Wall clock time and date at job start Sun Mar 29 2020 22:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47088 * 306.58062 * 3 2 1 5 5 C 1.37094 * 120.00002 * 264.14093 * 4 3 2 6 6 H 1.07993 * 120.00074 * 197.43305 * 5 4 3 7 7 C 1.38950 * 120.00093 * 17.42870 * 5 4 3 8 8 N 1.31416 * 120.00091 * 21.53888 * 7 5 4 9 9 Si 1.86799 * 120.00142 * 201.53576 * 7 5 4 10 10 H 1.48492 * 109.47203 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47259 * 120.00548 * 9 7 5 12 12 H 1.48503 * 109.46942 * 240.00388 * 9 7 5 13 13 C 1.34778 * 119.99916 * 84.14338 * 4 3 2 14 14 O 1.21291 * 119.99725 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99737 * 359.97438 * 13 4 3 16 16 C 1.53007 * 109.46906 * 180.02562 * 15 13 4 17 17 H 1.09002 * 109.63472 * 305.41955 * 16 15 13 18 18 C 1.53017 * 109.64210 * 66.05469 * 16 15 13 19 19 C 1.50072 * 110.14668 * 169.12375 * 18 16 15 20 20 C 1.29251 * 124.01668 * 342.73730 * 19 18 16 21 21 C 1.50070 * 124.21878 * 0.72901 * 20 19 18 22 22 C 1.53020 * 110.03718 * 342.65278 * 21 20 19 23 23 H 4.40637 * 5.51468 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47095 * 186.58285 * 3 2 1 25 25 H 1.08998 * 109.47488 * 66.58371 * 3 2 1 26 26 H 0.96989 * 120.00423 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.47324 * 60.00687 * 15 13 4 28 28 H 1.08996 * 109.47488 * 299.99927 * 15 13 4 29 29 H 1.09002 * 109.36068 * 289.32763 * 18 16 15 30 30 H 1.09001 * 109.35685 * 48.91400 * 18 16 15 31 31 H 1.08001 * 117.96185 * 162.89660 * 19 18 16 32 32 H 1.08002 * 117.81847 * 180.60893 * 20 19 18 33 33 H 1.08998 * 109.35761 * 222.51146 * 21 20 19 34 34 H 1.09000 * 109.35327 * 102.79228 * 21 20 19 35 35 H 1.09001 * 109.64459 * 169.18868 * 22 21 20 36 36 H 1.09002 * 109.64515 * 289.60673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.8223 1.1092 5 6 3.4771 -0.2348 2.2996 6 1 4.0898 -0.7704 3.0095 7 6 3.0361 1.0498 2.5926 8 7 1.9844 1.5402 1.9758 9 14 3.9379 2.0799 3.8634 10 1 5.0807 1.3042 4.4088 11 1 4.4429 3.3223 3.2258 12 1 3.0073 2.4323 4.9658 13 6 3.2476 -2.1569 0.9593 14 8 3.6526 -2.8382 1.8774 15 6 2.8706 -2.8027 -0.3491 16 6 3.0903 -4.3140 -0.2539 17 1 4.1156 -4.5162 0.0560 18 6 2.1139 -4.9128 0.7607 19 6 2.1321 -6.4108 0.6737 20 6 2.6090 -7.0711 -0.3299 21 6 3.2254 -6.4358 -1.5418 22 6 2.8276 -4.9603 -1.6199 23 1 -1.0499 0.0000 0.0003 24 1 3.0088 1.0217 0.1178 25 1 3.0095 -0.4076 -0.9430 26 1 1.6762 2.4367 2.1805 27 1 3.4904 -2.3948 -1.1476 28 1 1.8213 -2.6014 -0.5647 29 1 2.4036 -4.6058 1.7657 30 1 1.1074 -4.5508 0.5506 31 1 1.7191 -6.9712 1.4994 32 1 2.5620 -8.1494 -0.2920 33 1 2.8774 -6.9517 -2.4367 34 1 4.3107 -6.5145 -1.4784 35 1 3.4239 -4.4598 -2.3829 36 1 1.7697 -4.8787 -1.8699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935812759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:05 Heat of formation + Delta-G solvation = 14.869146 kcal Electronic energy + Delta-G solvation = -17987.439579 eV Core-core repulsion = 15244.685823 eV Total energy + Delta-G solvation = -2742.753756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81881 -39.11582 -36.99408 -34.17798 -33.36424 -32.99195 -31.55974 -28.85684 -27.93923 -26.09623 -24.01716 -22.36883 -20.46197 -19.65432 -18.84285 -18.29528 -17.82835 -16.77312 -16.49878 -16.08360 -15.96048 -15.15280 -14.75318 -14.62321 -14.10104 -13.99202 -13.72231 -13.48109 -13.40141 -13.08947 -12.90527 -12.75775 -12.53934 -12.31849 -12.11614 -11.56345 -11.38010 -11.15016 -11.06109 -10.94425 -10.60156 -10.16862 -9.82509 -9.75677 -8.30059 -5.89554 1.35020 1.42077 1.47194 1.55225 1.94290 2.18153 2.34449 2.40359 3.07167 3.23756 3.82889 3.86678 3.90957 3.98837 4.26508 4.34469 4.46209 4.52806 4.62627 4.66155 4.81492 4.82355 4.90637 4.99510 5.03321 5.09791 5.16316 5.28290 5.44454 5.46480 5.50487 5.57617 5.84103 6.10304 6.13831 6.49142 7.15913 7.19786 7.48179 8.06444 8.68769 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.032104 B = 0.006091 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.947989 B = 4595.880850 C = 5037.594056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.151 4.151 3 C 0.234 3.766 4 N -0.458 5.458 5 C -0.350 4.350 6 H 0.072 0.928 7 C 0.002 3.998 8 N -0.874 5.874 9 Si 0.981 3.019 10 H -0.276 1.276 11 H -0.265 1.265 12 H -0.282 1.282 13 C 0.441 3.559 14 O -0.622 6.622 15 C -0.116 4.116 16 C -0.062 4.062 17 H 0.055 0.945 18 C -0.089 4.089 19 C -0.167 4.167 20 C -0.157 4.157 21 C -0.089 4.089 22 C -0.110 4.110 23 H 0.231 0.769 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 -8.050 -10.337 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.153 4.153 3 C 0.111 3.889 4 N -0.177 5.177 5 C -0.477 4.477 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.512 5.512 9 Si 0.805 3.195 10 H -0.201 1.201 11 H -0.189 1.189 12 H -0.208 1.208 13 C 0.232 3.768 14 O -0.509 6.509 15 C -0.156 4.156 16 C -0.081 4.081 17 H 0.074 0.926 18 C -0.126 4.126 19 C -0.185 4.185 20 C -0.175 4.175 21 C -0.126 4.126 22 C -0.147 4.147 23 H 0.248 0.752 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.671 -8.179 -9.887 12.849 hybrid contribution -0.059 0.849 1.359 1.604 sum -0.730 -7.329 -8.528 11.269 Atomic orbital electron populations 1.25118 0.96356 1.02651 1.02632 1.23489 0.95035 0.98558 0.98194 1.18310 0.84533 0.97247 0.88781 1.43964 1.56424 1.05208 1.12070 1.19556 1.31417 0.99193 0.97572 0.91006 1.25926 0.95494 0.98436 1.00281 1.70183 1.19965 1.17458 1.43549 0.85078 0.78255 0.78211 0.77943 1.20070 1.18928 1.20764 1.21137 0.82586 0.81789 0.91283 1.90452 1.52478 1.62635 1.45317 1.21647 1.02995 0.96349 0.94638 1.20838 0.98977 0.92000 0.96273 0.92601 1.20473 0.98683 0.93509 0.99935 1.22071 1.02018 0.95288 0.99117 1.22237 0.99369 1.00134 0.95739 1.20508 1.00582 0.94796 0.96704 1.21671 1.02223 0.95693 0.95160 0.75198 0.89144 0.88287 0.91945 0.87768 0.89649 0.93170 0.92191 0.88064 0.86335 0.88726 0.90551 0.89858 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.89 19.25 74.32 1.43 -8.46 16 2 C -0.15 -6.63 10.87 31.13 0.34 -6.29 16 3 C 0.23 10.24 4.91 84.57 0.42 10.66 16 4 N -0.46 -23.55 2.60 -645.41 -1.68 -25.23 16 5 C -0.35 -19.95 9.33 84.04 0.78 -19.17 16 6 H 0.07 4.44 7.38 -2.91 -0.02 4.42 16 7 C 0.00 0.09 4.87 84.93 0.41 0.50 16 8 N -0.87 -46.02 9.48 21.66 0.21 -45.82 16 9 Si 0.98 42.64 29.60 68.60 2.03 44.67 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.44 21.63 7.33 87.66 0.64 22.28 16 14 O -0.62 -35.21 13.74 -3.06 -0.04 -35.25 16 15 C -0.12 -4.18 3.78 29.85 0.11 -4.06 16 16 C -0.06 -2.03 1.87 -10.65 -0.02 -2.05 16 17 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 18 C -0.09 -3.16 5.06 29.66 0.15 -3.01 16 19 C -0.17 -4.86 9.80 27.22 0.27 -4.59 16 20 C -0.16 -3.72 9.78 27.22 0.27 -3.45 16 21 C -0.09 -1.83 6.12 29.66 0.18 -1.64 16 22 C -0.11 -2.58 5.30 30.73 0.16 -2.41 16 23 H 0.23 7.13 7.80 -4.42 -0.03 7.09 16 24 H 0.09 4.24 6.44 -2.39 -0.02 4.22 16 25 H 0.10 3.46 6.69 -2.39 -0.02 3.45 16 26 H 0.27 13.47 8.31 -92.72 -0.77 12.70 16 27 H 0.10 3.12 7.42 -2.39 -0.02 3.10 16 28 H 0.09 2.98 7.45 -2.39 -0.02 2.96 16 29 H 0.05 2.22 6.31 -2.39 -0.02 2.20 16 30 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 31 H 0.10 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 Total: -1.00 -67.73 297.47 6.71 -61.02 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.05 Total: 22.32 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 5.14 Total: -21.71 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.47 Total: -71.04 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.04 Total: -35.25 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.73 6.71 -61.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.892 kcal (2) G-P(sol) polarization free energy of solvation -67.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds