Wall clock time and date at job start Sun Mar 29 2020 22:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47197 * 119.99993 * 2 1 3 5 5 O 1.21288 * 119.99814 * 359.97438 * 4 2 1 6 6 N 1.34778 * 119.99838 * 180.02562 * 4 2 1 7 7 C 1.39926 * 119.99779 * 185.26447 * 6 4 2 8 8 C 1.38873 * 120.06782 * 33.29159 * 7 6 4 9 9 C 1.38112 * 119.93071 * 180.02562 * 8 7 6 10 10 C 1.38283 * 120.07070 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.93289 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.46740 * 90.00286 * 11 10 9 13 13 H 1.07998 * 120.00205 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99802 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00080 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47092 * 59.99676 * 16 14 12 18 18 H 1.48498 * 109.47140 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46999 * 299.99645 * 16 14 12 20 20 C 1.38285 * 120.13800 * 0.25319 * 10 9 8 21 21 C 1.38115 * 120.07332 * 359.49252 * 20 10 9 22 22 H 1.08993 * 109.47384 * 300.00082 * 1 2 3 23 23 H 1.09007 * 109.47425 * 60.00122 * 1 2 3 24 24 H 1.08998 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47141 * 240.00390 * 2 1 3 26 26 H 1.08995 * 109.46949 * 60.00272 * 3 2 1 27 27 H 1.09001 * 109.46534 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46720 * 299.99621 * 3 2 1 29 29 H 0.96998 * 120.00163 * 5.26537 * 6 4 2 30 30 H 1.07997 * 120.03932 * 0.02562 * 8 7 6 31 31 H 1.08002 * 119.97035 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.47113 * 209.99457 * 11 10 9 33 33 H 1.08995 * 109.47129 * 330.00622 * 11 10 9 34 34 H 0.97005 * 120.00331 * 180.02562 * 15 14 12 35 35 H 1.08005 * 119.96458 * 179.74681 * 20 10 9 36 36 H 1.07988 * 120.03915 * 180.25800 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2441 -1.1709 2.0290 6 7 3.3574 -0.8330 1.4439 7 6 3.8248 -1.5864 2.5264 8 6 3.1218 -2.7068 2.9496 9 6 3.5855 -3.4481 4.0187 10 6 4.7481 -3.0754 4.6681 11 6 5.2508 -3.8861 5.8347 12 6 6.1747 -4.9666 5.3344 13 1 6.3772 -5.0573 4.2775 14 6 6.7607 -5.8399 6.2261 15 7 6.5137 -5.7297 7.5131 16 14 7.9053 -7.1796 5.6060 17 1 9.0564 -6.5602 4.9014 18 1 8.4008 -7.9784 6.7556 19 1 7.1690 -8.0648 4.6683 20 6 5.4473 -1.9569 4.2528 21 6 4.9918 -1.2144 3.1810 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.9871 -0.3991 0.8472 30 1 2.2135 -2.9983 2.4432 31 1 3.0390 -4.3193 4.3486 32 1 5.7911 -3.2361 6.5229 33 1 4.4061 -4.3411 6.3518 34 1 6.9263 -6.3438 8.1405 35 1 6.3528 -1.6660 4.7645 36 1 5.5405 -0.3435 2.8545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905007734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:03 Heat of formation + Delta-G solvation = -52.630555 kcal Electronic energy + Delta-G solvation = -17100.538634 eV Core-core repulsion = 14354.857871 eV Total energy + Delta-G solvation = -2745.680763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60211 -39.69345 -36.31750 -35.53735 -34.88963 -32.15313 -31.79429 -28.63665 -27.88437 -25.65272 -24.18244 -23.70172 -21.88142 -20.81220 -18.72431 -18.48723 -18.06681 -16.85165 -16.51103 -15.97574 -15.92027 -15.44603 -14.77592 -14.55340 -14.51430 -14.28528 -13.79662 -13.64431 -13.28354 -13.18789 -13.10828 -12.84564 -12.60007 -12.45924 -12.06442 -12.02349 -11.98207 -11.66824 -11.52404 -11.07297 -10.68496 -10.59901 -9.78743 -8.87875 -8.18377 -6.33572 0.42191 0.54726 1.39865 1.43165 1.51307 1.63600 2.10044 2.40272 2.98830 3.10728 3.61900 3.97237 4.04433 4.06893 4.13018 4.36354 4.45524 4.61134 4.63597 4.74705 4.78765 4.90760 4.94944 5.08062 5.09972 5.31045 5.32036 5.33903 5.35202 5.40974 5.49119 5.59572 5.74866 6.06451 6.11299 6.24068 6.49035 6.78895 7.18967 7.34964 8.89565 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.049823 B = 0.004036 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.852602 B = 6936.272845 C = 6994.745278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.143 4.143 4 C 0.505 3.495 5 O -0.568 6.568 6 N -0.656 5.656 7 C 0.119 3.881 8 C -0.126 4.126 9 C -0.121 4.121 10 C -0.076 4.076 11 C 0.057 3.943 12 C -0.530 4.530 13 H 0.056 0.944 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.269 1.269 20 C -0.113 4.113 21 C -0.129 4.129 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.127 0.873 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.427 0.573 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.007 0.993 33 H -0.002 1.002 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 14.565 -18.658 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.201 4.201 4 C 0.295 3.705 5 O -0.446 6.446 6 N -0.303 5.303 7 C 0.025 3.975 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.076 4.076 11 C 0.020 3.980 12 C -0.568 4.568 13 H 0.074 0.926 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.132 4.132 21 C -0.149 4.149 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.145 0.855 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.266 0.734 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.025 0.975 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.577 14.197 -17.990 23.842 hybrid contribution 0.682 -0.970 0.343 1.234 sum -5.895 13.227 -17.647 22.828 Atomic orbital electron populations 1.21648 0.92754 1.02109 1.02694 1.21396 0.98118 0.98367 0.94614 1.21842 1.02217 0.92401 1.03597 1.21793 0.81416 0.78941 0.88396 1.90721 1.56235 1.49651 1.48018 1.43426 1.08053 1.50721 1.28065 1.17651 0.95795 0.92227 0.91848 1.20987 1.00602 0.94683 0.98336 1.20917 0.96564 0.99780 0.96721 1.20405 0.94166 0.95359 0.97687 1.18086 0.94878 0.93658 0.91345 1.21365 1.27470 1.14338 0.93578 0.92578 1.25966 0.98419 1.00194 0.94932 1.70082 1.45214 1.39093 1.02745 0.85460 0.78969 0.78524 0.77870 1.18910 1.20581 1.19447 1.20999 0.99880 0.94831 0.97461 1.21055 0.96945 1.01128 0.95722 0.93605 0.89076 0.93519 0.85535 0.93262 0.90535 0.88948 0.73369 0.86060 0.87305 0.97482 0.98372 0.92549 0.85511 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.48 71.98 0.61 -1.46 16 2 C -0.10 -1.43 3.27 -11.54 -0.04 -1.47 16 3 C -0.14 -1.27 9.09 71.99 0.65 -0.62 16 4 C 0.50 12.14 6.89 87.66 0.60 12.74 16 5 O -0.57 -19.52 13.67 -3.05 -0.04 -19.57 16 6 N -0.66 -14.52 5.27 -303.50 -1.60 -16.12 16 7 C 0.12 3.74 6.28 38.15 0.24 3.98 16 8 C -0.13 -4.79 8.66 22.39 0.19 -4.60 16 9 C -0.12 -5.28 9.69 22.25 0.22 -5.07 16 10 C -0.08 -3.50 5.07 -19.84 -0.10 -3.60 16 11 C 0.06 3.18 5.10 29.10 0.15 3.33 16 12 C -0.53 -30.90 9.09 25.60 0.23 -30.67 16 13 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 16 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 C -0.11 -4.38 9.69 22.25 0.22 -4.16 16 21 C -0.13 -3.91 9.96 22.39 0.22 -3.69 16 22 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 23 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 25 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.45 7.45 -2.39 -0.02 0.43 16 28 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.43 5.64 8.09 -92.71 -0.75 4.89 16 30 H 0.12 4.62 6.42 -2.91 -0.02 4.60 16 31 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 33 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 34 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 35 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.16 3.39 8.06 -2.92 -0.02 3.37 16 Total: -1.00 -73.99 306.93 4.65 -69.34 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.32 Total: 11.12 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.66 Total: -34.66 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.31 Total: -72.99 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.04 Total: -19.57 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.99 4.65 -69.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905007734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.708 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds