Wall clock time and date at job start Sun Mar 29 2020 22:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00063 * 2 1 4 4 C 1.52995 * 109.47004 * 239.99633 * 3 2 1 5 5 O 1.42901 * 109.47053 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.46884 * 119.99633 * 3 2 1 7 7 N 1.46501 * 109.46854 * 179.97438 * 6 3 2 8 8 C 1.38728 * 119.99732 * 179.97438 * 7 6 3 9 9 C 1.38748 * 120.29693 * 0.30255 * 8 7 6 10 10 C 1.38168 * 120.02610 * 180.27606 * 9 8 7 11 11 C 1.38903 * 120.62665 * 359.72127 * 10 9 8 12 12 C 1.36448 * 120.59533 * 359.97438 * 11 10 9 13 13 C 1.40728 * 119.95337 * 0.02562 * 12 11 10 14 14 C 1.41041 * 120.30701 * 180.02562 * 13 12 11 15 15 H 1.08010 * 120.00110 * 209.22194 * 14 13 12 16 16 C 1.39932 * 120.00267 * 29.21740 * 14 13 12 17 17 N 1.30874 * 119.99877 * 197.28819 * 16 14 13 18 18 Si 1.86802 * 119.99754 * 17.29274 * 16 14 13 19 19 H 1.48498 * 109.46760 * 269.99824 * 18 16 14 20 20 H 1.48502 * 109.47211 * 29.99486 * 18 16 14 21 21 H 1.48494 * 109.47096 * 150.00142 * 18 16 14 22 22 H 1.07995 * 120.00590 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99726 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.47436 * 299.99917 * 4 3 2 26 26 H 1.08995 * 109.47124 * 60.00011 * 4 3 2 27 27 H 1.09002 * 109.47347 * 180.02562 * 4 3 2 28 28 H 0.96696 * 113.99892 * 60.00242 * 5 3 2 29 29 H 1.08994 * 109.46846 * 59.99997 * 6 3 2 30 30 H 1.09004 * 109.47285 * 299.99888 * 6 3 2 31 31 H 0.96999 * 119.99749 * 0.02562 * 7 6 3 32 32 H 1.07996 * 119.98582 * 359.97438 * 9 8 7 33 33 H 1.07998 * 119.68815 * 179.73421 * 10 9 8 34 34 H 1.07991 * 119.70350 * 179.97438 * 11 10 9 35 35 H 1.08004 * 120.02618 * 180.02562 * 12 11 10 36 36 H 0.96997 * 120.00366 * 355.41194 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 1.2493 7 7 3.6761 2.6546 1.2490 8 6 4.5427 2.9551 2.2898 9 6 4.7247 2.0561 3.3308 10 6 5.5849 2.3636 4.3674 11 6 6.2789 3.5668 4.3778 12 6 6.1239 4.4667 3.3640 13 6 5.2540 4.1789 2.2958 14 6 5.0885 5.1035 1.2437 15 1 4.1528 5.1481 0.7061 16 6 6.1366 5.9631 0.8963 17 7 5.8971 7.0291 0.1758 18 14 7.8775 5.5891 1.4610 19 1 8.1189 6.2301 2.7786 20 1 8.0525 4.1197 1.5859 21 1 8.8450 6.1203 0.4675 22 1 -0.5401 -0.9352 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 3.6516 0.5576 -1.2491 26 1 2.3166 1.3283 -2.1391 27 1 3.4886 2.3298 -1.2490 28 1 0.5434 2.4034 0.7642 29 1 3.6513 0.5576 1.2493 30 1 2.3164 1.3284 2.1393 31 1 3.5548 3.2846 0.5215 32 1 4.1901 1.1178 3.3334 33 1 5.7192 1.6617 5.1771 34 1 6.9471 3.7921 5.1957 35 1 6.6683 5.3994 3.3812 36 1 5.0063 7.1884 -0.1734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252564718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:37 Heat of formation + Delta-G solvation = -13.500421 kcal Electronic energy + Delta-G solvation = -17881.125352 eV Core-core repulsion = 15137.141399 eV Total energy + Delta-G solvation = -2743.983953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08409 -37.82078 -34.29503 -33.55222 -32.93539 -30.61746 -30.11195 -28.03935 -25.83404 -24.45057 -22.36070 -20.78930 -20.00608 -19.56220 -18.01358 -16.94396 -16.60568 -15.53356 -15.07112 -14.50239 -14.27481 -13.88248 -13.54976 -13.13477 -12.78605 -12.51811 -12.39084 -12.30088 -12.08582 -11.98134 -11.59888 -11.32627 -11.06203 -10.73106 -10.45458 -10.20014 -10.07842 -9.65448 -9.50891 -9.30269 -9.00960 -8.89206 -7.62926 -7.14242 -6.43661 -4.25045 2.08090 2.75825 2.90829 3.29976 3.45044 3.64539 4.10972 4.14713 4.43317 4.70420 4.85266 4.93480 5.02561 5.18233 5.52316 5.64516 5.78422 5.84773 5.93129 6.05938 6.09297 6.22152 6.24038 6.40407 6.42795 6.57524 6.74349 7.02138 7.17334 7.49462 7.54129 7.64908 7.74347 7.95475 8.05812 8.23193 8.56263 8.65668 8.90006 8.97834 10.18953 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.007078 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.202437 B = 3955.021546 C = 4738.766348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.178 4.178 3 C 0.148 3.852 4 C -0.133 4.133 5 O -0.550 6.550 6 C 0.117 3.883 7 N -0.739 5.739 8 C 0.125 3.875 9 C -0.172 4.172 10 C -0.199 4.199 11 C -0.122 4.122 12 C -0.222 4.222 13 C 0.057 3.943 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.042 3.958 17 N -0.831 5.831 18 Si 1.077 2.923 19 H -0.279 1.279 20 H -0.265 1.265 21 H -0.295 1.295 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.375 0.625 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.401 0.599 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -11.273 -0.417 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.197 4.197 3 C 0.107 3.893 4 C -0.191 4.191 5 O -0.356 6.356 6 C -0.009 4.009 7 N -0.375 5.375 8 C 0.025 3.975 9 C -0.196 4.196 10 C -0.219 4.219 11 C -0.142 4.142 12 C -0.242 4.242 13 C 0.051 3.949 14 C -0.551 4.551 15 H 0.089 0.911 16 C -0.175 4.175 17 N -0.455 5.455 18 Si 0.904 3.096 19 H -0.207 1.207 20 H -0.189 1.189 21 H -0.223 1.223 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.134 0.866 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.223 0.777 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.239 0.761 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.607 -10.639 -1.035 11.640 hybrid contribution -2.102 -0.569 0.340 2.204 sum -6.710 -11.208 -0.695 13.081 Atomic orbital electron populations 1.23829 0.96009 1.02254 1.00105 1.23534 0.96654 0.98746 1.00742 1.20432 0.88461 0.84306 0.96138 1.21666 0.98553 1.03545 0.95308 1.86591 1.50572 1.49250 1.49209 1.21602 0.94455 0.88901 0.95968 1.43912 1.48070 1.19492 1.26001 1.17903 0.96072 0.93961 0.89604 1.20107 1.04306 0.98756 0.96430 1.20132 1.03694 0.98262 0.99846 1.20165 1.00651 0.95105 0.98279 1.20610 1.07083 1.00318 0.96235 1.17430 0.93061 0.90578 0.93781 1.20239 1.01328 1.17453 1.16081 0.91060 1.27128 1.06080 0.90503 0.93784 1.70566 1.26648 1.20897 1.27375 0.83525 0.72801 0.77922 0.75330 1.20656 1.18937 1.22259 0.88299 0.87788 0.86579 0.90995 0.92081 0.90867 0.77723 0.92647 0.93439 0.76142 0.89142 0.89242 0.89269 0.87875 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 13.93 29.01 0.40 -1.41 16 2 C -0.18 -1.95 8.77 -36.03 -0.32 -2.27 16 3 C 0.15 1.99 1.02 -91.77 -0.09 1.90 16 4 C -0.13 -1.83 8.65 37.16 0.32 -1.51 16 5 O -0.55 -7.88 11.69 -35.23 -0.41 -8.30 16 6 C 0.12 1.84 4.00 -4.04 -0.02 1.82 16 7 N -0.74 -14.87 5.22 -58.20 -0.30 -15.17 16 8 C 0.12 2.91 6.68 -83.29 -0.56 2.35 16 9 C -0.17 -3.74 9.30 -39.42 -0.37 -4.10 16 10 C -0.20 -4.30 10.04 -39.36 -0.39 -4.70 16 11 C -0.12 -2.77 9.97 -39.98 -0.40 -3.16 16 12 C -0.22 -5.54 7.20 -39.29 -0.28 -5.82 16 13 C 0.06 1.46 5.14 -106.63 -0.55 0.91 16 14 C -0.52 -14.08 8.82 -37.89 -0.33 -14.41 16 15 H 0.07 1.98 6.98 -52.48 -0.37 1.61 16 16 C 0.04 1.14 5.42 -17.33 -0.09 1.05 16 17 N -0.83 -22.99 13.66 55.55 0.76 -22.23 16 18 Si 1.08 25.37 24.90 -169.99 -4.23 21.14 16 19 H -0.28 -6.30 6.44 56.52 0.36 -5.94 16 20 H -0.26 -6.24 7.02 56.52 0.40 -5.84 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 23 H 0.10 1.01 6.41 -52.48 -0.34 0.67 16 24 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.17 6.86 -51.93 -0.36 0.81 16 28 H 0.37 4.31 8.05 45.56 0.37 4.68 16 29 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 30 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 31 H 0.40 8.52 5.48 -40.82 -0.22 8.30 16 32 H 0.09 1.73 6.73 -52.49 -0.35 1.38 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.10 2.57 4.42 -52.48 -0.23 2.34 16 36 H 0.28 7.64 8.73 -40.82 -0.36 7.28 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -28.80 293.04 -6.51 -35.31 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.06 Total: 14.19 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -2.68 Total: -29.35 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.45 Total: -37.40 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.41 Total: -8.30 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.23 Total: 21.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.80 -6.51 -35.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252564718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.808 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds