Wall clock time and date at job start Sun Mar 29 2020 22:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00063 * 2 1 4 4 C 1.52995 * 109.47004 * 239.99633 * 3 2 1 5 5 O 1.42901 * 109.47053 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.46884 * 119.99633 * 3 2 1 7 7 N 1.46501 * 109.46854 * 179.97438 * 6 3 2 8 8 C 1.38728 * 119.99732 * 179.97438 * 7 6 3 9 9 C 1.38748 * 120.29693 * 0.30255 * 8 7 6 10 10 C 1.38168 * 120.02610 * 180.27606 * 9 8 7 11 11 C 1.38903 * 120.62665 * 359.72127 * 10 9 8 12 12 C 1.36448 * 120.59533 * 359.97438 * 11 10 9 13 13 C 1.40728 * 119.95337 * 0.02562 * 12 11 10 14 14 C 1.41041 * 120.30701 * 180.02562 * 13 12 11 15 15 H 1.08010 * 120.00110 * 209.22194 * 14 13 12 16 16 C 1.39932 * 120.00267 * 29.21740 * 14 13 12 17 17 N 1.30874 * 119.99877 * 197.28819 * 16 14 13 18 18 Si 1.86802 * 119.99754 * 17.29274 * 16 14 13 19 19 H 1.48498 * 109.46760 * 269.99824 * 18 16 14 20 20 H 1.48502 * 109.47211 * 29.99486 * 18 16 14 21 21 H 1.48494 * 109.47096 * 150.00142 * 18 16 14 22 22 H 1.07995 * 120.00590 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99726 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99726 * 179.97438 * 2 1 3 25 25 H 1.09005 * 109.47436 * 299.99917 * 4 3 2 26 26 H 1.08995 * 109.47124 * 60.00011 * 4 3 2 27 27 H 1.09002 * 109.47347 * 180.02562 * 4 3 2 28 28 H 0.96696 * 113.99892 * 60.00242 * 5 3 2 29 29 H 1.08994 * 109.46846 * 59.99997 * 6 3 2 30 30 H 1.09004 * 109.47285 * 299.99888 * 6 3 2 31 31 H 0.96999 * 119.99749 * 0.02562 * 7 6 3 32 32 H 1.07996 * 119.98582 * 359.97438 * 9 8 7 33 33 H 1.07998 * 119.68815 * 179.73421 * 10 9 8 34 34 H 1.07991 * 119.70350 * 179.97438 * 11 10 9 35 35 H 1.08004 * 120.02618 * 180.02562 * 12 11 10 36 36 H 0.96997 * 120.00366 * 355.41194 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 1.2493 7 7 3.6761 2.6546 1.2490 8 6 4.5427 2.9551 2.2898 9 6 4.7247 2.0561 3.3308 10 6 5.5849 2.3636 4.3674 11 6 6.2789 3.5668 4.3778 12 6 6.1239 4.4667 3.3640 13 6 5.2540 4.1789 2.2958 14 6 5.0885 5.1035 1.2437 15 1 4.1528 5.1481 0.7061 16 6 6.1366 5.9631 0.8963 17 7 5.8971 7.0291 0.1758 18 14 7.8775 5.5891 1.4610 19 1 8.1189 6.2301 2.7786 20 1 8.0525 4.1197 1.5859 21 1 8.8450 6.1203 0.4675 22 1 -0.5401 -0.9352 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 3.6516 0.5576 -1.2491 26 1 2.3166 1.3283 -2.1391 27 1 3.4886 2.3298 -1.2490 28 1 0.5434 2.4034 0.7642 29 1 3.6513 0.5576 1.2493 30 1 2.3164 1.3284 2.1393 31 1 3.5548 3.2846 0.5215 32 1 4.1901 1.1178 3.3334 33 1 5.7192 1.6617 5.1771 34 1 6.9471 3.7921 5.1957 35 1 6.6683 5.3994 3.3812 36 1 5.0063 7.1884 -0.1734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252564718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:37 Heat of formation + Delta-G solvation = -32.958854 kcal Electronic energy + Delta-G solvation = -17881.969133 eV Core-core repulsion = 15137.141399 eV Total energy + Delta-G solvation = -2744.827734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41187 -39.37509 -35.83744 -35.48225 -33.92268 -32.12241 -31.64853 -29.58330 -27.26114 -26.28734 -23.68013 -22.39992 -21.61735 -20.62863 -19.96382 -18.18081 -17.99267 -16.95617 -16.38406 -16.00194 -15.94744 -15.52164 -14.94991 -14.75846 -14.37755 -14.12368 -13.82761 -13.75829 -13.38415 -13.12165 -13.06574 -12.61454 -12.58283 -12.26059 -12.10749 -11.87991 -11.52491 -11.26730 -11.11781 -10.81497 -10.65598 -10.37018 -9.53499 -9.14777 -8.18298 -6.25311 0.90374 1.09799 1.27544 1.39646 1.57672 1.78576 2.24486 2.75701 2.83260 3.29875 3.61826 3.73843 3.84021 3.97144 4.35192 4.37480 4.51394 4.59874 4.66996 4.75186 4.78794 4.81530 4.94866 5.06778 5.14502 5.19892 5.41715 5.56218 5.61030 5.67904 5.76173 5.81442 6.13311 6.17257 6.42332 6.64013 6.67685 6.81404 7.11207 7.14958 8.14698 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.007078 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.202437 B = 3955.021546 C = 4738.766348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.189 4.189 3 C 0.152 3.848 4 C -0.135 4.135 5 O -0.569 6.569 6 C 0.115 3.885 7 N -0.742 5.742 8 C 0.123 3.877 9 C -0.180 4.180 10 C -0.176 4.176 11 C -0.141 4.141 12 C -0.227 4.227 13 C 0.016 3.984 14 C -0.541 4.541 15 H 0.044 0.956 16 C 0.006 3.994 17 N -0.864 5.864 18 Si 1.109 2.891 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.288 1.288 22 H 0.122 0.878 23 H 0.101 0.899 24 H 0.134 0.866 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.385 0.615 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.392 0.608 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 -14.350 1.337 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.208 4.208 3 C 0.111 3.889 4 C -0.192 4.192 5 O -0.377 6.377 6 C -0.010 4.010 7 N -0.374 5.374 8 C 0.021 3.979 9 C -0.204 4.204 10 C -0.195 4.195 11 C -0.161 4.161 12 C -0.247 4.247 13 C 0.011 3.989 14 C -0.572 4.572 15 H 0.062 0.938 16 C -0.205 4.205 17 N -0.491 5.491 18 Si 0.933 3.067 19 H -0.190 1.190 20 H -0.191 1.191 21 H -0.215 1.215 22 H 0.140 0.860 23 H 0.119 0.881 24 H 0.152 0.848 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.235 0.765 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.863 -13.742 0.727 14.595 hybrid contribution -2.183 0.167 -0.069 2.190 sum -7.046 -13.574 0.658 15.308 Atomic orbital electron populations 1.24045 0.95694 1.03248 0.97835 1.23421 0.96950 0.97685 1.02725 1.20385 0.88236 0.85599 0.94667 1.21686 0.98907 1.02411 0.96178 1.86576 1.50965 1.50125 1.49995 1.21858 0.94682 0.86880 0.97607 1.44125 1.47664 1.20800 1.24816 1.18195 0.95566 0.93492 0.90677 1.20495 1.04539 0.99559 0.95768 1.20691 1.01014 0.97908 0.99912 1.20520 1.01788 0.95246 0.98574 1.20785 1.06545 1.00729 0.96683 1.17633 0.95233 0.91819 0.94167 1.20142 1.00580 1.19218 1.17279 0.93825 1.28081 1.08616 0.90215 0.93575 1.70641 1.26004 1.22355 1.30063 0.83107 0.70027 0.77680 0.75926 1.19004 1.19050 1.21538 0.86031 0.88054 0.84850 0.89472 0.91334 0.94030 0.76516 0.91560 0.92539 0.77291 0.86049 0.85369 0.86288 0.88550 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 13.93 67.78 0.94 -1.88 16 2 C -0.19 -3.60 8.77 25.64 0.22 -3.37 16 3 C 0.15 3.89 1.02 -11.54 -0.01 3.87 16 4 C -0.13 -3.64 8.65 71.98 0.62 -3.02 16 5 O -0.57 -16.04 11.69 -148.98 -1.74 -17.78 16 6 C 0.11 3.38 4.00 86.38 0.35 3.72 16 7 N -0.74 -29.73 5.22 -338.04 -1.77 -31.49 16 8 C 0.12 5.61 6.68 38.99 0.26 5.87 16 9 C -0.18 -7.18 9.30 22.38 0.21 -6.97 16 10 C -0.18 -6.79 10.04 22.41 0.22 -6.56 16 11 C -0.14 -5.95 9.97 22.01 0.22 -5.73 16 12 C -0.23 -11.13 7.20 22.46 0.16 -10.96 16 13 C 0.02 0.85 5.14 -21.17 -0.11 0.75 16 14 C -0.54 -30.65 8.82 23.37 0.21 -30.44 16 15 H 0.04 2.61 6.98 -2.91 -0.02 2.59 16 16 C 0.01 0.31 5.42 85.25 0.46 0.77 16 17 N -0.86 -50.35 13.66 21.83 0.30 -50.05 16 18 Si 1.11 52.11 24.90 68.60 1.71 53.82 16 19 H -0.26 -11.58 6.44 99.48 0.64 -10.94 16 20 H -0.27 -12.34 7.02 99.48 0.70 -11.64 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 23 H 0.10 1.72 6.41 -2.91 -0.02 1.70 16 24 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 25 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 28 H 0.39 8.54 8.05 -74.06 -0.60 7.95 16 29 H 0.07 1.84 7.93 -2.39 -0.02 1.82 16 30 H 0.06 1.58 7.95 -2.38 -0.02 1.56 16 31 H 0.39 17.33 5.48 -92.71 -0.51 16.83 16 32 H 0.12 4.07 6.73 -2.91 -0.02 4.05 16 33 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.12 4.25 8.06 -2.92 -0.02 4.23 16 35 H 0.10 4.77 4.42 -2.91 -0.01 4.75 16 36 H 0.27 15.76 8.73 -92.71 -0.81 14.95 16 Total: -1.00 -63.51 293.04 2.13 -61.38 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.13 Total: 38.10 kcal Atomic # 6 Polarization: -57.73 SS G_CDS: 3.76 Total: -53.97 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.47 Total: -81.55 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.74 Total: -17.78 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 1.71 Total: 53.82 kcal Total: -63.51 2.13 -61.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252564718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.421 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds