Wall clock time and date at job start Sun Mar 29 2020 23:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.46497 * 119.99525 * 179.72583 * 4 2 1 6 6 C 1.50706 * 109.47174 * 179.97438 * 5 4 2 7 7 C 1.38253 * 120.00090 * 269.72931 * 6 5 4 8 8 C 1.38221 * 119.99954 * 179.80503 * 7 6 5 9 9 C 1.38254 * 119.99485 * 0.42034 * 8 7 6 10 10 C 1.38218 * 120.00384 * 359.80999 * 9 8 7 11 11 C 1.50701 * 119.99992 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47129 * 270.02409 * 11 10 9 13 13 C 1.50701 * 109.47129 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99738 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00067 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99954 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00125 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46989 * 60.00554 * 17 15 13 19 19 H 1.48499 * 109.47059 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47080 * 300.00469 * 17 15 13 21 21 C 1.38210 * 119.99558 * 89.99634 * 6 5 4 22 22 H 1.09004 * 109.46983 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.47352 * 119.99681 * 1 2 3 24 24 H 1.08998 * 109.47585 * 239.99969 * 1 2 3 25 25 H 0.97000 * 119.99894 * 359.71837 * 4 2 1 26 26 H 1.08995 * 109.47421 * 299.99467 * 5 4 2 27 27 H 1.09001 * 109.47621 * 60.00103 * 5 4 2 28 28 H 1.07996 * 120.00280 * 359.97438 * 7 6 5 29 29 H 1.07998 * 120.00261 * 180.20849 * 8 7 6 30 30 H 1.08003 * 119.99652 * 179.78408 * 9 8 7 31 31 H 1.08997 * 109.47076 * 30.02475 * 11 10 9 32 32 H 1.08994 * 109.47027 * 150.02238 * 11 10 9 33 33 H 1.09006 * 109.47367 * 300.00111 * 12 11 10 34 34 H 1.08994 * 109.47306 * 60.00000 * 12 11 10 35 35 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 36 36 H 1.08006 * 120.00369 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 3.6458 -1.1672 -0.0117 6 6 4.1482 -2.5880 -0.0167 7 6 4.3889 -3.2403 1.1783 8 6 4.8459 -4.5448 1.1737 9 6 5.0704 -5.1943 -0.0259 10 6 4.8343 -4.5405 -1.2206 11 6 5.0796 -5.2484 -2.5282 12 6 6.5227 -5.0071 -2.9758 13 6 6.7678 -5.7145 -4.2838 14 1 5.9737 -6.2792 -4.7493 15 6 8.0056 -5.6398 -4.8865 16 7 8.9725 -4.9516 -4.3198 17 14 8.3097 -6.5171 -6.5073 18 1 7.3772 -5.9922 -7.5369 19 1 9.7103 -6.2828 -6.9418 20 1 8.0836 -7.9743 -6.3315 21 6 4.3735 -3.2370 -1.2160 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3634 -0.5138 -0.8901 24 1 -0.3634 -0.5138 0.8899 25 1 1.6958 -2.0072 -0.0056 26 1 4.0054 -0.6512 -0.9019 27 1 4.0129 -0.6556 0.8780 28 1 4.2174 -2.7315 2.1153 29 1 5.0307 -5.0555 2.1072 30 1 5.4308 -6.2124 -0.0295 31 1 4.9132 -6.3179 -2.3992 32 1 4.3955 -4.8629 -3.2840 33 1 6.6891 -3.9376 -3.1048 34 1 7.2068 -5.3927 -2.2200 35 1 9.8434 -4.8993 -4.7435 36 1 4.1891 -2.7262 -2.1495 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:13 Heat of formation + Delta-G solvation = -60.605182 kcal Electronic energy + Delta-G solvation = -16755.132033 eV Core-core repulsion = 14009.105464 eV Total energy + Delta-G solvation = -2746.026568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89545 -40.07073 -36.48843 -35.58081 -33.93457 -32.54489 -30.80103 -30.34173 -26.98784 -26.67189 -23.74522 -22.75712 -21.63781 -21.18767 -18.57641 -17.94252 -17.41837 -16.91099 -16.80396 -16.53718 -16.07728 -15.52881 -14.69887 -14.56691 -14.52761 -14.12146 -13.89246 -13.77694 -13.62969 -13.30437 -13.04633 -12.91613 -12.80824 -12.54969 -12.10750 -12.04270 -11.65063 -11.57224 -11.19484 -11.04632 -10.56868 -10.15886 -9.74693 -9.48941 -8.20847 -6.33432 0.33373 0.51413 1.39662 1.42818 1.50828 1.64332 2.32698 2.40401 2.94666 3.11951 3.64546 3.89523 3.97892 4.07971 4.27257 4.35527 4.46507 4.53651 4.62202 4.69146 4.69555 4.80995 4.84940 5.00621 5.10917 5.13814 5.25882 5.37790 5.47426 5.54055 5.58768 5.61760 5.82571 5.89261 6.11122 6.21574 6.57037 6.83657 7.24620 7.36310 8.90474 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.004058 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.810464 B = 6897.831750 C = 7425.943218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.714 5.714 5 C 0.167 3.833 6 C -0.106 4.106 7 C -0.110 4.110 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.084 4.084 11 C -0.067 4.067 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.064 0.936 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.264 1.264 21 C -0.112 4.112 22 H 0.089 0.911 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.416 0.584 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.061 0.939 33 H -0.014 1.014 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.716 3.022 11.912 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.291 3.709 3 O -0.486 6.486 4 N -0.367 5.367 5 C 0.043 3.957 6 C -0.107 4.107 7 C -0.128 4.128 8 C -0.133 4.133 9 C -0.142 4.142 10 C -0.084 4.084 11 C -0.104 4.104 12 C 0.000 4.000 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.131 4.131 22 H 0.108 0.892 23 H 0.127 0.873 24 H 0.133 0.867 25 H 0.253 0.747 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.141 0.859 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.004 0.996 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.121 3.813 11.890 20.392 hybrid contribution 0.703 -0.667 -1.071 1.444 sum -15.418 3.147 10.819 19.096 Atomic orbital electron populations 1.21927 0.87780 1.06113 1.06502 1.21701 0.92459 0.82581 0.74154 1.90709 1.72337 1.33295 1.52290 1.46101 1.06461 1.09492 1.74635 1.20016 0.80832 0.92509 1.02297 1.19752 1.02267 0.95269 0.93379 1.21245 0.99125 0.94768 0.97652 1.21400 0.98713 0.95061 0.98105 1.21317 0.99746 1.00760 0.92334 1.20203 0.97449 0.94929 0.95797 1.20564 0.97610 0.99247 0.92968 1.18908 0.91602 0.94778 0.94737 1.21695 0.97471 1.31949 1.07307 0.91824 1.26010 0.95939 0.96165 1.01733 1.70104 1.03621 1.42513 1.41169 0.85484 0.77191 0.79257 0.79030 1.19115 1.20946 1.18921 1.21000 0.99955 0.94166 0.97988 0.89219 0.87327 0.86745 0.74727 0.92445 0.90478 0.83533 0.83190 0.85870 0.91608 0.92049 0.99551 0.99159 0.92765 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.32 71.24 0.74 -1.05 16 2 C 0.50 10.77 7.94 87.66 0.70 11.46 16 3 O -0.60 -19.44 17.09 -3.04 -0.05 -19.49 16 4 N -0.71 -13.72 5.55 -466.79 -2.59 -16.31 16 5 C 0.17 4.02 5.80 85.64 0.50 4.51 16 6 C -0.11 -2.73 5.25 -19.87 -0.10 -2.83 16 7 C -0.11 -2.46 9.70 22.27 0.22 -2.24 16 8 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 9 C -0.12 -3.75 9.70 22.27 0.22 -3.54 16 10 C -0.08 -2.94 5.13 -19.86 -0.10 -3.04 16 11 C -0.07 -2.75 5.28 29.85 0.16 -2.59 16 12 C 0.04 1.97 4.96 29.85 0.15 2.12 16 13 C -0.55 -31.26 9.11 25.60 0.23 -31.02 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 17 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 C -0.11 -3.57 9.36 22.27 0.21 -3.36 16 22 H 0.09 1.06 8.12 -2.38 -0.02 1.04 16 23 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.42 5.80 8.46 -92.71 -0.78 5.02 16 26 H 0.06 1.61 8.09 -2.39 -0.02 1.59 16 27 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 32 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 33 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -73.38 314.61 3.53 -69.85 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.27 Total: 10.69 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 3.59 Total: -33.68 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.30 Total: -73.72 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -73.38 3.53 -69.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.248 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds