Wall clock time and date at job start Sun Mar 29 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47290 * 2 1 4 4 N 1.46495 * 109.47243 * 179.97438 * 3 2 1 5 5 C 1.34778 * 120.00321 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99767 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00150 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47276 * 60.00374 * 7 5 4 9 9 C 1.50701 * 109.47254 * 300.00433 * 7 5 4 10 10 H 1.07998 * 119.99934 * 124.62155 * 9 7 5 11 11 C 1.37879 * 120.00066 * 304.34159 * 9 7 5 12 12 N 1.31521 * 120.00057 * 6.38614 * 11 9 7 13 13 Si 1.86795 * 120.00243 * 186.38187 * 11 9 7 14 14 H 1.48502 * 109.47294 * 60.00126 * 13 11 9 15 15 H 1.48498 * 109.47568 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47204 * 300.00545 * 13 11 9 17 17 C 1.50697 * 109.47039 * 180.02562 * 7 5 4 18 18 C 1.38237 * 120.00283 * 313.11562 * 17 7 5 19 19 C 1.38232 * 120.00497 * 179.81076 * 18 17 7 20 20 C 1.38237 * 119.99539 * 0.39808 * 19 18 17 21 21 C 1.38230 * 120.00431 * 359.85241 * 20 19 18 22 22 C 1.38237 * 120.00167 * 133.38639 * 17 7 5 23 23 H 1.08999 * 109.47424 * 300.00674 * 1 2 3 24 24 H 1.08998 * 109.46620 * 60.00501 * 1 2 3 25 25 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47424 * 239.99326 * 2 1 3 27 27 H 1.09008 * 109.46687 * 119.99502 * 2 1 3 28 28 H 1.08999 * 109.47438 * 59.99334 * 3 2 1 29 29 H 1.09008 * 109.46849 * 299.99403 * 3 2 1 30 30 H 0.97009 * 120.00194 * 359.97438 * 4 3 2 31 31 H 0.96991 * 120.00161 * 179.97438 * 12 11 9 32 32 H 1.08010 * 119.99544 * 359.97438 * 18 17 7 33 33 H 1.08001 * 120.00303 * 180.22770 * 19 18 17 34 34 H 1.08005 * 119.99967 * 179.83335 * 20 19 18 35 35 H 1.08006 * 120.00374 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.00196 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5726 3.6599 -0.0002 7 6 5.6859 2.6096 0.0014 8 1 6.0500 2.0951 -0.8879 9 6 6.1873 1.9001 1.2328 10 1 6.8683 1.0674 1.1366 11 6 5.7810 2.3176 2.4825 12 7 4.8613 3.2507 2.5973 13 14 6.5368 1.5580 4.0125 14 1 8.0022 1.7989 4.0127 15 1 5.9333 2.1745 5.2212 16 1 6.2756 0.0961 4.0201 17 6 6.1883 4.0303 0.0013 18 6 5.6480 4.9545 -0.8734 19 6 6.1061 6.2587 -0.8708 20 6 7.1102 6.6368 0.0008 21 6 7.6541 5.7116 0.8719 22 6 7.1933 4.4082 0.8720 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 3.9901 0.6024 0.0013 31 1 4.5752 3.5441 3.4764 32 1 4.8661 4.6581 -1.5570 33 1 5.6814 6.9816 -1.5516 34 1 7.4700 7.6552 0.0010 35 1 8.4389 6.0069 1.5526 36 1 7.6182 3.6853 1.5527 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290216604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:00 Heat of formation + Delta-G solvation = -44.086747 kcal Electronic energy + Delta-G solvation = -18158.881749 eV Core-core repulsion = 15413.571473 eV Total energy + Delta-G solvation = -2745.310275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67965 -39.14370 -36.42836 -35.45273 -33.14477 -32.60814 -31.37763 -29.20309 -26.93916 -25.48702 -22.98295 -22.53320 -22.10882 -20.81753 -18.60760 -17.54563 -17.02947 -16.68831 -16.58707 -16.34632 -15.60061 -15.34851 -14.92466 -14.33864 -14.02439 -13.99433 -13.79671 -13.61877 -13.14493 -13.03961 -12.78862 -12.67697 -12.57121 -12.27123 -11.96136 -11.77418 -11.70177 -11.42257 -11.17763 -10.66283 -10.10348 -9.59346 -9.39831 -9.11341 -8.08583 -6.26214 0.86132 0.90519 1.42691 1.45637 1.51311 2.35435 2.48927 2.87005 3.19649 3.34937 4.03812 4.12980 4.32931 4.34912 4.42096 4.49536 4.63124 4.71317 4.74432 4.82905 4.95367 5.00149 5.09740 5.14296 5.17640 5.29439 5.40879 5.44590 5.53042 5.70458 5.87528 5.92141 5.97067 6.04952 6.41227 6.51471 6.76748 7.15385 7.42348 7.99666 8.91791 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.009224 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.914666 B = 3034.680179 C = 4235.876265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.128 3.872 4 N -0.730 5.730 5 C 0.549 3.451 6 O -0.589 6.589 7 C 0.045 3.955 8 H 0.068 0.932 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.040 3.960 12 N -0.876 5.876 13 Si 0.940 3.060 14 H -0.267 1.267 15 H -0.298 1.298 16 H -0.266 1.266 17 C -0.039 4.039 18 C -0.118 4.118 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.096 4.096 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.049 0.951 30 H 0.404 0.596 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -3.917 -4.869 6.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.004 3.996 4 N -0.381 5.381 5 C 0.339 3.661 6 O -0.469 6.469 7 C 0.024 3.976 8 H 0.086 0.914 9 C -0.574 4.574 10 H 0.091 0.909 11 C -0.164 4.164 12 N -0.510 5.510 13 Si 0.766 3.234 14 H -0.192 1.192 15 H -0.224 1.224 16 H -0.191 1.191 17 C -0.040 4.040 18 C -0.136 4.136 19 C -0.163 4.163 20 C -0.159 4.159 21 C -0.169 4.169 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.238 0.762 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.786 -3.061 -4.737 5.916 hybrid contribution 0.256 -0.509 1.274 1.395 sum -1.530 -3.569 -3.463 5.203 Atomic orbital electron populations 1.21665 0.93691 1.02860 1.01974 1.21664 0.97491 0.93827 1.03122 1.21178 0.80735 0.98242 0.99443 1.45729 1.06374 1.08930 1.77110 1.20989 0.91031 0.82517 0.71606 1.90478 1.71535 1.33075 1.51810 1.18012 0.89178 0.92089 0.98320 0.91389 1.20877 1.29839 1.17190 0.89478 0.90916 1.25601 0.94538 0.94821 1.01429 1.70202 1.28062 1.29006 1.23769 0.85883 0.79213 0.79056 0.79236 1.19215 1.22433 1.19083 1.20004 0.94148 0.96252 0.93620 1.21058 0.98405 0.94409 0.99742 1.21220 0.98484 0.95819 1.00769 1.21202 0.97919 0.99811 0.96947 1.21343 1.01511 0.93699 1.00301 1.21185 0.96853 0.96023 0.97373 0.93327 0.92145 0.90458 0.89935 0.91646 0.95632 0.93306 0.76150 0.93530 0.88282 0.85136 0.84221 0.85344 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.31 16 2 C -0.12 -3.13 6.05 30.59 0.19 -2.95 16 3 C 0.13 4.60 5.67 86.38 0.49 5.09 16 4 N -0.73 -29.88 5.45 -463.07 -2.53 -32.40 16 5 C 0.55 27.12 5.28 87.66 0.46 27.58 16 6 O -0.59 -33.16 13.86 -3.02 -0.04 -33.20 16 7 C 0.05 2.19 2.78 -13.03 -0.04 2.15 16 8 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 9 C -0.54 -26.41 7.11 25.60 0.18 -26.23 16 10 H 0.07 3.41 7.82 -2.91 -0.02 3.38 16 11 C 0.04 2.07 3.90 84.65 0.33 2.40 16 12 N -0.88 -49.48 11.11 21.45 0.24 -49.24 16 13 Si 0.94 40.95 29.54 68.60 2.03 42.97 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 C -0.04 -1.93 4.63 -19.87 -0.09 -2.02 16 18 C -0.12 -5.47 8.21 22.27 0.18 -5.29 16 19 C -0.14 -5.80 10.05 22.27 0.22 -5.57 16 20 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 21 C -0.15 -6.11 10.05 22.27 0.22 -5.89 16 22 C -0.10 -4.55 8.46 22.27 0.19 -4.36 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.40 14.69 8.36 -92.70 -0.77 13.92 16 31 H 0.26 14.41 8.31 -92.72 -0.77 13.64 16 32 H 0.10 4.66 6.99 -2.91 -0.02 4.64 16 33 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.11 5.55 6.05 -2.91 -0.02 5.53 16 Total: -1.00 -64.58 300.26 3.26 -61.31 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.29 Total: 33.00 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.28 Total: -22.44 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.29 Total: -81.65 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.04 Total: -33.20 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -64.58 3.26 -61.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290216604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.225 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds