Wall clock time and date at job start Sun Mar 29 2020 23:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.46497 * 119.99525 * 179.72583 * 4 2 1 6 6 C 1.50706 * 109.47174 * 179.97438 * 5 4 2 7 7 C 1.38253 * 120.00090 * 269.72931 * 6 5 4 8 8 C 1.38221 * 119.99954 * 179.80503 * 7 6 5 9 9 C 1.38254 * 119.99485 * 0.42034 * 8 7 6 10 10 C 1.38218 * 120.00384 * 359.80999 * 9 8 7 11 11 C 1.50701 * 119.99992 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47129 * 270.02409 * 11 10 9 13 13 C 1.50701 * 109.47129 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99738 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00067 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99954 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00125 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46989 * 60.00554 * 17 15 13 19 19 H 1.48499 * 109.47059 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47080 * 300.00469 * 17 15 13 21 21 C 1.38210 * 119.99558 * 89.99634 * 6 5 4 22 22 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.47352 * 119.99681 * 1 2 3 24 24 H 1.08998 * 109.47585 * 239.99969 * 1 2 3 25 25 H 0.97000 * 119.99894 * 359.71837 * 4 2 1 26 26 H 1.08995 * 109.47421 * 299.99467 * 5 4 2 27 27 H 1.09001 * 109.47621 * 60.00103 * 5 4 2 28 28 H 1.07996 * 120.00280 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.00261 * 180.20849 * 8 7 6 30 30 H 1.08003 * 119.99652 * 179.78408 * 9 8 7 31 31 H 1.08997 * 109.47076 * 30.02475 * 11 10 9 32 32 H 1.08994 * 109.47027 * 150.02238 * 11 10 9 33 33 H 1.09006 * 109.47367 * 300.00111 * 12 11 10 34 34 H 1.08994 * 109.47306 * 60.00000 * 12 11 10 35 35 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 36 36 H 1.08006 * 120.00369 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 3.6458 -1.1672 -0.0117 6 6 4.1482 -2.5880 -0.0167 7 6 4.3889 -3.2403 1.1783 8 6 4.8459 -4.5448 1.1737 9 6 5.0704 -5.1943 -0.0259 10 6 4.8343 -4.5405 -1.2206 11 6 5.0796 -5.2484 -2.5282 12 6 6.5227 -5.0071 -2.9758 13 6 6.7678 -5.7145 -4.2838 14 1 5.9737 -6.2792 -4.7493 15 6 8.0056 -5.6398 -4.8865 16 7 8.9725 -4.9516 -4.3198 17 14 8.3097 -6.5171 -6.5073 18 1 7.3772 -5.9922 -7.5369 19 1 9.7103 -6.2828 -6.9418 20 1 8.0836 -7.9743 -6.3315 21 6 4.3735 -3.2370 -1.2160 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3634 -0.5138 -0.8901 24 1 -0.3634 -0.5138 0.8899 25 1 1.6958 -2.0072 -0.0056 26 1 4.0054 -0.6512 -0.9019 27 1 4.0129 -0.6556 0.8780 28 1 4.2174 -2.7315 2.1153 29 1 5.0307 -5.0555 2.1072 30 1 5.4308 -6.2124 -0.0295 31 1 4.9132 -6.3179 -2.3992 32 1 4.3955 -4.8629 -3.2840 33 1 6.6891 -3.9376 -3.1048 34 1 7.2068 -5.3927 -2.2200 35 1 9.8434 -4.8993 -4.7435 36 1 4.1891 -2.7262 -2.1495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:13 Heat of formation + Delta-G solvation = -40.036856 kcal Electronic energy + Delta-G solvation = -16754.240123 eV Core-core repulsion = 14009.105464 eV Total energy + Delta-G solvation = -2745.134659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86921 -38.96054 -35.23164 -33.94074 -32.19608 -31.48320 -29.76558 -28.94427 -25.70695 -25.09274 -22.14007 -21.42667 -20.72645 -19.79015 -17.09720 -16.52045 -16.20677 -15.87391 -15.76016 -14.99433 -14.52427 -14.34285 -13.62349 -13.24570 -13.05015 -12.88994 -12.65989 -12.54611 -12.46282 -12.09796 -12.06456 -11.33081 -10.98792 -10.82358 -10.80326 -10.53165 -10.10520 -9.86657 -9.65525 -9.19947 -9.14453 -8.61535 -8.36970 -8.19554 -6.01980 -4.05653 1.47489 1.68946 2.51764 3.22042 3.31699 3.36473 3.38470 4.08533 4.44108 4.63358 4.77425 5.00358 5.04999 5.13419 5.23254 5.33458 5.37638 5.51371 5.56677 5.70399 5.77024 5.89209 6.06344 6.26720 6.29207 6.41656 6.59623 6.70013 6.75712 6.95015 7.04370 7.29629 7.39416 7.64080 7.77432 7.97071 8.09271 8.37200 9.01089 9.58617 11.08968 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.004058 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.810464 B = 6897.831750 C = 7425.943218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.507 3.493 3 O -0.551 6.551 4 N -0.725 5.725 5 C 0.163 3.837 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.056 4.056 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.100 4.100 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.403 0.597 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.262 0.738 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 3.794 11.034 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.428 6.428 4 N -0.377 5.377 5 C 0.040 3.960 6 C -0.115 4.115 7 C -0.139 4.139 8 C -0.140 4.140 9 C -0.129 4.129 10 C -0.056 4.056 11 C -0.118 4.118 12 C -0.007 4.007 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.119 4.119 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.237 0.763 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.411 4.625 11.008 18.714 hybrid contribution 0.194 -0.941 -0.879 1.302 sum -14.217 3.684 10.129 17.841 Atomic orbital electron populations 1.21917 0.91758 1.05416 1.04257 1.20836 0.90610 0.83479 0.75680 1.90730 1.70928 1.31459 1.49724 1.46189 1.07331 1.08812 1.75367 1.20182 0.79433 0.93443 1.02960 1.19714 1.02876 0.95098 0.93789 1.20876 1.01090 0.95030 0.96922 1.21068 1.00152 0.94886 0.97870 1.21174 0.99453 1.00361 0.91959 1.20403 0.94652 0.94076 0.96514 1.20860 1.01438 0.98442 0.91105 1.19069 0.88387 0.97301 0.95928 1.21207 0.96987 1.31809 1.06307 0.92644 1.25023 0.96218 0.95444 0.97673 1.69957 1.03093 1.40974 1.39242 0.86649 0.77209 0.80141 0.83953 1.20208 1.21261 1.20219 1.21005 0.99205 0.94515 0.97176 0.89060 0.89349 0.89489 0.76316 0.90576 0.90866 0.86657 0.86401 0.86028 0.92136 0.92198 0.96433 0.96433 0.92873 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.32 36.01 0.37 -0.81 16 2 C 0.51 5.77 7.94 -10.98 -0.09 5.68 16 3 O -0.55 -8.85 17.09 5.55 0.09 -8.76 16 4 N -0.72 -7.55 5.55 -61.47 -0.34 -7.89 16 5 C 0.16 2.02 5.80 -5.19 -0.03 1.99 16 6 C -0.11 -1.54 5.25 -104.62 -0.55 -2.09 16 7 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 8 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 9 C -0.11 -1.74 9.70 -39.58 -0.38 -2.12 16 10 C -0.06 -0.98 5.13 -104.62 -0.54 -1.52 16 11 C -0.08 -1.63 5.28 -27.88 -0.15 -1.77 16 12 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.10 -1.58 9.36 -39.58 -0.37 -1.95 16 22 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 23 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.40 3.30 8.46 -40.82 -0.35 2.95 16 26 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -32.82 314.61 -8.22 -41.04 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.37 Total: -0.14 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -3.06 Total: -19.33 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.40 Total: -34.05 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.82 -8.22 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.004 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds