 1.37954 * 121.64585 * 343.00774 * 15 14 13 21 21 C 1.46722 * 111.00070 * 293.95062 * 12 11 10 22 22 H 0.96998 * 120.00470 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47184 * 60.00723 * 9 7 2 24 24 H 1.09000 * 109.47090 * 300.00294 * 9 7 2 25 25 H 1.08996 * 109.47110 * 60.00025 * 10 9 7 26 26 H 1.09000 * 109.46920 * 299.99745 * 10 9 7 27 27 H 1.08996 * 109.47490 * 59.99982 * 11 10 9 28 28 H 1.09000 * 109.46945 * 299.99453 * 11 10 9 29 29 H 1.08997 * 109.60456 * 172.10890 * 13 12 11 30 30 H 1.09005 * 109.60448 * 292.43526 * 13 12 11 31 31 H 1.08998 * 109.40854 * 170.47240 * 14 13 12 32 32 H 1.09007 * 109.40913 * 290.31543 * 14 13 12 33 33 H 1.07995 * 119.12876 * 180.02562 * 17 16 15 34 34 H 1.08005 * 120.44257 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.32512 * 168.50850 * 21 12 11 36 36 H 1.09002 * 109.32543 * 49.05175 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6967 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4353 -6.1035 -0.0018 13 6 1.7473 -7.3858 0.2166 14 6 0.6044 -7.5057 -0.7930 15 6 1.1160 -7.2217 -2.1799 16 7 0.3909 -7.5905 -3.2275 17 6 0.8053 -7.3500 -4.4544 18 7 1.9484 -6.7386 -4.6927 19 6 2.7248 -6.3445 -3.6969 20 6 2.3200 -6.5819 -2.3903 21 6 3.1996 -6.1411 -1.2537 22 1 -0.4851 0.8400 0.0004 23 1 0.6243 -2.5567 -0.8903 24 1 0.6248 -2.5570 0.8897 25 1 2.8722 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8906 27 1 0.8542 -5.0446 -0.8913 28 1 0.8537 -5.0451 0.8886 29 1 2.4497 -8.2068 0.0733 30 1 1.3481 -7.4187 1.2304 31 1 0.1945 -8.5151 -0.7578 32 1 -0.1772 -6.7884 -0.5424 33 1 0.1924 -7.6621 -5.2870 34 1 3.6607 -5.8443 -3.8977 35 1 4.0300 -6.8394 -1.1485 36 1 3.5926 -5.1469 -1.4663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880594415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:07 Heat of formation + Delta-G solvation = 18.689134 kcal Electronic energy + Delta-G solvation = -17742.816196 eV Core-core repulsion = 15032.520838 eV Total energy + Delta-G solvation = -2710.295358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.49155 -39.60094 -36.03641 -35.17216 -33.90626 -32.71943 -31.57789 -28.80052 -26.62349 -25.65563 -24.56051 -24.13234 -22.23981 -20.64672 -18.80668 -18.45008 -17.91083 -16.70103 -16.67281 -16.42387 -15.93740 -15.86032 -15.25085 -14.78199 -14.56501 -14.34570 -14.04452 -13.71053 -13.47597 -13.00716 -12.89512 -12.65704 -12.53659 -12.29685 -12.22811 -12.06177 -11.53955 -11.41035 -11.34664 -11.10452 -10.55637 -10.30855 -10.20795 -9.39043 -8.20527 -6.31836 -0.14837 -0.01208 1.39980 1.43162 1.50984 2.40605 2.68102 2.79844 3.12838 3.13270 3.22870 3.45302 3.71075 3.78108 4.05031 4.12928 4.19475 4.33184 4.42170 4.52393 4.63392 4.71362 4.72301 4.84615 4.88638 5.00100 5.02605 5.09862 5.26549 5.40015 5.51644 5.72883 5.85188 5.91389 6.00468 6.07232 6.25710 6.85551 7.02348 7.37848 8.91340 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.005221 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.460094 B = 5361.314118 C = 5739.054649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.066 3.934 12 N -0.525 5.525 13 C 0.056 3.944 14 C -0.108 4.108 15 C 0.164 3.836 16 N -0.540 5.540 17 C 0.277 3.723 18 N -0.539 5.539 19 C 0.148 3.852 20 C -0.217 4.217 21 C 0.095 3.905 22 H 0.263 0.737 23 H -0.020 1.020 24 H -0.008 1.008 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.014 0.986 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.220 0.780 34 H 0.194 0.806 35 H 0.120 0.880 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -17.074 -3.267 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.062 4.062 12 N -0.246 5.246 13 C -0.072 4.072 14 C -0.147 4.147 15 C 0.019 3.981 16 N -0.254 5.254 17 C -0.011 4.011 18 N -0.253 5.253 19 C -0.019 4.019 20 C -0.222 4.222 21 C -0.034 4.034 22 H 0.072 0.928 23 H -0.001 1.001 24 H 0.010 0.990 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.236 0.764 34 H 0.211 0.789 35 H 0.138 0.862 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.286 -17.187 -3.611 18.341 hybrid contribution -0.358 1.249 -0.315 1.336 sum 4.928 -15.939 -3.925 17.139 Atomic orbital electron populations 1.70098 1.07924 1.27814 1.51818 1.26008 0.95736 1.03480 0.94734 0.85504 0.78274 0.78008 0.79307 1.19169 1.20991 1.18877 1.21672 0.93630 0.92257 1.50371 0.91921 1.18953 0.94434 0.93418 0.94311 1.21414 0.97919 0.92421 1.01014 1.22044 0.93817 0.90648 0.99702 1.62632 1.26117 1.03310 1.32521 1.22421 0.94287 0.91469 0.99044 1.21152 1.00492 1.04574 0.88520 1.21613 0.90022 0.90267 0.96189 1.68386 1.35024 1.21484 1.00522 1.25448 0.90910 0.90706 0.94015 1.68446 1.06855 1.12610 1.37404 1.23684 0.98938 0.91872 0.87407 1.22199 0.98930 1.01642 0.99467 1.21216 0.95117 1.03358 0.83701 0.92834 1.00116 0.98986 0.92137 0.93012 0.96756 0.90822 0.88283 0.87758 0.87263 0.90046 0.76418 0.78908 0.86225 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.41 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.61 5.10 30.60 0.16 -3.45 16 11 C 0.07 2.16 3.97 86.30 0.34 2.50 16 12 N -0.53 -13.21 5.02 -901.38 -4.52 -17.73 16 13 C 0.06 1.08 6.02 86.24 0.52 1.60 16 14 C -0.11 -2.39 5.44 29.78 0.16 -2.23 16 15 C 0.16 4.37 5.96 42.31 0.25 4.62 16 16 N -0.54 -15.13 10.35 -188.59 -1.95 -17.08 16 17 C 0.28 7.06 12.28 180.90 2.22 9.29 16 18 N -0.54 -14.43 10.44 -199.95 -2.09 -16.52 16 19 C 0.15 3.60 10.98 84.77 0.93 4.53 16 20 C -0.22 -5.42 5.20 -19.91 -0.10 -5.52 16 21 C 0.10 2.14 5.48 85.47 0.47 2.61 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.05 2.01 6.34 -2.39 -0.02 1.99 16 27 H 0.01 0.52 5.90 -2.39 -0.01 0.50 16 28 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 29 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 30 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.05 7.06 -2.38 -0.02 2.04 16 33 H 0.22 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 2.28 6.04 -2.39 -0.01 2.27 16 Total: -1.00 -69.47 292.41 0.61 -68.86 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.07 Total: 8.45 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 5.79 Total: -14.88 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -8.28 Total: -108.86 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.47 0.61 -68.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880594415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.551 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds