Wall clock time and date at job start Sun Mar 29 2020 23:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48507 * 109.46904 * 239.99972 * 3 2 1 5 5 H 1.48503 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47029 * 119.99955 * 3 2 1 7 7 C 1.37880 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99921 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.46982 * 110.99622 * 170.00101 * 10 9 7 12 12 C 1.53392 * 109.72770 * 53.30524 * 11 10 9 13 13 N 1.46633 * 108.22909 * 49.85635 * 12 11 10 14 14 N 1.39385 * 128.42354 * 163.44248 * 13 12 11 15 15 C 1.31112 * 108.07904 * 180.20379 * 14 13 12 16 16 C 1.50694 * 125.86950 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.50238 * 163.76858 * 16 15 14 18 18 C 1.53002 * 117.50327 * 95.10622 * 16 15 14 19 19 C 1.40131 * 108.27183 * 359.93842 * 15 14 13 20 20 C 1.34546 * 107.79296 * 359.97438 * 19 15 14 21 21 C 1.47373 * 110.99992 * 294.12073 * 10 9 7 22 22 H 0.96998 * 119.99937 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47224 * 59.99692 * 9 7 2 24 24 H 1.09007 * 109.47142 * 299.99986 * 9 7 2 25 25 H 1.08995 * 109.42797 * 293.22125 * 11 10 9 26 26 H 1.09000 * 109.38286 * 173.35842 * 11 10 9 27 27 H 1.09001 * 109.70869 * 290.16958 * 12 11 10 28 28 H 1.09000 * 109.70659 * 169.54229 * 12 11 10 29 29 H 1.09006 * 115.54963 * 309.44209 * 16 15 14 30 30 H 1.08994 * 117.49657 * 359.97438 * 17 16 15 31 31 H 1.09006 * 117.49447 * 145.01874 * 17 16 15 32 32 H 1.08997 * 117.49924 * 214.98419 * 18 16 15 33 33 H 1.08999 * 117.49478 * 359.97438 * 18 16 15 34 34 H 1.08002 * 126.10692 * 179.97438 * 19 15 14 35 35 H 1.08999 * 109.74214 * 45.51516 * 21 10 9 36 36 H 1.08991 * 109.74395 * 166.23670 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5205 -4.8941 0.2401 12 6 0.3723 -5.0611 -0.7633 13 7 0.8960 -4.7986 -2.1075 14 7 0.3285 -5.1266 -3.3376 15 6 1.1357 -4.7088 -4.2825 16 6 0.9111 -4.8572 -5.7652 17 6 1.7562 -3.9877 -6.6983 18 6 0.2692 -3.6810 -6.5038 19 6 2.2429 -4.0997 -3.6769 20 6 2.0711 -4.1666 -2.3441 21 6 2.9771 -3.6524 -1.2533 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 1.1208 -4.9077 1.2540 26 1 2.2298 -5.7128 0.1190 27 1 -0.4228 -4.3518 -0.5335 28 1 -0.0156 -6.0784 -0.7120 29 1 0.6594 -5.8621 -6.1043 30 1 2.4744 -3.3080 -6.2397 31 1 2.0603 -4.4205 -7.6515 32 1 -0.4044 -3.9121 -7.3290 33 1 0.0090 -2.8000 -5.9171 34 1 3.0841 -3.6558 -4.1886 35 1 3.3215 -2.6489 -1.5033 36 1 3.8324 -4.3184 -1.1405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932612686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:04 Heat of formation + Delta-G solvation = 110.849803 kcal Electronic energy + Delta-G solvation = -18089.372161 eV Core-core repulsion = 15383.073190 eV Total energy + Delta-G solvation = -2706.298971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20159 -37.77934 -36.38851 -32.99465 -32.07527 -30.40132 -28.35790 -27.04111 -24.80594 -23.58141 -22.60344 -22.32397 -20.99591 -19.21316 -18.17557 -16.72813 -16.04959 -15.66928 -15.02833 -14.82996 -14.50978 -14.22478 -13.83115 -13.53646 -13.13829 -12.56223 -12.18898 -12.02340 -11.63414 -11.44571 -11.39965 -11.12398 -11.05262 -10.75562 -10.68950 -10.52255 -10.44002 -9.99939 -9.87873 -9.34635 -8.54944 -8.47002 -8.03227 -7.59664 -6.09614 -4.12052 2.34418 2.86010 3.12077 3.30036 3.34408 3.36591 3.98049 4.35826 4.64054 4.70650 4.98147 4.98345 5.04403 5.22145 5.27381 5.29704 5.44525 5.52884 5.69339 5.82507 5.87134 5.94449 6.02643 6.08010 6.11589 6.21666 6.26984 6.34055 6.63586 7.02695 7.09532 7.19093 7.46531 7.64630 7.82607 8.00420 8.23324 8.36205 8.93435 9.52406 11.01261 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.007366 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.704519 B = 3800.199967 C = 4612.597943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.187 3.813 10 N -0.530 5.530 11 C 0.042 3.958 12 C 0.097 3.903 13 N -0.361 5.361 14 N -0.297 5.297 15 C 0.092 3.908 16 C -0.073 4.073 17 C -0.166 4.166 18 C -0.168 4.168 19 C -0.268 4.268 20 C 0.074 3.926 21 C 0.118 3.882 22 H 0.263 0.737 23 H 0.000 1.000 24 H 0.032 0.968 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -9.330 -7.418 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.062 3.938 10 N -0.252 5.252 11 C -0.089 4.089 12 C -0.026 4.026 13 N -0.144 5.144 14 N -0.119 5.119 15 C -0.074 4.074 16 C -0.093 4.093 17 C -0.204 4.204 18 C -0.206 4.206 19 C -0.298 4.298 20 C -0.055 4.055 21 C -0.012 4.012 22 H 0.072 0.928 23 H 0.018 0.982 24 H 0.050 0.950 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.160 0.840 35 H 0.131 0.869 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.411 -9.748 -6.563 11.996 hybrid contribution 0.325 1.209 -0.786 1.478 sum 2.736 -8.539 -7.349 11.593 Atomic orbital electron populations 1.69943 1.06130 1.27065 1.50372 1.24980 0.94858 0.99391 0.95163 0.86543 0.79458 0.82615 0.78727 1.20147 1.21327 1.20053 1.21047 0.93428 0.89755 1.50924 0.91743 1.19858 0.90238 0.87182 0.96507 1.62556 1.28116 1.02755 1.31759 1.22620 0.93916 0.94107 0.98224 1.22537 0.99719 1.02489 0.77841 1.48445 1.15929 1.44865 1.05124 1.77028 1.21528 1.25012 0.88299 1.21327 0.93393 0.99158 0.93488 1.20034 1.06162 0.96636 0.86442 1.22993 0.94396 1.02924 1.00088 1.22992 0.95717 0.99566 1.02300 1.20708 1.03001 1.14024 0.92036 1.22113 0.89969 0.96263 0.97123 1.21215 0.93655 1.02507 0.83837 0.92762 0.98240 0.94998 0.88485 0.90866 0.89401 0.89679 0.86826 0.88155 0.88438 0.88529 0.88483 0.84031 0.86883 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.98 8.31 -34.44 -0.29 -14.27 16 8 H 0.06 1.71 7.23 -52.49 -0.38 1.33 16 9 C 0.19 4.68 3.78 -4.98 -0.02 4.66 16 10 N -0.53 -10.79 4.96 -236.70 -1.17 -11.97 16 11 C 0.04 0.69 5.94 -3.58 -0.02 0.66 16 12 C 0.10 1.69 6.58 -3.77 -0.02 1.67 16 13 N -0.36 -7.19 3.81 -56.85 -0.22 -7.40 16 14 N -0.30 -6.03 12.64 33.76 0.43 -5.60 16 15 C 0.09 1.68 6.86 -82.19 -0.56 1.11 16 16 C -0.07 -1.03 6.33 -91.77 -0.58 -1.61 16 17 C -0.17 -1.94 10.02 -26.69 -0.27 -2.20 16 18 C -0.17 -2.15 10.24 -26.69 -0.27 -2.43 16 19 C -0.27 -4.92 10.07 -40.18 -0.40 -5.32 16 20 C 0.07 1.46 5.91 -82.21 -0.49 0.97 16 21 C 0.12 2.21 6.02 -4.65 -0.03 2.19 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.00 -0.01 6.26 -51.93 -0.32 -0.33 16 24 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 25 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 27 H 0.09 1.68 7.20 -51.93 -0.37 1.31 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.10 1.21 7.15 -51.93 -0.37 0.84 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.14 2.25 7.40 -52.49 -0.39 1.86 16 35 H 0.11 2.29 6.62 -51.93 -0.34 1.94 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -31.53 294.40 -8.98 -40.51 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.11 Total: 2.47 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -3.05 Total: -13.04 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.23 Total: -50.70 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.53 -8.98 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932612686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.356 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds