Wall clock time and date at job start Sun Mar 29 2020 23:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48507 * 109.46904 * 239.99972 * 3 2 1 5 5 H 1.48503 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47029 * 119.99955 * 3 2 1 7 7 C 1.37880 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99921 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47039 * 180.02562 * 9 7 2 11 11 C 1.46982 * 110.99622 * 170.00101 * 10 9 7 12 12 C 1.53392 * 109.72770 * 53.30524 * 11 10 9 13 13 N 1.46633 * 108.22909 * 49.85635 * 12 11 10 14 14 N 1.39385 * 128.42354 * 163.44248 * 13 12 11 15 15 C 1.31112 * 108.07904 * 180.20379 * 14 13 12 16 16 C 1.50694 * 125.86950 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.50238 * 163.76858 * 16 15 14 18 18 C 1.53002 * 117.50327 * 95.10622 * 16 15 14 19 19 C 1.40131 * 108.27183 * 359.93842 * 15 14 13 20 20 C 1.34546 * 107.79296 * 359.97438 * 19 15 14 21 21 C 1.47373 * 110.99992 * 294.12073 * 10 9 7 22 22 H 0.96998 * 119.99937 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47224 * 59.99692 * 9 7 2 24 24 H 1.09007 * 109.47142 * 299.99986 * 9 7 2 25 25 H 1.08995 * 109.42797 * 293.22125 * 11 10 9 26 26 H 1.09000 * 109.38286 * 173.35842 * 11 10 9 27 27 H 1.09001 * 109.70869 * 290.16958 * 12 11 10 28 28 H 1.09000 * 109.70659 * 169.54229 * 12 11 10 29 29 H 1.09006 * 115.54963 * 309.44209 * 16 15 14 30 30 H 1.08994 * 117.49657 * 359.97438 * 17 16 15 31 31 H 1.09006 * 117.49447 * 145.01874 * 17 16 15 32 32 H 1.08997 * 117.49924 * 214.98419 * 18 16 15 33 33 H 1.08999 * 117.49478 * 359.97438 * 18 16 15 34 34 H 1.08002 * 126.10692 * 179.97438 * 19 15 14 35 35 H 1.08999 * 109.74214 * 45.51516 * 21 10 9 36 36 H 1.08991 * 109.74395 * 166.23670 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5205 -4.8941 0.2401 12 6 0.3723 -5.0611 -0.7633 13 7 0.8960 -4.7986 -2.1075 14 7 0.3285 -5.1266 -3.3376 15 6 1.1357 -4.7088 -4.2825 16 6 0.9111 -4.8572 -5.7652 17 6 1.7562 -3.9877 -6.6983 18 6 0.2692 -3.6810 -6.5038 19 6 2.2429 -4.0997 -3.6769 20 6 2.0711 -4.1666 -2.3441 21 6 2.9771 -3.6524 -1.2533 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 1.1208 -4.9077 1.2540 26 1 2.2298 -5.7128 0.1190 27 1 -0.4228 -4.3518 -0.5335 28 1 -0.0156 -6.0784 -0.7120 29 1 0.6594 -5.8621 -6.1043 30 1 2.4744 -3.3080 -6.2397 31 1 2.0603 -4.4205 -7.6515 32 1 -0.4044 -3.9121 -7.3290 33 1 0.0090 -2.8000 -5.9171 34 1 3.0841 -3.6558 -4.1886 35 1 3.3215 -2.6489 -1.5033 36 1 3.8324 -4.3184 -1.1405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932612686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:04 Heat of formation + Delta-G solvation = 89.881633 kcal Electronic energy + Delta-G solvation = -18090.281410 eV Core-core repulsion = 15383.073190 eV Total energy + Delta-G solvation = -2707.208219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.64273 -39.18361 -37.61355 -34.95945 -33.65817 -31.92722 -29.96853 -28.79015 -26.38438 -25.14626 -24.05790 -23.37013 -22.52660 -20.54267 -19.69290 -18.55619 -17.64832 -17.08109 -16.60958 -16.32373 -16.06617 -15.71011 -15.27986 -15.03542 -14.55080 -14.08470 -13.94124 -13.57989 -13.13583 -12.97495 -12.80978 -12.61306 -12.51398 -12.43020 -12.33135 -11.88965 -11.83735 -11.48882 -11.38342 -11.13431 -10.64309 -9.93698 -9.47886 -9.29474 -8.23451 -6.33432 0.88123 1.40503 1.43486 1.47595 1.51170 1.74100 2.38462 2.93051 3.09363 3.15679 3.40131 3.67344 3.74652 3.94782 3.97587 4.10226 4.12284 4.35440 4.47856 4.48321 4.61303 4.73032 4.75661 4.78077 4.81027 5.00269 5.09413 5.14221 5.18752 5.24340 5.29621 5.59126 5.72743 5.95707 6.04286 6.09717 6.44687 6.78207 6.81850 7.36356 8.87607 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.007366 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.704519 B = 3800.199967 C = 4612.597943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.045 3.955 12 C 0.096 3.904 13 N -0.375 5.375 14 N -0.331 5.331 15 C 0.090 3.910 16 C -0.094 4.094 17 C -0.143 4.143 18 C -0.171 4.171 19 C -0.276 4.276 20 C 0.055 3.945 21 C 0.122 3.878 22 H 0.263 0.737 23 H -0.036 1.036 24 H 0.007 0.993 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 -9.837 -8.475 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.256 5.256 11 C -0.085 4.085 12 C -0.026 4.026 13 N -0.158 5.158 14 N -0.153 5.153 15 C -0.075 4.075 16 C -0.114 4.114 17 C -0.180 4.180 18 C -0.209 4.209 19 C -0.306 4.306 20 C -0.074 4.074 21 C -0.008 4.008 22 H 0.071 0.929 23 H -0.018 1.018 24 H 0.025 0.975 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.113 0.887 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.218 -10.279 -7.615 13.470 hybrid contribution -0.248 1.314 -0.484 1.422 sum 3.971 -8.965 -8.098 12.717 Atomic orbital electron populations 1.70091 1.07913 1.27892 1.51774 1.25917 0.95642 1.03322 0.94762 0.85459 0.78163 0.77846 0.79349 1.19115 1.21331 1.18834 1.21451 0.93880 0.90846 1.50082 0.91158 1.19392 0.90123 0.88684 0.93578 1.62438 1.27227 1.03142 1.32757 1.22763 0.94142 0.92912 0.98654 1.22606 0.99356 1.03219 0.77432 1.48662 1.16165 1.45375 1.05584 1.76974 1.22726 1.26652 0.88979 1.22007 0.92637 0.97734 0.95161 1.20248 1.08659 0.98012 0.84441 1.23123 0.93220 1.01198 1.00445 1.23030 0.97607 0.97817 1.02434 1.21085 1.03772 1.13820 0.91877 1.22396 0.90295 0.96701 0.97958 1.21247 0.94218 1.02382 0.82916 0.92864 1.01804 0.97479 0.86979 0.87817 0.92361 0.86830 0.85231 0.88711 0.85060 0.85926 0.91240 0.81965 0.88670 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.52 -28.92 8.31 25.60 0.21 -28.71 16 8 H 0.07 3.71 7.23 -2.91 -0.02 3.69 16 9 C 0.21 10.75 3.78 85.56 0.32 11.07 16 10 N -0.53 -21.55 4.96 -902.79 -4.48 -26.03 16 11 C 0.04 1.42 5.94 86.42 0.51 1.94 16 12 C 0.10 3.38 6.58 86.49 0.57 3.95 16 13 N -0.37 -15.04 3.81 -333.79 -1.27 -16.31 16 14 N -0.33 -13.58 12.64 -47.10 -0.60 -14.18 16 15 C 0.09 3.25 6.86 43.12 0.30 3.55 16 16 C -0.09 -2.51 6.33 -11.54 -0.07 -2.58 16 17 C -0.14 -2.93 10.02 30.62 0.31 -2.63 16 18 C -0.17 -4.14 10.24 30.62 0.31 -3.83 16 19 C -0.28 -9.96 10.07 21.88 0.22 -9.74 16 20 C 0.06 2.16 5.91 41.19 0.24 2.40 16 21 C 0.12 4.47 6.02 85.51 0.51 4.99 16 22 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 23 H -0.04 -2.08 6.26 -2.39 -0.01 -2.10 16 24 H 0.01 0.40 8.08 -2.38 -0.02 0.38 16 25 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.10 2.72 8.07 -2.39 -0.02 2.70 16 27 H 0.06 2.36 7.20 -2.39 -0.02 2.34 16 28 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.13 3.02 8.14 -2.38 -0.02 3.00 16 30 H 0.09 2.07 7.15 -2.39 -0.02 2.05 16 31 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.16 4.94 7.40 -2.91 -0.02 4.92 16 35 H 0.10 3.82 6.62 -2.39 -0.02 3.81 16 36 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -69.74 294.40 0.94 -68.80 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.07 Total: 17.40 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.90 Total: -19.04 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -6.06 Total: -113.04 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.74 0.94 -68.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932612686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.681 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds