Wall clock time and date at job start Sun Mar 29 2020 23:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2 11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2 12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7 13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9 14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11 15 15 C 1.39314 * 111.00359 * 174.15890 * 14 13 12 16 16 C 1.39079 * 119.62556 * 304.21444 * 15 14 13 17 17 C 1.38289 * 119.17306 * 179.97438 * 16 15 14 18 18 C 1.39408 * 118.44033 * 0.02562 * 17 16 15 19 19 N 1.40048 * 120.40538 * 180.02562 * 18 17 16 20 20 C 1.38635 * 119.19053 * 359.97438 * 18 17 16 21 21 N 1.31996 * 120.74901 * 359.75041 * 20 18 17 22 22 C 1.46851 * 111.19882 * 298.25989 * 14 13 12 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.52290 * 297.49568 * 11 9 7 25 25 H 1.08998 * 109.52301 * 57.69067 * 11 9 7 26 26 H 1.09007 * 109.50682 * 182.40442 * 12 11 9 27 27 H 1.09005 * 109.50693 * 62.28859 * 12 11 9 28 28 H 1.09000 * 109.46377 * 299.16096 * 13 12 11 29 29 H 1.09003 * 109.46516 * 179.19594 * 13 12 11 30 30 H 1.07997 * 120.41992 * 359.94675 * 16 15 14 31 31 H 1.07997 * 120.77817 * 179.97438 * 17 16 15 32 32 H 0.97001 * 119.99944 * 359.97438 * 19 18 17 33 33 H 0.96995 * 120.00413 * 179.97438 * 19 18 17 34 34 H 1.07997 * 119.62695 * 180.02562 * 20 18 17 35 35 H 1.09002 * 109.45689 * 301.72551 * 22 14 13 36 36 H 1.08994 * 109.46554 * 181.75633 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6233 -2.5529 0.8947 11 6 0.3742 -2.5887 -1.2466 12 6 -0.3413 -3.9423 -1.2632 13 6 0.6987 -5.0642 -1.2213 14 7 1.5114 -4.9348 -0.0051 15 6 2.3812 -6.0145 0.1314 16 6 1.8738 -7.3094 0.1395 17 6 2.7456 -8.3742 0.2751 18 6 4.1078 -8.1053 0.3996 19 7 5.0273 -9.1525 0.5385 20 6 4.5413 -6.7885 0.3831 21 7 3.6813 -5.7966 0.2465 22 6 2.2451 -3.6628 0.0105 23 1 -0.4850 0.8400 0.0004 24 1 -0.3638 -1.7867 -1.2326 25 1 0.9979 -2.4956 -2.1357 26 1 -0.9342 -4.0295 -2.1737 27 1 -0.9948 -4.0193 -0.3941 28 1 1.3431 -4.9950 -2.0977 29 1 0.1921 -6.0293 -1.2185 30 1 0.8121 -7.4813 0.0417 31 1 2.3797 -9.3903 0.2851 32 1 4.7175 -10.0716 0.5490 33 1 5.9738 -8.9587 0.6244 34 1 5.5951 -6.5721 0.4786 35 1 2.8821 -3.6002 -0.8717 36 1 2.8614 -3.6100 0.9079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:04 Heat of formation + Delta-G solvation = 40.086835 kcal Electronic energy + Delta-G solvation = -17836.214156 eV Core-core repulsion = 15126.846672 eV Total energy + Delta-G solvation = -2709.367484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27206 -37.90240 -34.98249 -33.31468 -31.85694 -31.44450 -29.79716 -27.59125 -25.07475 -23.85402 -23.18133 -21.41261 -21.03094 -18.64195 -17.32405 -17.10936 -16.67012 -15.78576 -14.95670 -14.66139 -14.38851 -14.11687 -13.69286 -13.24839 -12.99698 -12.71471 -12.59491 -12.26775 -12.02182 -11.72505 -11.04647 -10.86288 -10.70455 -10.63143 -10.09623 -9.81931 -9.54612 -9.44267 -9.16934 -9.01477 -8.72891 -8.47929 -8.20662 -6.97053 -5.91414 -3.96583 1.46533 1.67846 3.38024 3.41848 3.45251 3.77417 4.02254 4.35244 4.53248 4.85873 4.98630 5.24240 5.38017 5.41782 5.63831 5.76824 5.87787 5.99417 6.07129 6.14660 6.28527 6.51046 6.53721 6.68179 6.70195 6.83706 7.07429 7.19089 7.33657 7.40566 7.55659 7.66403 7.82326 7.92933 8.14009 8.20417 8.45568 8.58041 9.07070 9.67261 11.15025 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.035541 B = 0.005460 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.637403 B = 5126.560208 C = 5786.396193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.050 3.950 10 H 0.033 0.967 11 C -0.113 4.113 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.475 5.475 15 C 0.273 3.727 16 C -0.146 4.146 17 C -0.132 4.132 18 C 0.121 3.879 19 N -0.881 5.881 20 C 0.055 3.945 21 N -0.478 5.478 22 C 0.081 3.919 23 H 0.259 0.741 24 H 0.092 0.908 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.394 0.606 33 H 0.396 0.604 34 H 0.146 0.854 35 H 0.033 0.967 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 -16.869 -1.248 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.031 3.969 10 H 0.051 0.949 11 C -0.151 4.151 12 C -0.157 4.157 13 C -0.058 4.058 14 N -0.193 5.193 15 C 0.039 3.961 16 C -0.169 4.169 17 C -0.163 4.163 18 C 0.016 3.984 19 N -0.423 5.423 20 C -0.108 4.108 21 N -0.191 5.191 22 C -0.045 4.045 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.222 0.778 33 H 0.224 0.776 34 H 0.164 0.836 35 H 0.051 0.949 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.462 -15.754 -0.890 16.398 hybrid contribution 0.938 -0.303 -0.454 1.085 sum 5.400 -16.057 -1.345 16.994 Atomic orbital electron populations 1.69878 1.05828 1.26368 1.50883 1.24921 0.94822 0.98901 0.95182 0.86679 0.79592 0.83240 0.78584 1.20372 1.21383 1.20310 1.21095 0.92922 0.90484 1.50449 0.92717 1.18756 0.92714 0.90655 0.94738 0.94851 1.21690 1.00111 0.94552 0.98709 1.21724 0.96996 0.96307 1.00636 1.22186 0.95363 0.99505 0.88765 1.59342 1.21723 1.02416 1.35799 1.19961 0.87793 0.90827 0.97483 1.21379 1.00572 0.91408 1.03554 1.20830 0.91237 0.99281 1.04961 1.18685 0.90299 0.89828 0.99582 1.42235 1.07885 1.06124 1.86028 1.22017 0.99088 0.86404 1.03264 1.67587 1.02574 1.35313 1.13607 1.22209 0.95811 0.85782 1.00655 0.93068 0.88921 0.94923 0.92929 0.91822 0.94748 0.91701 0.84893 0.85476 0.77807 0.77579 0.83633 0.94868 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.37 55.43 0.63 -25.06 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.40 8.56 -34.44 -0.29 -14.69 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.30 2.26 -91.69 -0.21 1.09 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.69 5.03 -26.61 -0.13 -2.83 16 12 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 13 C 0.07 1.23 5.25 -3.84 -0.02 1.21 16 14 N -0.48 -9.59 4.69 -173.17 -0.81 -10.40 16 15 C 0.27 5.00 6.41 -154.80 -0.99 4.00 16 16 C -0.15 -2.15 9.18 -39.25 -0.36 -2.51 16 17 C -0.13 -1.64 10.04 -39.13 -0.39 -2.03 16 18 C 0.12 1.49 6.79 -83.52 -0.57 0.92 16 19 N -0.88 -7.18 9.11 32.53 0.30 -6.89 16 20 C 0.06 0.81 11.05 -17.33 -0.19 0.62 16 21 N -0.48 -8.83 8.68 -12.23 -0.11 -8.93 16 22 C 0.08 1.88 3.87 -3.83 -0.01 1.87 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.09 2.46 6.18 -51.93 -0.32 2.13 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.98 6.67 -51.93 -0.35 0.64 16 30 H 0.13 1.74 7.14 -52.49 -0.37 1.36 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.39 2.42 8.86 -40.82 -0.36 2.06 16 33 H 0.40 2.55 8.86 -40.82 -0.36 2.18 16 34 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.07 1.69 7.71 -51.93 -0.40 1.29 16 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -30.88 290.94 -9.15 -40.02 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.09 Total: 3.38 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.43 Total: -13.16 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.01 Total: -51.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.88 -9.15 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.111 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds