Wall clock time and date at job start Sun Mar 29 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47088 * 306.58062 * 3 2 1 5 5 C 1.37094 * 120.00002 * 264.14093 * 4 3 2 6 6 H 1.07993 * 120.00074 * 197.43305 * 5 4 3 7 7 C 1.38950 * 120.00093 * 17.42870 * 5 4 3 8 8 N 1.31416 * 120.00091 * 21.53888 * 7 5 4 9 9 Si 1.86799 * 120.00142 * 201.53576 * 7 5 4 10 10 H 1.48492 * 109.47203 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47259 * 120.00548 * 9 7 5 12 12 H 1.48503 * 109.46942 * 240.00388 * 9 7 5 13 13 C 1.34778 * 119.99916 * 84.14338 * 4 3 2 14 14 O 1.21291 * 119.99725 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99737 * 359.97438 * 13 4 3 16 16 C 1.53007 * 109.46906 * 180.02562 * 15 13 4 17 17 H 1.09002 * 109.63472 * 305.41955 * 16 15 13 18 18 C 1.53017 * 109.64210 * 66.05469 * 16 15 13 19 19 C 1.50072 * 110.14668 * 169.12375 * 18 16 15 20 20 C 1.29251 * 124.01668 * 342.73730 * 19 18 16 21 21 C 1.50070 * 124.21878 * 0.72901 * 20 19 18 22 22 C 1.53020 * 110.03718 * 342.65278 * 21 20 19 23 23 H 4.40637 * 5.51468 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47095 * 186.58285 * 3 2 1 25 25 H 1.08998 * 109.47488 * 66.58371 * 3 2 1 26 26 H 0.96989 * 120.00423 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.47324 * 60.00687 * 15 13 4 28 28 H 1.08996 * 109.47488 * 299.99927 * 15 13 4 29 29 H 1.09002 * 109.36068 * 289.32763 * 18 16 15 30 30 H 1.09001 * 109.35685 * 48.91400 * 18 16 15 31 31 H 1.08001 * 117.96185 * 162.89660 * 19 18 16 32 32 H 1.08002 * 117.81847 * 180.60893 * 20 19 18 33 33 H 1.08998 * 109.35761 * 222.51146 * 21 20 19 34 34 H 1.09000 * 109.35327 * 102.79228 * 21 20 19 35 35 H 1.09001 * 109.64459 * 169.18868 * 22 21 20 36 36 H 1.09002 * 109.64515 * 289.60673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.8223 1.1092 5 6 3.4771 -0.2348 2.2996 6 1 4.0898 -0.7704 3.0095 7 6 3.0361 1.0498 2.5926 8 7 1.9844 1.5402 1.9758 9 14 3.9379 2.0799 3.8634 10 1 5.0807 1.3042 4.4088 11 1 4.4429 3.3223 3.2258 12 1 3.0073 2.4323 4.9658 13 6 3.2476 -2.1569 0.9593 14 8 3.6526 -2.8382 1.8774 15 6 2.8706 -2.8027 -0.3491 16 6 3.0903 -4.3140 -0.2539 17 1 4.1156 -4.5162 0.0560 18 6 2.1139 -4.9128 0.7607 19 6 2.1321 -6.4108 0.6737 20 6 2.6090 -7.0711 -0.3299 21 6 3.2254 -6.4358 -1.5418 22 6 2.8276 -4.9603 -1.6199 23 1 -1.0499 0.0000 0.0003 24 1 3.0088 1.0217 0.1178 25 1 3.0095 -0.4076 -0.9430 26 1 1.6762 2.4367 2.1805 27 1 3.4904 -2.3948 -1.1476 28 1 1.8213 -2.6014 -0.5647 29 1 2.4036 -4.6058 1.7657 30 1 1.1074 -4.5508 0.5506 31 1 1.7191 -6.9712 1.4994 32 1 2.5620 -8.1494 -0.2920 33 1 2.8774 -6.9517 -2.4367 34 1 4.3107 -6.5145 -1.4784 35 1 3.4239 -4.4598 -2.3829 36 1 1.7697 -4.8787 -1.8699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935812759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:05 Heat of formation + Delta-G solvation = 30.849930 kcal Electronic energy + Delta-G solvation = -17986.746601 eV Core-core repulsion = 15244.685823 eV Total energy + Delta-G solvation = -2742.060777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.17890 -37.71348 -35.12127 -32.49504 -31.82028 -31.17448 -30.45452 -27.25259 -26.24649 -24.26718 -22.87045 -21.01134 -18.74810 -17.84530 -17.63071 -16.54059 -16.05310 -15.60060 -14.67017 -14.39764 -14.25207 -13.82640 -13.33537 -13.17343 -12.65694 -12.37875 -12.17991 -12.03473 -11.78102 -11.72084 -11.48928 -11.06586 -11.00157 -10.46222 -10.30681 -10.27311 -10.11151 -9.79267 -9.33190 -9.24240 -8.87730 -8.71797 -8.25982 -7.82111 -6.30504 -3.82256 2.56081 3.15035 3.27082 3.33855 3.71286 3.96079 4.07551 4.20854 4.84252 4.99507 5.01942 5.09895 5.30900 5.49085 5.55189 5.59527 5.62748 5.74054 5.88928 5.97507 6.08684 6.13260 6.15115 6.25079 6.28064 6.44019 6.47171 6.74123 6.79147 6.87315 6.94464 7.04799 7.26624 7.59331 8.10241 8.46799 8.82491 9.18325 9.40812 9.97192 10.70614 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.032104 B = 0.006091 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.947989 B = 4595.880850 C = 5037.594056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.444 5.444 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.453 3.547 14 O -0.581 6.581 15 C -0.129 4.129 16 C -0.064 4.064 17 H 0.076 0.924 18 C -0.093 4.093 19 C -0.136 4.136 20 C -0.176 4.176 21 C -0.085 4.085 22 C -0.117 4.117 23 H 0.198 0.802 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.267 0.733 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -7.629 -8.237 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.163 5.163 5 C -0.441 4.441 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.745 3.255 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.242 3.758 14 O -0.465 6.465 15 C -0.169 4.169 16 C -0.083 4.083 17 H 0.095 0.905 18 C -0.130 4.130 19 C -0.154 4.154 20 C -0.194 4.194 21 C -0.122 4.122 22 C -0.154 4.154 23 H 0.215 0.785 24 H 0.126 0.874 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.204 -7.771 -7.757 10.982 hybrid contribution -0.160 0.745 0.697 1.033 sum -0.364 -7.026 -7.060 9.967 Atomic orbital electron populations 1.24257 0.95372 1.04326 1.04273 1.23206 0.94380 0.97008 0.96675 1.18249 0.84230 0.98357 0.88331 1.43742 1.56208 1.04357 1.11975 1.19688 1.30030 0.98040 0.96302 0.87865 1.25269 0.95221 0.98324 0.98579 1.70097 1.19831 1.17279 1.43035 0.85996 0.79757 0.79579 0.80175 1.19260 1.20671 1.20966 1.20121 0.83868 0.82138 0.89681 1.90479 1.50940 1.61752 1.43325 1.21668 1.02383 0.95585 0.97299 1.20855 1.00487 0.92879 0.94051 0.90509 1.20632 0.98909 0.91251 1.02159 1.22158 0.98997 0.96863 0.97425 1.21886 1.02264 0.98875 0.96415 1.20384 1.00131 0.95590 0.96129 1.21699 1.01348 0.94951 0.97449 0.78458 0.87366 0.92035 0.92290 0.90610 0.90280 0.88606 0.91649 0.88551 0.88768 0.91730 0.91287 0.91929 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.11 -2.48 10.87 -37.12 -0.40 -2.88 16 3 C 0.23 5.09 4.91 -6.82 -0.03 5.06 16 4 N -0.44 -11.12 2.60 -117.93 -0.31 -11.43 16 5 C -0.31 -8.59 9.33 -14.93 -0.14 -8.73 16 6 H 0.10 3.00 7.38 -52.49 -0.39 2.61 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 16 8 N -0.86 -22.73 9.48 55.50 0.53 -22.21 16 9 Si 0.92 20.51 29.60 -169.99 -5.03 15.47 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.45 10.76 7.33 -10.99 -0.08 10.68 16 14 O -0.58 -15.52 13.74 5.55 0.08 -15.44 16 15 C -0.13 -2.36 3.78 -27.88 -0.11 -2.46 16 16 C -0.06 -1.06 1.87 -90.41 -0.17 -1.23 16 17 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 18 C -0.09 -1.60 5.06 -28.18 -0.14 -1.75 16 19 C -0.14 -2.01 9.80 -35.85 -0.35 -2.37 16 20 C -0.18 -2.32 9.78 -35.85 -0.35 -2.67 16 21 C -0.09 -1.03 6.12 -28.18 -0.17 -1.20 16 22 C -0.12 -1.55 5.30 -26.52 -0.14 -1.69 16 23 H 0.20 3.34 7.80 -54.10 -0.42 2.92 16 24 H 0.11 2.51 6.44 -51.93 -0.33 2.18 16 25 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.08 1.22 7.42 -51.93 -0.39 0.83 16 28 H 0.08 1.43 7.45 -51.93 -0.39 1.04 16 29 H 0.10 1.97 6.31 -51.93 -0.33 1.64 16 30 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 31 H 0.10 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -30.02 297.47 -6.95 -36.97 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.09 Total: 5.58 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -1.61 Total: -13.43 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.22 Total: -33.64 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.08 Total: -15.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.02 -6.95 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.820 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds