Wall clock time and date at job start Sun Mar 29 2020 23:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2 11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2 12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7 13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9 14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11 15 15 C 1.39314 * 111.00359 * 174.15890 * 14 13 12 16 16 C 1.39079 * 119.62556 * 304.21444 * 15 14 13 17 17 C 1.38289 * 119.17306 * 179.97438 * 16 15 14 18 18 C 1.39408 * 118.44033 * 0.02562 * 17 16 15 19 19 N 1.40048 * 120.40538 * 180.02562 * 18 17 16 20 20 C 1.38635 * 119.19053 * 359.97438 * 18 17 16 21 21 N 1.31996 * 120.74901 * 359.75041 * 20 18 17 22 22 C 1.46851 * 111.19882 * 298.25989 * 14 13 12 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.52290 * 297.49568 * 11 9 7 25 25 H 1.08998 * 109.52301 * 57.69067 * 11 9 7 26 26 H 1.09007 * 109.50682 * 182.40442 * 12 11 9 27 27 H 1.09005 * 109.50693 * 62.28859 * 12 11 9 28 28 H 1.09000 * 109.46377 * 299.16096 * 13 12 11 29 29 H 1.09003 * 109.46516 * 179.19594 * 13 12 11 30 30 H 1.07997 * 120.41992 * 359.94675 * 16 15 14 31 31 H 1.07997 * 120.77817 * 179.97438 * 17 16 15 32 32 H 0.97001 * 119.99944 * 359.97438 * 19 18 17 33 33 H 0.96995 * 120.00413 * 179.97438 * 19 18 17 34 34 H 1.07997 * 119.62695 * 180.02562 * 20 18 17 35 35 H 1.09002 * 109.45689 * 301.72551 * 22 14 13 36 36 H 1.08994 * 109.46554 * 181.75633 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6233 -2.5529 0.8947 11 6 0.3742 -2.5887 -1.2466 12 6 -0.3413 -3.9423 -1.2632 13 6 0.6987 -5.0642 -1.2213 14 7 1.5114 -4.9348 -0.0051 15 6 2.3812 -6.0145 0.1314 16 6 1.8738 -7.3094 0.1395 17 6 2.7456 -8.3742 0.2751 18 6 4.1078 -8.1053 0.3996 19 7 5.0273 -9.1525 0.5385 20 6 4.5413 -6.7885 0.3831 21 7 3.6813 -5.7966 0.2465 22 6 2.2451 -3.6628 0.0105 23 1 -0.4850 0.8400 0.0004 24 1 -0.3638 -1.7867 -1.2326 25 1 0.9979 -2.4956 -2.1357 26 1 -0.9342 -4.0295 -2.1737 27 1 -0.9948 -4.0193 -0.3941 28 1 1.3431 -4.9950 -2.0977 29 1 0.1921 -6.0293 -1.2185 30 1 0.8121 -7.4813 0.0417 31 1 2.3797 -9.3903 0.2851 32 1 4.7175 -10.0716 0.5490 33 1 5.9738 -8.9587 0.6244 34 1 5.5951 -6.5721 0.4786 35 1 2.8821 -3.6002 -0.8717 36 1 2.8614 -3.6100 0.9079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:03 Heat of formation + Delta-G solvation = 19.021802 kcal Electronic energy + Delta-G solvation = -17837.127604 eV Core-core repulsion = 15126.846672 eV Total energy + Delta-G solvation = -2710.280932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50574 -39.38160 -36.27790 -35.01015 -33.27354 -32.84197 -31.61532 -28.77241 -27.04168 -25.29778 -24.52870 -22.93121 -22.48315 -20.43201 -18.84127 -18.14392 -17.97259 -17.40154 -16.52419 -16.03127 -15.89774 -15.43247 -15.13529 -14.80281 -14.50030 -14.28048 -14.02677 -13.89046 -13.49139 -13.16087 -12.83515 -12.66806 -12.53196 -12.13681 -11.85783 -11.75406 -11.41955 -10.98020 -10.78105 -10.59176 -10.38931 -10.27188 -9.81814 -8.09012 -8.07495 -6.21344 0.38476 0.57328 1.41561 1.43613 1.51324 2.43362 2.74958 3.00542 3.14518 3.19101 3.71934 4.03593 4.12873 4.18003 4.24913 4.30049 4.47773 4.59334 4.73423 4.83421 4.88518 4.94879 5.04946 5.11160 5.12998 5.19831 5.37511 5.45098 5.61008 5.64407 5.87724 6.05852 6.16208 6.41555 6.42711 6.58784 6.88255 7.05125 7.31730 7.45897 8.97360 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.035541 B = 0.005460 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.637403 B = 5126.560208 C = 5786.396193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.050 3.950 10 H -0.003 1.003 11 C -0.105 4.105 12 C -0.110 4.110 13 C 0.071 3.929 14 N -0.486 5.486 15 C 0.229 3.771 16 C -0.139 4.139 17 C -0.131 4.131 18 C 0.143 3.857 19 N -0.860 5.860 20 C 0.030 3.970 21 N -0.517 5.517 22 C 0.107 3.893 23 H 0.262 0.738 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.104 0.896 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.410 0.590 33 H 0.408 0.592 34 H 0.162 0.838 35 H 0.015 0.985 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -19.500 -1.602 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.064 0.936 9 C 0.031 3.969 10 H 0.015 0.985 11 C -0.143 4.143 12 C -0.148 4.148 13 C -0.055 4.055 14 N -0.204 5.204 15 C -0.003 4.003 16 C -0.162 4.162 17 C -0.161 4.161 18 C 0.035 3.965 19 N -0.402 5.402 20 C -0.133 4.133 21 N -0.231 5.231 22 C -0.020 4.020 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.122 0.878 30 H 0.169 0.831 31 H 0.185 0.815 32 H 0.240 0.760 33 H 0.237 0.763 34 H 0.179 0.821 35 H 0.034 0.966 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.021 -18.452 -1.238 19.163 hybrid contribution 0.896 0.346 -0.310 1.009 sum 5.916 -18.106 -1.548 19.111 Atomic orbital electron populations 1.70011 1.07036 1.27230 1.50987 1.25685 0.95724 1.02175 0.94595 0.85666 0.78471 0.79085 0.78744 1.19706 1.20455 1.19886 1.21423 0.92803 0.92224 1.51251 0.93606 1.18667 0.92937 0.91217 0.94070 0.98453 1.21482 0.99105 0.96652 0.97088 1.21627 0.97204 0.94069 1.01896 1.22234 0.94710 1.00539 0.87998 1.59368 1.22370 1.01552 1.37119 1.20045 0.87841 0.91386 1.01077 1.21557 1.01904 0.90292 1.02403 1.21228 0.90781 1.00441 1.03689 1.18735 0.91155 0.89803 0.96817 1.42232 1.08029 1.06000 1.83978 1.22325 0.99415 0.87098 1.04417 1.67423 1.03438 1.37637 1.14563 1.21644 0.94604 0.87138 0.98601 0.92913 0.91803 0.95897 0.89926 0.92321 0.95394 0.87828 0.83079 0.81537 0.76008 0.76274 0.82100 0.96629 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.32 11.37 21.45 0.24 -54.08 16 2 C 0.02 0.99 5.31 84.65 0.45 1.44 16 3 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.54 -31.82 8.56 25.60 0.22 -31.61 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.73 2.26 -11.49 -0.03 2.71 16 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 11 C -0.11 -5.23 5.03 30.67 0.15 -5.07 16 12 C -0.11 -4.26 6.09 30.65 0.19 -4.08 16 13 C 0.07 2.51 5.25 86.33 0.45 2.96 16 14 N -0.49 -19.93 4.69 -701.78 -3.29 -23.22 16 15 C 0.23 8.32 6.41 132.97 0.85 9.17 16 16 C -0.14 -3.75 9.18 22.48 0.21 -3.54 16 17 C -0.13 -2.73 10.04 22.56 0.23 -2.50 16 18 C 0.14 3.05 6.79 38.20 0.26 3.31 16 19 N -0.86 -10.46 9.11 -51.00 -0.46 -10.92 16 20 C 0.03 0.86 11.05 84.76 0.94 1.79 16 21 N -0.52 -19.33 8.68 -192.62 -1.67 -21.00 16 22 C 0.11 5.25 3.87 86.33 0.33 5.58 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.06 3.53 6.18 -2.39 -0.01 3.51 16 25 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 2.85 6.67 -2.39 -0.02 2.84 16 30 H 0.15 3.42 7.14 -2.91 -0.02 3.40 16 31 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.41 3.01 8.86 -92.71 -0.82 2.19 16 33 H 0.41 3.67 8.86 -92.71 -0.82 2.85 16 34 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.02 0.79 8.11 -2.39 -0.02 0.77 16 36 H 0.05 2.44 7.71 -2.39 -0.02 2.43 16 Total: -1.00 -70.84 290.94 0.55 -70.29 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.55 Total: 11.38 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.25 Total: -19.84 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -5.18 Total: -109.22 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.84 0.55 -70.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.314 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds