Wall clock time and date at job start Sun Mar 29 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46930 * 2 1 4 4 C 1.32091 * 119.99891 * 124.99692 * 3 2 1 5 5 N 1.38848 * 119.99723 * 179.97438 * 4 3 2 6 6 C 1.38871 * 119.99773 * 179.97438 * 5 4 3 7 7 C 1.39757 * 119.80018 * 359.97438 * 6 5 4 8 8 C 1.36206 * 120.42154 * 179.71376 * 7 6 5 9 9 C 1.40874 * 120.01170 * 0.56016 * 8 7 6 10 10 C 1.40935 * 120.19868 * 179.74045 * 9 8 7 11 11 H 1.07993 * 120.00322 * 154.36458 * 10 9 8 12 12 C 1.39829 * 119.99937 * 334.36358 * 10 9 8 13 13 N 1.30968 * 119.99915 * 334.60500 * 12 10 9 14 14 Si 1.86799 * 120.00036 * 154.60327 * 12 10 9 15 15 H 1.48507 * 109.46935 * 180.02562 * 14 12 10 16 16 H 1.48500 * 109.46935 * 300.00172 * 14 12 10 17 17 H 1.48499 * 109.46955 * 60.00006 * 14 12 10 18 18 C 1.41482 * 119.60552 * 359.46710 * 9 8 7 19 19 O 1.35682 * 120.20649 * 180.23029 * 18 9 8 20 20 C 1.42902 * 116.99442 * 179.97438 * 19 18 9 21 21 C 1.37992 * 119.58031 * 0.24925 * 18 9 8 22 22 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 23 23 H 1.08989 * 109.47491 * 300.00284 * 1 2 3 24 24 H 1.09001 * 109.46718 * 60.00314 * 1 2 3 25 25 H 1.08998 * 109.47771 * 239.99840 * 2 1 3 26 26 H 1.09008 * 109.47051 * 119.99091 * 2 1 3 27 27 H 1.08000 * 120.00307 * 304.99157 * 3 2 1 28 28 H 1.07994 * 120.00324 * 359.97438 * 4 3 2 29 29 H 0.97001 * 120.00025 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.79230 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.99417 * 180.30072 * 8 7 6 32 32 H 0.97001 * 119.99990 * 354.18444 * 13 12 10 33 33 H 1.09004 * 109.46768 * 180.02562 * 20 19 18 34 34 H 1.09000 * 109.47476 * 299.99888 * 20 19 18 35 35 H 1.08995 * 109.47088 * 60.00436 * 20 19 18 36 36 H 1.08007 * 120.01041 * 180.02562 * 21 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8710 1.8248 0.9371 5 7 3.3341 3.1338 0.9368 6 6 4.2155 3.5587 1.9223 7 6 4.6331 2.6654 2.9127 8 6 5.5017 3.0670 3.8819 9 6 5.9760 4.3934 3.8974 10 6 6.8706 4.8147 4.9017 11 1 7.5429 5.6389 4.7149 12 6 6.8877 4.1654 6.1399 13 7 5.8174 3.5439 6.5683 14 14 8.4370 4.1845 7.1832 15 1 8.1971 3.4301 8.4397 16 1 9.5487 3.5503 6.4302 17 1 8.7972 5.5879 7.5090 18 6 5.5534 5.2986 2.8955 19 8 6.0063 6.5776 2.8961 20 6 5.5358 7.4328 1.8523 21 6 4.6776 4.8725 1.9180 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.7066 2.1088 -0.7662 28 1 3.1964 1.1371 1.7035 29 1 3.0415 3.7516 0.2486 30 1 4.2680 1.6491 2.9071 31 1 5.8236 2.3696 4.6411 32 1 4.9886 3.6044 6.0680 33 1 5.9738 8.4240 1.9695 34 1 5.8254 7.0199 0.8860 35 1 4.4496 7.5066 1.9050 36 1 4.3508 5.5575 1.1496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170767455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:25 Heat of formation + Delta-G solvation = -29.593642 kcal Electronic energy + Delta-G solvation = -17235.000481 eV Core-core repulsion = 14490.318674 eV Total energy + Delta-G solvation = -2744.681807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82437 -39.03061 -37.48571 -35.81590 -34.29713 -31.31677 -30.91409 -29.13828 -28.03189 -26.18329 -24.12095 -23.07671 -22.16651 -20.73090 -19.93065 -18.67057 -17.63133 -16.73222 -16.41787 -16.34850 -16.13732 -15.51229 -14.94586 -14.80618 -14.60091 -14.30365 -14.24008 -13.55206 -13.36084 -12.98005 -12.88384 -12.69693 -12.48691 -12.34499 -11.96237 -11.94118 -11.84097 -11.72710 -11.48063 -11.30432 -10.77360 -9.77835 -9.26283 -8.97069 -8.19258 -6.08981 0.74237 0.86484 1.52858 1.56350 1.81781 1.84487 2.39594 2.61231 2.74462 2.82736 3.52548 3.96880 4.12297 4.33534 4.36714 4.41151 4.45107 4.48573 4.60788 4.66607 4.72303 4.89865 4.99005 5.03777 5.13700 5.19783 5.29993 5.42620 5.47917 5.59740 5.71191 5.80248 5.86801 6.15152 6.18161 6.52696 6.71565 6.94598 6.99020 7.14090 8.16369 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.005475 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.876773 B = 5112.724657 C = 6165.272662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.277 4.277 4 C 0.097 3.903 5 N -0.667 5.667 6 C 0.097 3.903 7 C -0.168 4.168 8 C -0.175 4.175 9 C 0.021 3.979 10 C -0.547 4.547 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.831 5.831 14 Si 1.115 2.885 15 H -0.271 1.271 16 H -0.265 1.265 17 H -0.263 1.263 18 C 0.036 3.964 19 O -0.337 6.337 20 C 0.025 3.975 21 C -0.220 4.220 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.405 0.595 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.280 0.720 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 -1.522 -10.115 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.304 4.304 4 C -0.021 4.021 5 N -0.286 5.286 6 C -0.001 4.001 7 C -0.190 4.190 8 C -0.196 4.196 9 C 0.018 3.982 10 C -0.577 4.577 11 H 0.080 0.920 12 C -0.212 4.212 13 N -0.456 5.456 14 Si 0.933 3.067 15 H -0.195 1.195 16 H -0.190 1.190 17 H -0.188 1.188 18 C -0.009 4.009 19 O -0.251 6.251 20 C -0.070 4.070 21 C -0.242 4.242 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.146 0.854 29 H 0.240 0.760 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.525 -2.066 -8.445 9.801 hybrid contribution -1.015 1.007 -1.818 2.312 sum -5.540 -1.059 -10.262 11.710 Atomic orbital electron populations 1.21707 0.95049 1.01787 1.01568 1.20227 0.96077 0.92587 1.01786 1.22344 1.06188 0.99488 1.02408 1.21139 0.96105 0.85755 0.99102 1.41653 1.47084 1.10800 1.29055 1.17115 0.97323 0.93053 0.92607 1.20212 1.02892 0.98967 0.96882 1.20459 1.03402 0.94514 1.01179 1.17405 0.95684 0.91008 0.94110 1.20306 1.19645 1.18075 0.99681 0.91985 1.28264 1.04744 0.90421 0.97775 1.70637 1.01585 1.34389 1.38961 0.83034 0.70760 0.78385 0.74569 1.19513 1.18996 1.18778 1.19038 0.98831 0.83959 0.99078 1.85959 1.68242 1.19795 1.51142 1.23128 0.99845 0.94179 0.89843 1.20420 1.05401 0.96045 1.02326 0.91770 0.93654 0.92508 0.91148 0.92421 0.87469 0.85414 0.75962 0.86495 0.88387 0.90856 0.86913 0.92685 0.92956 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.07 -1.44 6.38 29.85 0.19 -1.25 16 3 C -0.28 -6.92 9.32 24.72 0.23 -6.69 16 4 C 0.10 2.91 9.67 82.62 0.80 3.71 16 5 N -0.67 -21.84 5.50 -187.26 -1.03 -22.87 16 6 C 0.10 3.99 6.64 38.64 0.26 4.25 16 7 C -0.17 -7.62 9.23 22.16 0.20 -7.41 16 8 C -0.18 -9.17 7.88 22.44 0.18 -8.99 16 9 C 0.02 1.18 5.31 -21.17 -0.11 1.07 16 10 C -0.55 -31.26 8.63 23.32 0.20 -31.06 16 11 H 0.06 3.59 7.71 -2.91 -0.02 3.57 16 12 C 0.00 0.08 4.93 85.21 0.42 0.50 16 13 N -0.83 -46.59 12.32 21.81 0.27 -46.32 16 14 Si 1.11 45.62 30.00 68.60 2.06 47.68 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 18 C 0.04 1.81 6.71 23.01 0.15 1.96 16 19 O -0.34 -15.59 9.79 -90.00 -0.88 -16.47 16 20 C 0.02 0.78 9.81 113.37 1.11 1.90 16 21 C -0.22 -9.30 8.86 22.46 0.20 -9.10 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.22 7.81 -2.38 -0.02 1.20 16 27 H 0.11 2.50 8.04 -2.91 -0.02 2.48 16 28 H 0.13 3.92 5.71 -2.91 -0.02 3.90 16 29 H 0.40 11.25 8.65 -92.71 -0.80 10.45 16 30 H 0.12 4.70 5.91 -2.91 -0.02 4.69 16 31 H 0.10 5.37 6.48 -2.91 -0.02 5.35 16 32 H 0.28 16.28 6.69 -92.71 -0.62 15.66 16 33 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 34 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 35 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 36 H 0.13 4.64 6.29 -2.91 -0.02 4.62 16 Total: -1.00 -63.46 301.52 5.39 -58.07 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.43 Total: 32.95 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 4.54 Total: -53.03 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.76 Total: -69.19 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.88 Total: -16.47 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.06 Total: 47.68 kcal Total: -63.46 5.39 -58.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170767455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.476 kcal (2) G-P(sol) polarization free energy of solvation -63.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds