Wall clock time and date at job start Sun Mar 29 2020 23:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48536 * 110.99713 * 2 1 4 4 C 1.54932 * 103.22586 * 200.27987 * 3 2 1 5 5 C 1.54594 * 102.92523 * 37.41434 * 4 3 2 6 6 H 1.09001 * 110.39459 * 97.00123 * 5 4 3 7 7 O 1.42896 * 110.31290 * 219.13103 * 5 4 3 8 8 C 1.35680 * 117.00055 * 203.12998 * 7 5 4 9 9 C 1.39316 * 119.81420 * 354.35482 * 8 7 5 10 10 C 1.36443 * 120.18074 * 180.02562 * 9 8 7 11 11 C 1.40831 * 119.81268 * 0.02562 * 10 9 8 12 12 C 1.41211 * 120.17757 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00168 * 27.34476 * 12 11 10 14 14 C 1.39899 * 119.99749 * 207.62135 * 12 11 10 15 15 N 1.30878 * 119.99921 * 15.07749 * 14 12 11 16 16 Si 1.86801 * 119.99789 * 195.07583 * 14 12 11 17 17 H 1.48491 * 109.47288 * 60.00175 * 16 14 12 18 18 H 1.48501 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47116 * 299.99911 * 16 14 12 20 20 C 1.40830 * 119.63999 * 0.27654 * 11 10 9 21 21 C 1.36437 * 119.81621 * 359.41928 * 20 11 10 22 22 C 1.47904 * 110.99848 * 242.60475 * 2 1 3 23 23 H 1.08999 * 109.46808 * 177.39164 * 1 2 3 24 24 H 1.08992 * 109.46949 * 297.39460 * 1 2 3 25 25 H 1.08996 * 109.47011 * 57.39949 * 1 2 3 26 26 H 1.08996 * 110.66747 * 318.71856 * 3 2 1 27 27 H 1.09004 * 110.66610 * 81.67927 * 3 2 1 28 28 H 1.09004 * 110.72458 * 279.06147 * 4 3 2 29 29 H 1.08996 * 110.72740 * 155.77340 * 4 3 2 30 30 H 1.07991 * 119.90764 * 0.02562 * 9 8 7 31 31 H 1.07999 * 120.08977 * 180.02562 * 10 9 8 32 32 H 0.96997 * 120.00148 * 179.97438 * 15 14 12 33 33 H 1.08007 * 120.09354 * 179.70419 * 20 11 10 34 34 H 1.07995 * 119.91433 * 180.31621 * 21 20 11 35 35 H 1.08996 * 109.91790 * 26.49590 * 22 2 1 36 36 H 1.08995 * 109.91727 * 265.19091 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2983 0.1054 -1.5931 6 1 3.2143 0.5472 -2.5860 7 8 4.4110 -0.7897 -1.5419 8 6 4.6871 -1.4942 -2.6681 9 6 3.8298 -1.4135 -3.7633 10 6 4.1001 -2.1191 -4.8994 11 6 5.2491 -2.9310 -4.9627 12 6 5.5365 -3.6641 -6.1349 13 1 5.1869 -3.3093 -7.0931 14 6 6.2691 -4.8532 -6.0541 15 7 6.4352 -5.4422 -4.8973 16 14 7.0104 -5.6000 -7.5976 17 1 7.9594 -4.6347 -8.2080 18 1 7.7322 -6.8492 -7.2455 19 1 5.9284 -5.9104 -8.5661 20 6 6.1070 -3.0118 -3.8488 21 6 5.8258 -2.2950 -2.7225 22 6 1.9991 -0.6353 -1.2260 23 1 -0.3633 -1.0266 -0.0468 24 1 -0.3633 0.4728 0.9124 25 1 -0.3633 0.5537 -0.8657 26 1 1.4237 2.0205 -0.6728 27 1 2.0014 1.7988 1.0092 28 1 4.1115 0.8836 0.2787 29 1 3.8122 2.1352 -0.9716 30 1 2.9490 -0.7908 -3.7128 31 1 3.4347 -2.0551 -5.7476 32 1 6.9428 -6.2669 -4.8413 33 1 6.9876 -3.6360 -3.8877 34 1 6.4853 -2.3519 -1.8692 35 1 1.2759 -0.5402 -2.0359 36 1 2.2123 -1.6873 -1.0365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:18 Heat of formation + Delta-G solvation = -12.064243 kcal Electronic energy + Delta-G solvation = -17518.920292 eV Core-core repulsion = 14774.998616 eV Total energy + Delta-G solvation = -2743.921675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.59198 -37.85316 -36.07236 -33.30632 -31.54644 -29.79489 -28.97192 -28.34581 -25.61235 -24.67739 -21.85906 -21.28630 -20.58081 -19.89347 -17.39971 -17.18247 -15.96222 -15.59771 -15.17005 -14.40944 -14.07679 -13.96276 -13.78967 -13.13039 -12.95931 -12.54523 -12.19879 -12.12797 -11.86700 -11.61221 -11.53218 -11.46628 -11.27345 -11.09449 -10.85105 -10.59691 -10.44151 -9.89622 -9.81161 -9.30191 -9.01861 -8.47313 -7.63552 -6.98230 -6.68492 -4.25177 2.80166 2.95539 3.09302 3.11887 3.22424 3.96158 3.97590 4.10532 4.61982 4.70407 4.76047 5.14828 5.25390 5.31147 5.37332 5.58079 5.60588 5.67469 5.73983 5.80250 5.88485 6.07606 6.10686 6.22766 6.25541 6.72608 6.84044 6.96068 6.99446 7.13023 7.21173 7.48331 7.57415 7.80094 8.01830 8.21813 8.47769 8.67295 8.91862 9.00135 10.26704 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.052536 B = 0.004460 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.838970 B = 6275.909220 C = 6430.114518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.519 5.519 3 C 0.035 3.965 4 C -0.119 4.119 5 C 0.083 3.917 6 H 0.072 0.928 7 O -0.314 6.314 8 C -0.006 4.006 9 C -0.169 4.169 10 C -0.195 4.195 11 C 0.089 3.911 12 C -0.467 4.467 13 H 0.075 0.925 14 C 0.075 3.925 15 N -0.803 5.803 16 Si 0.908 3.092 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.129 4.129 21 C -0.121 4.121 22 C 0.015 3.985 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.280 0.720 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 8.916 5.761 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.244 5.244 3 C -0.093 4.093 4 C -0.157 4.157 5 C 0.025 3.975 6 H 0.090 0.910 7 O -0.229 6.229 8 C -0.049 4.049 9 C -0.187 4.187 10 C -0.215 4.215 11 C 0.086 3.914 12 C -0.497 4.497 13 H 0.093 0.907 14 C -0.142 4.142 15 N -0.430 5.430 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.113 4.113 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.054 8.388 6.502 12.218 hybrid contribution -0.311 -0.038 -1.605 1.635 sum -6.365 8.350 4.897 11.585 Atomic orbital electron populations 1.22524 0.88056 1.02145 1.00591 1.64736 1.07884 1.14599 1.37186 1.23234 0.94782 0.90167 1.01105 1.22563 0.96810 0.97435 0.98885 1.22913 0.85945 0.89781 0.98844 0.90972 1.85951 1.47409 1.54358 1.35191 1.18633 0.98698 1.01182 0.86410 1.20413 0.99408 1.03840 0.95078 1.20593 0.98834 1.04871 0.97197 1.17585 0.89674 0.90856 0.93254 1.19414 1.30503 1.05333 0.94440 0.90678 1.25851 0.94364 0.96627 0.97311 1.69809 1.31678 1.15693 1.25786 0.86373 0.79838 0.78451 0.82038 1.18940 1.20403 1.19166 1.20963 1.00562 1.00217 0.93098 1.19854 0.95875 0.99449 0.98822 1.23512 0.96029 1.01184 0.90598 0.91238 0.91363 0.95514 0.93750 0.89743 0.89340 0.90440 0.88914 0.88795 0.90920 0.85776 0.88437 0.93402 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.73 16 2 N -0.52 -7.07 5.55 -238.71 -1.33 -8.39 16 3 C 0.03 0.40 6.56 -1.90 -0.01 0.39 16 4 C -0.12 -1.56 6.80 -24.87 -0.17 -1.73 16 5 C 0.08 1.37 2.85 -25.37 -0.07 1.30 16 6 H 0.07 1.18 6.33 -51.93 -0.33 0.85 16 7 O -0.31 -6.50 9.72 -18.74 -0.18 -6.68 16 8 C -0.01 -0.14 6.67 -38.78 -0.26 -0.40 16 9 C -0.17 -3.81 8.73 -39.83 -0.35 -4.16 16 10 C -0.20 -4.81 9.74 -39.25 -0.38 -5.20 16 11 C 0.09 2.38 5.55 -106.81 -0.59 1.78 16 12 C -0.47 -12.46 9.04 -37.83 -0.34 -12.80 16 13 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 14 C 0.07 1.89 5.17 -17.34 -0.09 1.80 16 15 N -0.80 -21.00 10.98 55.55 0.61 -20.39 16 16 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 17 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C -0.13 -3.39 8.62 -39.25 -0.34 -3.72 16 21 C -0.12 -2.95 9.92 -39.83 -0.40 -3.35 16 22 C 0.01 0.23 5.89 -2.75 -0.02 0.21 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.27 8.00 -51.93 -0.42 -0.15 16 26 H 0.04 0.46 7.96 -51.93 -0.41 0.05 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.83 5.75 -52.49 -0.30 1.53 16 31 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 33 H 0.12 3.33 6.27 -52.48 -0.33 3.00 16 34 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.05 0.70 7.72 -51.93 -0.40 0.30 16 36 H 0.09 1.66 7.96 -51.93 -0.41 1.24 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -28.24 295.04 -9.04 -37.28 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.11 Total: 5.07 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.45 Total: -25.14 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: -0.72 Total: -28.79 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.18 Total: -6.68 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.24 -9.04 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.217 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds