Wall clock time and date at job start Sun Mar 29 2020 22:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99985 * 2 1 4 4 C 1.50694 * 119.99723 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.47195 * 95.00319 * 4 2 1 6 6 C 1.38853 * 120.00078 * 180.02562 * 5 4 2 7 7 C 1.38710 * 120.18545 * 0.02562 * 6 5 4 8 8 C 1.38095 * 120.20844 * 179.97438 * 7 6 5 9 9 C 1.39412 * 120.56634 * 359.97438 * 8 7 6 10 10 O 1.35963 * 119.82023 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00248 * 0.02562 * 10 9 8 12 12 C 1.37842 * 120.36093 * 359.72064 * 9 8 7 13 13 C 1.40707 * 119.78366 * 0.55592 * 12 9 8 14 14 C 1.41025 * 120.27757 * 179.72004 * 13 12 9 15 15 H 1.08007 * 119.99952 * 149.18196 * 14 13 12 16 16 C 1.39900 * 119.99877 * 329.45505 * 14 13 12 17 17 N 1.30892 * 119.99905 * 162.22457 * 16 14 13 18 18 Si 1.86797 * 120.00107 * 342.22252 * 16 14 13 19 19 H 1.48500 * 109.47250 * 95.38230 * 18 16 14 20 20 H 1.48504 * 109.46904 * 215.37850 * 18 16 14 21 21 H 1.48496 * 109.47324 * 335.37678 * 18 16 14 22 22 H 1.07997 * 120.00061 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.00167 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46895 * 239.99948 * 3 2 1 25 25 H 1.09001 * 109.47099 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47052 * 119.99961 * 3 2 1 27 27 H 1.09004 * 109.47814 * 335.00166 * 4 2 1 28 28 H 1.09002 * 109.47027 * 214.99811 * 4 2 1 29 29 H 0.97002 * 120.00204 * 359.97438 * 5 4 2 30 30 H 1.08009 * 119.89775 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.71659 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47174 * 59.99524 * 11 10 9 33 33 H 1.09002 * 109.47571 * 179.97438 * 11 10 9 34 34 H 1.09006 * 109.47185 * 300.00008 * 11 10 9 35 35 H 1.07998 * 120.11225 * 180.27759 * 12 9 8 36 36 H 0.97000 * 120.00380 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3752 6 6 3.1132 -2.8400 -1.6275 7 6 3.4852 -3.6695 -0.5798 8 6 4.1821 -4.8351 -0.8302 9 6 4.5196 -5.1930 -2.1347 10 8 5.2056 -6.3443 -2.3639 11 6 5.5453 -7.1352 -1.2233 12 6 4.1563 -4.3892 -3.1939 13 6 3.4510 -3.1952 -2.9554 14 6 3.0792 -2.3621 -4.0308 15 1 2.1796 -1.7677 -3.9675 16 6 3.8725 -2.3099 -5.1819 17 7 3.3788 -1.8319 -6.2959 18 14 5.6365 -2.9223 -5.1291 19 1 5.6858 -4.3305 -5.5980 20 1 6.4805 -2.0770 -6.0114 21 1 6.1454 -2.8462 -3.7362 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 2.6902 1.3628 -0.8900 25 1 1.3552 2.1336 0.0005 26 1 2.6902 1.3628 0.8900 27 1 1.4386 -2.0853 0.4352 28 1 2.9742 -1.1986 0.5900 29 1 2.1522 -1.0909 -2.1100 30 1 3.2283 -3.4034 0.4349 31 1 4.4674 -5.4753 -0.0086 32 1 4.6347 -7.4351 -0.7048 33 1 6.0888 -8.0234 -1.5457 34 1 6.1714 -6.5505 -0.5492 35 1 4.4159 -4.6726 -4.2031 36 1 3.9289 -1.7953 -7.0940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163381921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:12 Heat of formation + Delta-G solvation = -2.504155 kcal Electronic energy + Delta-G solvation = -17670.577356 eV Core-core repulsion = 14927.070237 eV Total energy + Delta-G solvation = -2743.507119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.95116 -37.45475 -35.91482 -33.49352 -32.69334 -30.41773 -28.43279 -27.19191 -26.41418 -25.15211 -24.49768 -21.31887 -20.03155 -18.41700 -17.65869 -16.60545 -15.91525 -15.36994 -14.90722 -14.71913 -14.57288 -14.32804 -13.83670 -13.32635 -12.99257 -12.65577 -12.50644 -12.23729 -11.94933 -11.67909 -11.57339 -11.47975 -11.06158 -10.82599 -10.75246 -10.55655 -10.25672 -9.88258 -9.55711 -9.11927 -8.97016 -8.49542 -7.62305 -6.86863 -6.18253 -4.29494 2.26571 2.63895 2.88213 3.25287 3.31164 3.43646 4.10025 4.24267 4.58580 4.67486 4.97513 5.08365 5.43940 5.59218 5.61492 5.67994 5.76167 5.85419 5.89541 5.97087 6.01473 6.04224 6.07927 6.19071 6.62854 6.67288 6.70799 6.97573 7.10138 7.19658 7.27926 7.43566 7.67347 7.90428 8.18298 8.34809 8.54401 8.77912 8.84188 8.97433 10.15496 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.008698 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.546234 B = 3218.424065 C = 4598.458630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.135 4.135 3 C -0.118 4.118 4 C 0.169 3.831 5 N -0.742 5.742 6 C 0.110 3.890 7 C -0.145 4.145 8 C -0.275 4.275 9 C 0.112 3.888 10 O -0.333 6.333 11 C 0.037 3.963 12 C -0.243 4.243 13 C 0.081 3.919 14 C -0.447 4.447 15 H 0.089 0.911 16 C 0.087 3.913 17 N -0.814 5.814 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.295 1.295 21 H -0.246 1.246 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.399 0.601 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 0.678 9.936 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.135 4.135 3 C -0.174 4.174 4 C 0.044 3.956 5 N -0.377 5.377 6 C 0.011 3.989 7 C -0.169 4.169 8 C -0.295 4.295 9 C 0.068 3.932 10 O -0.248 6.248 11 C -0.059 4.059 12 C -0.264 4.264 13 C 0.076 3.924 14 C -0.476 4.476 15 H 0.107 0.893 16 C -0.131 4.131 17 N -0.439 5.439 18 Si 0.737 3.263 19 H -0.195 1.195 20 H -0.222 1.222 21 H -0.169 1.169 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.235 0.765 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.147 0.705 9.665 9.692 hybrid contribution 0.607 -0.108 -0.084 0.622 sum 0.460 0.597 9.582 9.611 Atomic orbital electron populations 1.23777 0.95204 1.01796 1.01086 1.21900 0.95509 0.95973 1.00140 1.20860 1.00166 0.93942 1.02477 1.20026 0.97268 0.92059 0.86226 1.43960 1.64115 1.24286 1.05367 1.17783 1.00057 0.88262 0.92827 1.19840 1.04986 0.96027 0.96078 1.20176 1.13632 1.01781 0.93960 1.18612 0.94951 0.85833 0.93835 1.85987 1.71807 1.33525 1.33446 1.22756 0.99534 0.94390 0.89208 1.20027 1.13467 0.96666 0.96201 1.17119 0.92800 0.91682 0.90811 1.19077 1.09130 1.22566 0.96792 0.89280 1.26062 1.01025 0.92178 0.93864 1.69718 1.37924 1.35677 1.00581 0.86296 0.81564 0.78279 0.80121 1.19540 1.22241 1.16883 0.88537 0.88355 0.91075 0.92306 0.91762 0.93168 0.93155 0.76461 0.88599 0.88384 0.93603 0.89903 0.93676 0.87387 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 13.90 29.01 0.40 -1.87 16 2 C -0.13 -1.85 5.42 -101.07 -0.55 -2.40 16 3 C -0.12 -1.43 10.12 36.00 0.36 -1.06 16 4 C 0.17 2.72 5.06 -5.20 -0.03 2.70 16 5 N -0.74 -14.87 5.63 -59.35 -0.33 -15.20 16 6 C 0.11 2.55 6.68 -83.25 -0.56 1.99 16 7 C -0.15 -3.13 9.28 -39.46 -0.37 -3.50 16 8 C -0.27 -5.97 9.03 -39.20 -0.35 -6.32 16 9 C 0.11 2.66 6.67 -39.29 -0.26 2.40 16 10 O -0.33 -7.21 10.49 -19.62 -0.21 -7.41 16 11 C 0.04 0.58 9.81 101.05 0.99 1.57 16 12 C -0.24 -6.24 7.08 -38.79 -0.27 -6.52 16 13 C 0.08 2.08 5.10 -106.65 -0.54 1.53 16 14 C -0.45 -11.93 8.91 -37.90 -0.34 -12.27 16 15 H 0.09 2.44 7.03 -52.48 -0.37 2.07 16 16 C 0.09 2.31 5.41 -17.33 -0.09 2.21 16 17 N -0.81 -21.90 13.93 55.55 0.77 -21.13 16 18 Si 0.91 21.89 24.52 -169.99 -4.17 17.72 16 19 H -0.27 -6.48 6.72 56.52 0.38 -6.10 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.25 -6.12 6.86 56.52 0.39 -5.73 16 22 H 0.10 1.04 7.83 -52.49 -0.41 0.63 16 23 H 0.10 1.24 7.99 -52.49 -0.42 0.82 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.61 7.78 -51.93 -0.40 0.21 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.80 7.78 -51.93 -0.40 0.39 16 28 H 0.05 0.80 7.94 -51.93 -0.41 0.38 16 29 H 0.40 8.25 6.77 -40.82 -0.28 7.97 16 30 H 0.10 1.82 6.71 -52.48 -0.35 1.47 16 31 H 0.10 1.85 6.26 -52.49 -0.33 1.52 16 32 H 0.05 0.67 7.65 -51.93 -0.40 0.27 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 35 H 0.11 2.85 4.79 -52.49 -0.25 2.60 16 36 H 0.28 6.98 8.30 -40.82 -0.34 6.65 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -28.71 296.64 -5.93 -34.64 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.86 Total: 8.45 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -1.60 Total: -21.54 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.44 Total: -36.33 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.21 Total: -7.41 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.17 Total: 17.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.71 -5.93 -34.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163381921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.138 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds