Wall clock time and date at job start Sun Mar 29 2020 22:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99985 * 2 1 4 4 C 1.50694 * 119.99723 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.47195 * 95.00319 * 4 2 1 6 6 C 1.38853 * 120.00078 * 180.02562 * 5 4 2 7 7 C 1.38710 * 120.18545 * 0.02562 * 6 5 4 8 8 C 1.38095 * 120.20844 * 179.97438 * 7 6 5 9 9 C 1.39412 * 120.56634 * 359.97438 * 8 7 6 10 10 O 1.35963 * 119.82023 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00248 * 0.02562 * 10 9 8 12 12 C 1.37842 * 120.36093 * 359.72064 * 9 8 7 13 13 C 1.40707 * 119.78366 * 0.55592 * 12 9 8 14 14 C 1.41025 * 120.27757 * 179.72004 * 13 12 9 15 15 H 1.08007 * 119.99952 * 149.18196 * 14 13 12 16 16 C 1.39900 * 119.99877 * 329.45505 * 14 13 12 17 17 N 1.30892 * 119.99905 * 162.22457 * 16 14 13 18 18 Si 1.86797 * 120.00107 * 342.22252 * 16 14 13 19 19 H 1.48500 * 109.47250 * 95.38230 * 18 16 14 20 20 H 1.48504 * 109.46904 * 215.37850 * 18 16 14 21 21 H 1.48496 * 109.47324 * 335.37678 * 18 16 14 22 22 H 1.07997 * 120.00061 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.00167 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46895 * 239.99948 * 3 2 1 25 25 H 1.09001 * 109.47099 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.47052 * 119.99961 * 3 2 1 27 27 H 1.09004 * 109.47814 * 335.00166 * 4 2 1 28 28 H 1.09002 * 109.47027 * 214.99811 * 4 2 1 29 29 H 0.97002 * 120.00204 * 359.97438 * 5 4 2 30 30 H 1.08009 * 119.89775 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.71659 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47174 * 59.99524 * 11 10 9 33 33 H 1.09002 * 109.47571 * 179.97438 * 11 10 9 34 34 H 1.09006 * 109.47185 * 300.00008 * 11 10 9 35 35 H 1.07998 * 120.11225 * 180.27759 * 12 9 8 36 36 H 0.97000 * 120.00380 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4120 -1.6684 -1.3752 6 6 3.1132 -2.8400 -1.6275 7 6 3.4852 -3.6695 -0.5798 8 6 4.1821 -4.8351 -0.8302 9 6 4.5196 -5.1930 -2.1347 10 8 5.2056 -6.3443 -2.3639 11 6 5.5453 -7.1352 -1.2233 12 6 4.1563 -4.3892 -3.1939 13 6 3.4510 -3.1952 -2.9554 14 6 3.0792 -2.3621 -4.0308 15 1 2.1796 -1.7677 -3.9675 16 6 3.8725 -2.3099 -5.1819 17 7 3.3788 -1.8319 -6.2959 18 14 5.6365 -2.9223 -5.1291 19 1 5.6858 -4.3305 -5.5980 20 1 6.4805 -2.0770 -6.0114 21 1 6.1454 -2.8462 -3.7362 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 2.6902 1.3628 -0.8900 25 1 1.3552 2.1336 0.0005 26 1 2.6902 1.3628 0.8900 27 1 1.4386 -2.0853 0.4352 28 1 2.9742 -1.1986 0.5900 29 1 2.1522 -1.0909 -2.1100 30 1 3.2283 -3.4034 0.4349 31 1 4.4674 -5.4753 -0.0086 32 1 4.6347 -7.4351 -0.7048 33 1 6.0888 -8.0234 -1.5457 34 1 6.1714 -6.5505 -0.5492 35 1 4.4159 -4.6726 -4.2031 36 1 3.9289 -1.7953 -7.0940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163381921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:12 Heat of formation + Delta-G solvation = -20.474703 kcal Electronic energy + Delta-G solvation = -17671.356617 eV Core-core repulsion = 14927.070237 eV Total energy + Delta-G solvation = -2744.286380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65350 -38.98633 -37.28398 -35.36699 -34.19914 -32.28329 -29.98933 -28.21743 -27.78519 -26.83930 -26.10081 -23.10332 -21.75076 -19.68405 -19.41464 -18.36139 -17.51592 -16.95842 -16.53185 -16.33208 -15.96129 -15.64372 -15.23981 -15.08940 -14.37733 -14.08087 -14.03927 -13.77654 -13.65728 -13.22087 -13.09654 -12.66857 -12.64795 -12.50537 -12.23980 -12.00885 -11.86371 -11.70486 -11.39599 -10.94638 -10.11460 -10.08956 -9.50990 -8.85193 -7.92519 -6.25761 0.77310 1.04454 1.20725 1.29818 1.40468 1.48713 2.15881 2.63089 2.77489 3.17151 3.55121 3.87365 4.05204 4.23182 4.44666 4.49632 4.50330 4.59181 4.68667 4.75578 4.82314 4.82869 4.85194 4.90587 4.99841 5.14231 5.27041 5.33963 5.50349 5.63711 5.67134 5.85541 5.93982 6.09123 6.20400 6.51380 6.81079 6.88438 7.10429 7.21829 8.22795 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.008698 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.546234 B = 3218.424065 C = 4598.458630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.152 4.152 3 C -0.115 4.115 4 C 0.167 3.833 5 N -0.743 5.743 6 C 0.107 3.893 7 C -0.148 4.148 8 C -0.254 4.254 9 C 0.095 3.905 10 O -0.355 6.355 11 C 0.026 3.974 12 C -0.259 4.259 13 C 0.054 3.946 14 C -0.467 4.467 15 H 0.068 0.932 16 C 0.055 3.945 17 N -0.851 5.851 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.261 1.261 22 H 0.118 0.882 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.393 0.607 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 0.125 12.637 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.171 4.171 4 C 0.043 3.957 5 N -0.376 5.376 6 C 0.005 3.995 7 C -0.172 4.172 8 C -0.274 4.274 9 C 0.050 3.950 10 O -0.270 6.270 11 C -0.069 4.069 12 C -0.280 4.280 13 C 0.049 3.951 14 C -0.498 4.498 15 H 0.086 0.914 16 C -0.159 4.159 17 N -0.479 5.479 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.185 1.185 22 H 0.136 0.864 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.228 0.772 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.191 0.158 12.392 12.394 hybrid contribution 0.450 -0.078 -0.677 0.817 sum 0.641 0.080 11.714 11.732 Atomic orbital electron populations 1.23988 0.94902 1.02806 0.98902 1.21882 0.95912 0.95539 1.01950 1.20851 1.00396 0.93747 1.02155 1.20209 0.97964 0.93567 0.83931 1.44168 1.63249 1.23179 1.07015 1.18003 0.99688 0.89422 0.92341 1.20230 1.04214 0.95561 0.97160 1.20642 1.11073 1.01570 0.94159 1.18694 0.95652 0.86674 0.94008 1.85954 1.71436 1.33069 1.36541 1.23163 1.00735 0.94830 0.88171 1.20113 1.14093 0.97471 0.96362 1.17261 0.94102 0.91892 0.91854 1.19041 1.09112 1.23622 0.98006 0.91377 1.26529 1.03142 0.92495 0.93716 1.69736 1.38997 1.37983 1.01156 0.85574 0.79080 0.77735 0.79197 1.20119 1.20549 1.18484 0.86382 0.88538 0.92826 0.90508 0.90645 0.92566 0.92485 0.77245 0.85365 0.84761 0.92284 0.86754 0.92456 0.89112 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 13.90 67.77 0.94 -2.91 16 2 C -0.15 -3.90 5.42 -16.50 -0.09 -3.99 16 3 C -0.11 -2.57 10.12 71.24 0.72 -1.85 16 4 C 0.17 5.06 5.06 85.63 0.43 5.50 16 5 N -0.74 -29.44 5.63 -341.69 -1.92 -31.36 16 6 C 0.11 4.86 6.68 38.96 0.26 5.12 16 7 C -0.15 -5.96 9.28 22.35 0.21 -5.76 16 8 C -0.25 -10.23 9.03 22.52 0.20 -10.03 16 9 C 0.09 4.37 6.67 22.46 0.15 4.52 16 10 O -0.35 -14.70 10.49 -93.13 -0.98 -15.68 16 11 C 0.03 0.71 9.81 113.37 1.11 1.82 16 12 C -0.26 -13.50 7.08 22.78 0.16 -13.34 16 13 C 0.05 2.82 5.10 -21.18 -0.11 2.71 16 14 C -0.47 -26.06 8.91 23.36 0.21 -25.85 16 15 H 0.07 3.95 7.03 -2.91 -0.02 3.93 16 16 C 0.06 3.04 5.41 85.24 0.46 3.50 16 17 N -0.85 -47.57 13.93 21.82 0.30 -47.27 16 18 Si 0.96 46.52 24.52 68.60 1.68 48.20 16 19 H -0.27 -13.38 6.72 99.48 0.67 -12.71 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.26 -13.12 6.86 99.48 0.68 -12.43 16 22 H 0.12 2.19 7.83 -2.91 -0.02 2.17 16 23 H 0.10 2.24 7.99 -2.91 -0.02 2.21 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.42 7.78 -2.39 -0.02 1.40 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.64 7.78 -2.38 -0.02 1.62 16 28 H 0.06 1.66 7.94 -2.39 -0.02 1.64 16 29 H 0.39 16.56 6.77 -92.71 -0.63 15.94 16 30 H 0.13 4.33 6.71 -2.91 -0.02 4.31 16 31 H 0.13 4.39 6.26 -2.91 -0.02 4.37 16 32 H 0.06 1.48 7.65 -2.39 -0.02 1.46 16 33 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 1.45 7.65 -2.38 -0.02 1.43 16 35 H 0.09 4.94 4.79 -2.91 -0.01 4.92 16 36 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 Total: -1.00 -63.15 296.64 4.14 -59.01 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.39 Total: 27.63 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 4.66 Total: -40.55 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.62 Total: -78.63 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.98 Total: -15.68 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.68 Total: 48.20 kcal Total: -63.15 4.14 -59.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163381921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.539 kcal (2) G-P(sol) polarization free energy of solvation -63.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds