Wall clock time and date at job start Sun Mar 29 2020 22:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47248 * 2 1 4 4 C 1.50698 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.32733 * 119.99445 * 124.99947 * 4 3 2 6 6 C 1.47642 * 120.00116 * 180.02562 * 5 4 3 7 7 C 1.40270 * 119.53855 * 180.02562 * 6 5 4 8 8 C 1.38269 * 119.55920 * 179.70088 * 7 6 5 9 9 C 1.39148 * 118.65608 * 0.27539 * 8 7 6 10 10 O 1.35511 * 120.46943 * 179.97438 * 9 8 7 11 11 C 1.42902 * 116.99810 * 0.02562 * 10 9 8 12 12 C 1.41431 * 119.06205 * 0.02562 * 9 8 7 13 13 C 1.40988 * 119.82066 * 180.02562 * 12 9 8 14 14 H 1.08004 * 120.00472 * 0.02562 * 13 12 9 15 15 C 1.40020 * 120.00157 * 180.02562 * 13 12 9 16 16 N 1.30777 * 119.99770 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00285 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47395 * 89.99794 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99798 * 17 15 13 20 20 H 1.48509 * 109.47169 * 329.99936 * 17 15 13 21 21 N 1.32341 * 119.53453 * 0.27592 * 6 5 4 22 22 H 1.09005 * 109.46751 * 299.99483 * 1 2 3 23 23 H 1.09002 * 109.47199 * 59.99493 * 1 2 3 24 24 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46751 * 240.00517 * 2 1 3 26 26 H 1.09002 * 109.47199 * 120.00506 * 2 1 3 27 27 H 1.09005 * 109.46822 * 60.00560 * 3 2 1 28 28 H 1.08992 * 109.47456 * 300.00246 * 3 2 1 29 29 H 1.07999 * 120.00476 * 305.00943 * 4 3 2 30 30 H 1.07999 * 120.00609 * 0.02562 * 5 4 3 31 31 H 1.08002 * 120.22452 * 359.97438 * 7 6 5 32 32 H 1.07997 * 120.67692 * 180.30453 * 8 7 6 33 33 H 1.09001 * 109.46818 * 180.02562 * 11 10 9 34 34 H 1.08995 * 109.47183 * 300.00016 * 11 10 9 35 35 H 1.08996 * 109.47241 * 60.00255 * 11 10 9 36 36 H 0.96999 * 120.00157 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2110 2.1016 -0.9409 6 6 5.6874 2.1012 -0.9407 7 6 6.3792 2.8015 -1.9400 8 6 7.7619 2.8066 -1.9366 9 6 8.4294 2.1059 -0.9367 10 8 9.7838 2.0857 -0.8987 11 6 10.4723 2.8093 -1.9207 12 6 7.6742 1.4142 0.0387 13 6 8.3340 0.6995 1.0594 14 1 9.4133 0.6816 1.0951 15 6 7.5901 0.0129 2.0267 16 7 6.2832 0.0350 1.9837 17 14 8.4643 -0.9333 3.3793 18 1 8.6877 -0.0394 4.5439 19 1 7.6285 -2.0883 3.7950 20 1 9.7716 -1.4246 2.8744 21 7 6.3395 1.4360 -0.0007 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9562 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 4.0868 0.9059 0.7670 30 1 3.6713 2.6383 -1.7071 31 1 5.8356 3.3369 -2.7043 32 1 8.3128 3.3438 -2.6944 33 1 11.5479 2.7106 -1.7740 34 1 10.2007 2.4069 -2.8966 35 1 10.1936 3.8618 -1.8713 36 1 5.7678 -0.4410 2.6536 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242253251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:47 Heat of formation + Delta-G solvation = -23.660432 kcal Electronic energy + Delta-G solvation = -17404.472489 eV Core-core repulsion = 14660.047965 eV Total energy + Delta-G solvation = -2744.424524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66745 -38.58869 -36.82879 -35.54724 -33.50928 -32.26630 -30.78871 -28.28381 -27.96143 -26.41355 -23.51954 -23.05477 -21.87152 -20.19778 -19.35944 -18.40981 -17.38214 -16.71284 -16.33540 -16.31782 -15.62512 -14.97179 -14.78086 -14.50294 -14.19379 -14.09239 -13.92490 -13.33062 -13.13241 -12.93951 -12.87475 -12.51296 -12.39180 -12.14259 -12.11469 -11.93882 -11.73650 -11.52282 -11.42513 -11.29090 -10.20217 -9.99400 -9.59314 -8.60162 -8.28206 -6.34721 0.48999 1.02074 1.40668 1.47929 1.54556 1.92738 2.25281 2.85087 2.94036 3.92864 3.95100 4.15197 4.21176 4.28235 4.32808 4.36628 4.46171 4.56150 4.62674 4.71215 4.75413 4.84466 4.93777 4.98020 5.06173 5.17332 5.26944 5.32630 5.34332 5.51013 5.59338 5.68443 5.98200 6.01544 6.29786 6.36480 6.44707 6.82578 7.16830 8.16040 8.47304 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.007703 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.077286 B = 3634.147628 C = 5327.604164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.081 4.081 4 C -0.127 4.127 5 C -0.134 4.134 6 C 0.117 3.883 7 C -0.274 4.274 8 C -0.147 4.147 9 C -0.053 4.053 10 O -0.335 6.335 11 C 0.025 3.975 12 C 0.214 3.786 13 C -0.454 4.454 14 H 0.082 0.918 15 C 0.025 3.975 16 N -0.748 5.748 17 Si 0.984 3.016 18 H -0.263 1.263 19 H -0.265 1.265 20 H -0.261 1.261 21 N -0.481 5.481 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.005 1.564 -3.341 6.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.118 4.118 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.023 4.023 7 C -0.297 4.297 8 C -0.171 4.171 9 C -0.102 4.102 10 O -0.249 6.249 11 C -0.070 4.070 12 C 0.086 3.914 13 C -0.486 4.486 14 H 0.100 0.900 15 C -0.196 4.196 16 N -0.370 5.370 17 Si 0.804 3.196 18 H -0.188 1.188 19 H -0.189 1.189 20 H -0.185 1.185 21 N -0.196 5.196 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.506 0.956 -2.496 6.120 hybrid contribution 1.107 0.340 -0.448 1.241 sum -4.399 1.296 -2.944 5.450 Atomic orbital electron populations 1.21742 0.93910 1.02147 1.02374 1.21438 0.96934 0.95864 1.01456 1.20729 0.90470 0.97745 1.02860 1.23824 0.96496 0.96527 0.97831 1.21608 0.89907 1.02934 1.00755 1.20771 0.95296 0.94279 0.91957 1.21476 0.93754 1.10452 1.04038 1.21255 0.95430 1.01697 0.98747 1.20414 0.82876 1.06170 1.00703 1.85869 1.16156 1.71052 1.51775 1.23107 0.97761 0.95660 0.90468 1.18628 0.88055 0.92618 0.92146 1.19690 0.94594 1.26257 1.08040 0.90008 1.26881 0.95520 0.96678 1.00557 1.70190 1.07221 1.29702 1.29898 0.85186 0.79038 0.77958 0.77371 1.18816 1.18912 1.18459 1.68948 1.06685 1.20831 1.23156 0.92141 0.91928 0.92163 0.92967 0.93026 0.90429 0.90389 0.87361 0.84793 0.85410 0.84553 0.86758 0.93101 0.93078 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.12 -3.19 5.92 30.59 0.18 -3.01 16 3 C -0.08 -2.35 5.66 29.85 0.17 -2.18 16 4 C -0.13 -5.07 9.07 24.51 0.22 -4.84 16 5 C -0.13 -5.56 9.49 23.58 0.22 -5.34 16 6 C 0.12 5.92 6.71 42.05 0.28 6.20 16 7 C -0.27 -12.56 9.82 22.77 0.22 -12.34 16 8 C -0.15 -6.73 9.11 22.50 0.20 -6.52 16 9 C -0.05 -2.79 6.74 23.28 0.16 -2.63 16 10 O -0.33 -15.78 9.60 -88.14 -0.85 -16.63 16 11 C 0.03 0.82 9.83 113.37 1.11 1.93 16 12 C 0.21 12.54 6.56 40.34 0.26 12.80 16 13 C -0.45 -26.14 8.94 23.38 0.21 -25.93 16 14 H 0.08 4.62 7.31 -2.91 -0.02 4.60 16 15 C 0.03 1.33 5.50 85.28 0.47 1.80 16 16 N -0.75 -40.58 11.06 21.84 0.24 -40.33 16 17 Si 0.98 39.85 29.56 68.60 2.03 41.88 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 21 N -0.48 -27.59 6.78 -178.17 -1.21 -28.79 16 22 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.08 1.96 7.82 -2.39 -0.02 1.94 16 29 H 0.11 5.24 6.97 -2.91 -0.02 5.22 16 30 H 0.13 4.55 7.87 -2.91 -0.02 4.52 16 31 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.14 5.11 6.42 -2.91 -0.02 5.09 16 33 H 0.11 2.93 8.14 -2.39 -0.02 2.92 16 34 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 35 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 36 H 0.28 13.60 8.29 -92.71 -0.77 12.83 16 Total: -1.00 -67.18 306.70 5.70 -61.48 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 1.05 Total: 24.63 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 4.43 Total: -42.23 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.97 Total: -69.13 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.85 Total: -16.63 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -67.18 5.70 -61.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242253251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.816 kcal (2) G-P(sol) polarization free energy of solvation -67.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds