Wall clock time and date at job start Sun Mar 29 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46930 * 2 1 4 4 C 1.32091 * 119.99891 * 124.99692 * 3 2 1 5 5 N 1.38848 * 119.99723 * 179.97438 * 4 3 2 6 6 C 1.38871 * 119.99773 * 179.97438 * 5 4 3 7 7 C 1.39757 * 119.80018 * 359.97438 * 6 5 4 8 8 C 1.36206 * 120.42154 * 179.71376 * 7 6 5 9 9 C 1.40874 * 120.01170 * 0.56016 * 8 7 6 10 10 C 1.40935 * 120.19868 * 179.74045 * 9 8 7 11 11 H 1.07993 * 120.00322 * 154.36458 * 10 9 8 12 12 C 1.39829 * 119.99937 * 334.36358 * 10 9 8 13 13 N 1.30968 * 119.99915 * 334.60500 * 12 10 9 14 14 Si 1.86799 * 120.00036 * 154.60327 * 12 10 9 15 15 H 1.48507 * 109.46935 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46935 * 300.00172 * 14 12 10 17 17 H 1.48499 * 109.46955 * 60.00006 * 14 12 10 18 18 C 1.41482 * 119.60552 * 359.46710 * 9 8 7 19 19 O 1.35682 * 120.20649 * 180.23029 * 18 9 8 20 20 C 1.42902 * 116.99442 * 179.97438 * 19 18 9 21 21 C 1.37992 * 119.58031 * 0.24925 * 18 9 8 22 22 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 23 23 H 1.08989 * 109.47491 * 300.00284 * 1 2 3 24 24 H 1.09001 * 109.46718 * 60.00314 * 1 2 3 25 25 H 1.08998 * 109.47771 * 239.99840 * 2 1 3 26 26 H 1.09008 * 109.47051 * 119.99091 * 2 1 3 27 27 H 1.08000 * 120.00307 * 304.99157 * 3 2 1 28 28 H 1.07994 * 120.00324 * 359.97438 * 4 3 2 29 29 H 0.97001 * 120.00025 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.79230 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.99417 * 180.30072 * 8 7 6 32 32 H 0.97001 * 119.99990 * 354.18444 * 13 12 10 33 33 H 1.09004 * 109.46768 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.47476 * 299.99888 * 20 19 18 35 35 H 1.08995 * 109.47088 * 60.00436 * 20 19 18 36 36 H 1.08007 * 120.01041 * 180.02562 * 21 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8710 1.8248 0.9371 5 7 3.3341 3.1338 0.9368 6 6 4.2155 3.5587 1.9223 7 6 4.6331 2.6654 2.9127 8 6 5.5017 3.0670 3.8819 9 6 5.9760 4.3934 3.8974 10 6 6.8706 4.8147 4.9017 11 1 7.5429 5.6389 4.7149 12 6 6.8877 4.1654 6.1399 13 7 5.8174 3.5439 6.5683 14 14 8.4370 4.1845 7.1832 15 1 8.1971 3.4301 8.4397 16 1 9.5487 3.5503 6.4302 17 1 8.7972 5.5879 7.5090 18 6 5.5534 5.2986 2.8955 19 8 6.0063 6.5776 2.8961 20 6 5.5358 7.4328 1.8523 21 6 4.6776 4.8725 1.9180 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.7066 2.1088 -0.7662 28 1 3.1964 1.1371 1.7035 29 1 3.0415 3.7516 0.2486 30 1 4.2680 1.6491 2.9071 31 1 5.8236 2.3696 4.6411 32 1 4.9886 3.6044 6.0680 33 1 5.9738 8.4240 1.9695 34 1 5.8254 7.0199 0.8860 35 1 4.4496 7.5066 1.9050 36 1 4.3508 5.5575 1.1496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170767455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:25 Heat of formation + Delta-G solvation = -14.306780 kcal Electronic energy + Delta-G solvation = -17234.337593 eV Core-core repulsion = 14490.318674 eV Total energy + Delta-G solvation = -2744.018919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.09619 -37.48055 -35.85154 -34.35640 -32.77802 -29.76192 -29.14354 -27.71000 -26.53477 -24.44571 -22.84828 -21.42056 -20.58108 -19.35455 -18.08861 -17.03420 -16.16326 -15.17119 -14.83070 -14.73119 -14.47357 -13.91826 -13.89043 -13.40361 -12.99740 -12.74475 -12.61562 -12.12261 -11.87300 -11.65508 -11.47349 -11.07502 -11.02942 -10.96880 -10.78394 -10.63317 -10.36673 -10.07868 -9.86515 -9.52136 -8.94221 -8.11283 -7.42539 -7.11854 -6.59919 -4.15353 2.40340 2.70796 3.07123 3.21203 3.37355 3.41779 4.06537 4.08980 4.36843 4.58552 5.14525 5.34488 5.40498 5.50927 5.55529 5.64134 5.70490 5.79697 5.93374 5.96385 6.03646 6.13977 6.18864 6.29773 6.45654 6.53096 6.77734 6.94077 6.98618 7.21676 7.39357 7.56374 7.77445 8.00951 8.09489 8.30439 8.33227 8.40359 8.87786 8.93281 10.12897 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.005475 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.876773 B = 5112.724657 C = 6165.272662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.317 4.317 4 C 0.133 3.867 5 N -0.668 5.668 6 C 0.062 3.938 7 C -0.148 4.148 8 C -0.173 4.173 9 C 0.065 3.935 10 C -0.506 4.506 11 H 0.079 0.921 12 C 0.036 3.964 13 N -0.804 5.804 14 Si 1.065 2.935 15 H -0.275 1.275 16 H -0.275 1.275 17 H -0.277 1.277 18 C 0.040 3.960 19 O -0.308 6.308 20 C 0.034 3.966 21 C -0.210 4.210 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.392 0.608 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.297 0.703 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -1.209 -7.809 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.345 4.345 4 C 0.012 3.988 5 N -0.285 5.285 6 C -0.033 4.033 7 C -0.169 4.169 8 C -0.193 4.193 9 C 0.062 3.938 10 C -0.534 4.534 11 H 0.097 0.903 12 C -0.184 4.184 13 N -0.428 5.428 14 Si 0.889 3.111 15 H -0.200 1.200 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.006 4.006 19 O -0.222 6.222 20 C -0.062 4.062 21 C -0.232 4.232 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.226 0.774 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.264 -1.736 -6.072 7.109 hybrid contribution -1.119 0.959 -2.140 2.598 sum -4.383 -0.777 -8.212 9.341 Atomic orbital electron populations 1.21735 0.96375 1.00588 1.01605 1.20075 0.94951 0.93935 1.00928 1.21953 1.09623 0.98528 1.04386 1.21038 0.94021 0.86166 0.97612 1.41763 1.47387 1.09843 1.29498 1.16952 0.99315 0.93650 0.93418 1.20020 1.02642 0.97474 0.96759 1.20511 1.02792 0.94999 1.00971 1.17066 0.94230 0.89862 0.92685 1.20279 1.18009 1.16847 0.98306 0.90326 1.26966 1.02855 0.91485 0.97072 1.70520 1.01715 1.31763 1.38841 0.83640 0.73953 0.77599 0.75923 1.19985 1.20091 1.20215 1.18839 0.99053 0.83355 0.99303 1.86005 1.67600 1.19959 1.48626 1.22756 0.98834 0.93902 0.90714 1.20144 1.05841 0.95228 1.01988 0.93418 0.92867 0.93224 0.92684 0.92508 0.88543 0.85024 0.77432 0.88510 0.86610 0.88961 0.89816 0.94193 0.94129 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.06 -0.74 6.38 -27.88 -0.18 -0.92 16 3 C -0.32 -4.53 9.32 -36.23 -0.34 -4.87 16 4 C 0.13 2.16 9.67 -16.29 -0.16 2.00 16 5 N -0.67 -11.84 5.50 -10.54 -0.06 -11.90 16 6 C 0.06 1.33 6.64 -83.72 -0.56 0.77 16 7 C -0.15 -3.33 9.23 -39.75 -0.37 -3.70 16 8 C -0.17 -4.33 7.88 -39.32 -0.31 -4.64 16 9 C 0.07 1.73 5.31 -106.64 -0.57 1.16 16 10 C -0.51 -13.67 8.63 -37.97 -0.33 -14.00 16 11 H 0.08 2.14 7.71 -52.49 -0.40 1.73 16 12 C 0.04 0.93 4.93 -17.33 -0.09 0.85 16 13 N -0.80 -21.41 12.32 55.54 0.68 -20.72 16 14 Si 1.06 21.87 30.00 -169.99 -5.10 16.78 16 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 18 C 0.04 0.97 6.71 -38.44 -0.26 0.71 16 19 O -0.31 -7.09 9.79 -18.75 -0.18 -7.27 16 20 C 0.03 0.57 9.81 101.05 0.99 1.56 16 21 C -0.21 -4.59 8.86 -39.29 -0.35 -4.93 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.68 7.81 -51.92 -0.41 0.28 16 27 H 0.10 1.34 8.04 -52.49 -0.42 0.92 16 28 H 0.13 2.14 5.71 -52.49 -0.30 1.84 16 29 H 0.39 6.14 8.65 -40.82 -0.35 5.79 16 30 H 0.10 1.96 5.91 -52.49 -0.31 1.65 16 31 H 0.12 2.98 6.48 -52.48 -0.34 2.64 16 32 H 0.30 8.11 6.69 -40.82 -0.27 7.84 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 36 H 0.10 1.90 6.29 -52.48 -0.33 1.57 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -28.03 301.52 -7.09 -35.12 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.84 Total: 10.67 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -2.13 Total: -27.22 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.63 Total: -32.62 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.18 Total: -7.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.10 Total: 16.78 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.03 -7.09 -35.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170767455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.816 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds