Wall clock time and date at job start Sun Mar 29 2020 23:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 120.00227 * 2 1 4 4 H 1.48504 * 109.47253 * 174.63891 * 3 2 1 5 5 H 1.48506 * 109.47288 * 294.63544 * 3 2 1 6 6 H 1.48502 * 109.47263 * 54.63867 * 3 2 1 7 7 C 1.37882 * 119.99396 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84660 * 164.69216 * 7 2 1 9 9 C 1.53224 * 108.53306 * 231.07095 * 8 7 2 10 10 C 1.52953 * 109.40503 * 305.36824 * 9 8 7 11 11 H 1.09003 * 109.41822 * 303.49387 * 10 9 8 12 12 N 1.46505 * 109.35448 * 183.67025 * 10 9 8 13 13 C 1.39703 * 120.00027 * 84.68798 * 12 10 9 14 14 C 1.38994 * 120.45191 * 359.97438 * 13 12 10 15 15 N 1.31784 * 120.81689 * 180.02562 * 14 13 12 16 16 C 1.31809 * 121.87576 * 359.97438 * 15 14 13 17 17 C 1.38952 * 120.82030 * 359.97438 * 16 15 14 18 18 N 1.39701 * 120.45455 * 180.02562 * 17 16 15 19 19 C 1.39122 * 120.45380 * 179.72473 * 13 12 10 20 20 C 1.52952 * 109.81577 * 63.60515 * 10 9 8 21 21 C 1.51269 * 120.85140 * 344.40508 * 7 2 1 22 22 H 0.97002 * 119.99550 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.62310 * 350.78146 * 8 7 2 24 24 H 1.08994 * 109.62720 * 111.35499 * 8 7 2 25 25 H 1.09006 * 109.48183 * 185.39226 * 9 8 7 26 26 H 1.08996 * 109.49820 * 65.36061 * 9 8 7 27 27 H 0.96997 * 120.00225 * 264.68405 * 12 10 9 28 28 H 1.08002 * 119.58906 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.59520 * 180.02562 * 16 15 14 30 30 H 0.97000 * 119.99919 * 359.97438 * 18 17 16 31 31 H 0.96996 * 120.00191 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.85418 * 359.97340 * 19 13 12 33 33 H 1.09005 * 109.48353 * 176.42316 * 20 10 9 34 34 H 1.08998 * 109.49816 * 56.38790 * 20 10 9 35 35 H 1.09006 * 109.62574 * 248.64137 * 21 7 2 36 36 H 1.08995 * 109.62783 * 9.02574 * 21 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7040 1.3493 0.1308 5 1 1.9913 2.3382 -1.2727 6 1 1.7951 2.4515 1.1418 7 6 2.0045 -1.1942 0.0005 8 6 3.4771 -1.2399 -0.3423 9 6 3.6937 -2.3086 -1.4187 10 6 3.1175 -3.6405 -0.9355 11 1 3.5770 -3.9106 0.0153 12 7 3.4023 -4.6810 -1.9269 13 6 4.6293 -5.3486 -1.9059 14 6 5.5867 -5.0330 -0.9490 15 7 6.7467 -5.6579 -0.9229 16 6 7.0491 -6.6009 -1.7928 17 6 6.1456 -6.9751 -2.7799 18 7 6.4738 -7.9759 -3.6976 19 6 4.9075 -6.3421 -2.8392 20 6 1.6043 -3.5145 -0.7514 21 6 1.3090 -2.4912 0.3502 22 1 -0.4849 0.8401 -0.0004 23 1 3.7950 -0.2686 -0.7216 24 1 4.0525 -1.4947 0.5476 25 1 4.7610 -2.4220 -1.6090 26 1 3.1907 -2.0068 -2.3374 27 1 2.7390 -4.9063 -2.5978 28 1 5.3778 -4.2655 -0.2184 29 1 8.0107 -7.0893 -1.7372 30 1 7.3376 -8.4145 -3.6487 31 1 5.8380 -8.2323 -4.3838 32 1 4.1825 -6.6132 -3.5924 33 1 1.1906 -4.4826 -0.4685 34 1 1.1503 -3.1842 -1.6856 35 1 1.6837 -2.8619 1.3044 36 1 0.2342 -2.3232 0.4193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:11 Heat of formation + Delta-G solvation = 0.381580 kcal Electronic energy + Delta-G solvation = -17680.225375 eV Core-core repulsion = 14969.136142 eV Total energy + Delta-G solvation = -2711.089233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10567 -39.10021 -36.31765 -35.59667 -33.82390 -31.60268 -31.06750 -29.48165 -28.31187 -24.52775 -24.21978 -23.18422 -22.47961 -21.06508 -18.71320 -18.09199 -17.87484 -17.40877 -16.42339 -16.35992 -15.92557 -15.28181 -15.25509 -14.97074 -14.54463 -14.24787 -13.97003 -13.75893 -13.42347 -13.00828 -12.88742 -12.75623 -12.49154 -12.16636 -11.85947 -11.77883 -11.58840 -11.27966 -10.82822 -10.63069 -10.37103 -10.34797 -8.83506 -8.23617 -8.18753 -6.06288 0.64721 0.69369 1.37393 1.44363 1.53485 2.42540 2.44969 3.04877 3.11124 3.14614 3.96830 4.04446 4.17474 4.21355 4.24211 4.43419 4.51788 4.61050 4.74929 4.95970 5.01107 5.10442 5.12980 5.20204 5.25473 5.30702 5.36744 5.60329 5.63174 5.69660 5.76406 5.86886 6.35963 6.36916 6.51274 6.86945 6.97068 7.03388 7.37458 7.48918 8.92287 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.005044 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.910476 B = 5550.217592 C = 5867.482226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.028 3.972 3 Si 0.930 3.070 4 H -0.248 1.248 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.502 4.502 8 C -0.017 4.017 9 C -0.109 4.109 10 C 0.172 3.828 11 H 0.067 0.933 12 N -0.725 5.725 13 C 0.218 3.782 14 C -0.061 4.061 15 N -0.433 5.433 16 C -0.055 4.055 17 C 0.219 3.781 18 N -0.853 5.853 19 C -0.255 4.255 20 C -0.100 4.100 21 C 0.008 3.992 22 H 0.262 0.738 23 H 0.031 0.969 24 H 0.019 0.981 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.404 0.596 28 H 0.137 0.863 29 H 0.165 0.835 30 H 0.411 0.589 31 H 0.408 0.592 32 H 0.146 0.854 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.005 0.995 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.296 -13.993 -8.097 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.172 1.172 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.521 4.521 8 C -0.055 4.055 9 C -0.148 4.148 10 C 0.068 3.932 11 H 0.085 0.915 12 N -0.351 5.351 13 C 0.108 3.892 14 C -0.224 4.224 15 N -0.141 5.141 16 C -0.220 4.220 17 C 0.109 3.891 18 N -0.393 5.393 19 C -0.290 4.290 20 C -0.138 4.138 21 C -0.030 4.030 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.240 0.760 28 H 0.154 0.846 29 H 0.182 0.818 30 H 0.242 0.758 31 H 0.238 0.762 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.709 -13.495 -7.291 18.707 hybrid contribution -0.941 0.702 -0.907 1.484 sum 9.768 -12.793 -8.199 18.064 Atomic orbital electron populations 1.70028 1.07685 1.27431 1.51166 1.25533 0.95144 1.01634 0.94823 0.85955 0.80681 0.80361 0.77416 1.17193 1.20958 1.21385 1.20573 0.93921 0.92721 1.44896 1.19766 0.95156 0.95567 0.94994 1.21857 0.98378 0.95606 0.98939 1.20666 0.95744 0.86192 0.90639 0.91543 1.44928 1.14818 1.39804 1.35554 1.18718 0.86768 0.90409 0.93262 1.21993 0.91273 1.06242 1.02937 1.67208 1.18420 1.05450 1.23008 1.22277 1.01634 1.01702 0.96416 1.18539 0.92483 0.88399 0.89706 1.42308 1.22208 1.40446 1.34324 1.20538 0.99197 1.03755 1.05547 1.21648 0.93798 0.98297 1.00092 1.19325 0.97377 0.93095 0.93225 0.92838 0.95036 0.96233 0.93318 0.93608 0.76041 0.84590 0.81776 0.75808 0.76161 0.83585 0.92798 0.93508 0.97711 0.95314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.50 12.81 21.45 0.27 -53.22 16 2 C 0.03 1.50 5.43 84.65 0.46 1.96 16 3 Si 0.93 42.78 27.63 68.60 1.90 44.68 16 4 H -0.25 -10.80 6.14 99.48 0.61 -10.19 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.50 -25.91 5.44 -16.17 -0.09 -26.00 16 8 C -0.02 -0.75 5.46 30.10 0.16 -0.59 16 9 C -0.11 -4.26 5.43 30.65 0.17 -4.10 16 10 C 0.17 6.21 2.05 44.96 0.09 6.30 16 11 H 0.07 2.50 6.51 -2.39 -0.02 2.48 16 12 N -0.72 -21.63 5.25 -318.82 -1.67 -23.30 16 13 C 0.22 6.46 6.65 38.28 0.25 6.72 16 14 C -0.06 -2.01 10.00 84.88 0.85 -1.16 16 15 N -0.43 -13.92 10.34 -194.72 -2.01 -15.94 16 16 C -0.06 -1.40 11.05 84.87 0.94 -0.46 16 17 C 0.22 4.72 6.78 38.28 0.26 4.98 16 18 N -0.85 -10.48 9.10 -51.16 -0.47 -10.95 16 19 C -0.25 -6.14 9.91 22.71 0.23 -5.91 16 20 C -0.10 -3.98 5.40 30.66 0.17 -3.81 16 21 C 0.01 0.38 5.99 30.11 0.18 0.56 16 22 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 23 H 0.03 1.41 5.03 -2.38 -0.01 1.40 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 1.80 7.75 -2.38 -0.02 1.78 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.40 10.52 8.62 -92.71 -0.80 9.72 16 28 H 0.14 4.79 6.18 -2.91 -0.02 4.77 16 29 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.41 3.25 8.85 -92.71 -0.82 2.43 16 31 H 0.41 3.52 8.85 -92.71 -0.82 2.70 16 32 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.03 1.55 7.11 -2.39 -0.02 1.53 16 Total: -1.00 -62.30 289.14 0.27 -62.03 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -1.41 Total: 18.20 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.67 Total: -21.50 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -3.88 Total: -103.41 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.90 Total: 44.68 kcal Total: -62.30 0.27 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.409 kcal (2) G-P(sol) polarization free energy of solvation -62.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds