Wall clock time and date at job start Sun Mar 29 2020 23:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00346 * 2 1 4 4 C 1.38235 * 120.00326 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46845 * 90.00215 * 6 5 4 8 8 H 1.09006 * 109.46930 * 55.00196 * 7 6 5 9 9 C 1.53001 * 109.46940 * 295.00060 * 7 6 5 10 10 C 1.50698 * 109.46752 * 175.00013 * 7 6 5 11 11 O 1.21211 * 120.00247 * 0.02562 * 10 7 6 12 12 O 1.34320 * 119.99590 * 179.97438 * 10 7 6 13 13 C 1.34925 * 116.99548 * 180.02562 * 12 10 7 14 14 H 1.07994 * 120.00106 * 0.02562 * 13 12 10 15 15 C 1.38752 * 119.99547 * 179.97438 * 13 12 10 16 16 N 1.31444 * 120.00321 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99728 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47126 * 90.00424 * 17 15 13 19 19 H 1.48503 * 109.47138 * 210.00188 * 17 15 13 20 20 H 1.48499 * 109.47245 * 330.00191 * 17 15 13 21 21 C 1.38239 * 120.00062 * 0.02871 * 5 4 3 22 22 C 1.38235 * 120.00123 * 359.97128 * 21 5 4 23 23 H 1.09001 * 109.47250 * 89.99762 * 1 2 3 24 24 H 1.08999 * 109.47144 * 209.99851 * 1 2 3 25 25 H 1.09000 * 109.47061 * 329.99795 * 1 2 3 26 26 H 1.08000 * 120.00356 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.00616 * 179.70664 * 4 3 2 28 28 H 1.08998 * 109.47268 * 210.00355 * 6 5 4 29 29 H 1.08998 * 109.47151 * 330.00502 * 6 5 4 30 30 H 1.09001 * 109.46853 * 180.02562 * 9 7 6 31 31 H 1.08998 * 109.47093 * 299.99811 * 9 7 6 32 32 H 1.08999 * 109.47095 * 60.00418 * 9 7 6 33 33 H 0.96995 * 120.00476 * 180.02562 * 16 15 13 34 34 H 1.08005 * 120.00087 * 180.02562 * 21 5 4 35 35 H 1.07999 * 120.00181 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 6.2898 0.0003 1.4404 8 1 5.8555 -0.8413 1.9801 9 6 5.8856 1.3080 2.1242 10 6 7.7916 -0.1236 1.4411 11 8 8.3936 -0.2039 0.3921 12 8 8.4632 -0.1440 2.6042 13 6 9.8060 -0.2564 2.5342 14 1 10.2927 -0.3247 1.5726 15 6 10.5614 -0.2832 3.6977 16 7 9.9690 -0.1996 4.8681 17 14 12.4203 -0.4395 3.6008 18 1 13.0280 0.9137 3.5327 19 1 12.9211 -1.1468 4.8068 20 1 12.7897 -1.2098 2.3862 21 6 3.5804 -1.1973 -0.0006 22 6 2.1981 -1.1973 -0.0001 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0004 27 1 4.1206 2.1323 -0.0053 28 1 6.1416 -0.8904 -0.5155 29 1 6.1417 0.8895 -0.5161 30 1 6.2500 1.3086 3.1515 31 1 6.3199 2.1495 1.5845 32 1 4.7993 1.3976 2.1237 33 1 10.4971 -0.2179 5.6814 34 1 4.1204 -2.1326 -0.0002 35 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778877925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:14 Heat of formation + Delta-G solvation = -79.405519 kcal Electronic energy + Delta-G solvation = -17323.758892 eV Core-core repulsion = 14479.198418 eV Total energy + Delta-G solvation = -2844.560474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.69146 -38.86906 -35.76256 -34.51143 -32.23106 -31.88300 -30.88226 -28.20316 -25.62180 -25.15830 -22.94050 -22.48308 -20.68961 -19.18723 -17.67372 -16.70865 -15.73468 -15.49902 -15.01976 -14.80388 -14.56814 -14.33115 -13.85985 -13.46936 -13.28040 -12.95699 -12.65700 -12.40832 -12.12642 -11.84915 -11.66751 -11.46411 -11.19386 -10.99153 -10.80024 -10.71019 -10.59268 -10.40408 -10.30441 -9.73965 -8.94098 -8.82561 -8.54017 -8.38635 -6.37299 -4.05023 1.37642 1.45785 3.13647 3.20776 3.26952 3.58913 3.75654 4.00206 4.56014 4.82203 4.83999 5.05930 5.13168 5.19128 5.20280 5.35136 5.44731 5.47986 5.55624 5.68627 5.71206 5.74680 5.96906 6.06714 6.17175 6.20974 6.27401 6.47433 6.53031 6.60571 6.62168 6.80737 6.92762 7.07806 7.43616 7.99781 8.76346 9.11752 9.91707 10.80840 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.055222 B = 0.004086 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.919895 B = 6851.270558 C = 6955.750046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.074 4.074 6 C -0.064 4.064 7 C -0.067 4.067 8 H 0.093 0.907 9 C -0.143 4.143 10 C 0.402 3.598 11 O -0.558 6.558 12 O -0.213 6.213 13 C -0.382 4.382 14 H 0.094 0.906 15 C 0.042 3.958 16 N -0.866 5.866 17 Si 0.942 3.058 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.113 4.113 22 C -0.120 4.120 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.122 0.878 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 1.112 -6.908 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.074 4.074 6 C -0.101 4.101 7 C -0.086 4.086 8 H 0.112 0.888 9 C -0.200 4.200 10 C 0.248 3.752 11 O -0.456 6.456 12 O -0.120 6.120 13 C -0.459 4.459 14 H 0.112 0.888 15 C -0.162 4.162 16 N -0.503 5.503 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.131 4.131 22 C -0.138 4.138 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.802 1.089 -6.922 17.286 hybrid contribution 0.947 -0.107 0.040 0.954 sum -14.855 0.982 -6.883 16.402 Atomic orbital electron populations 1.20757 0.91555 1.02541 1.01990 1.19868 0.95819 0.93344 1.00857 1.20986 0.94171 0.97332 1.01440 1.21100 0.93963 0.97837 0.99905 1.19956 0.95762 0.93117 0.98612 1.20455 0.89536 1.04346 0.95799 1.20672 0.90236 1.00868 0.96819 0.88847 1.21802 1.01001 0.95477 1.01700 1.23170 0.90354 0.78308 0.83361 1.90541 1.70551 1.51060 1.33423 1.83884 1.21969 1.75157 1.30982 1.21220 0.78033 1.51748 0.94880 0.88804 1.25316 1.00463 0.96336 0.94102 1.69992 1.36252 1.46712 0.97377 0.85700 0.80754 0.78728 0.78172 1.19930 1.20361 1.19138 1.21103 0.94048 0.97879 1.00042 1.20986 0.94150 0.97351 1.01329 0.91505 0.91753 0.91751 0.86362 0.85924 0.90156 0.90366 0.90994 0.92594 0.91983 0.92156 0.85960 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.10 -1.08 5.88 -104.62 -0.62 -1.69 16 3 C -0.12 -1.36 9.70 -39.59 -0.38 -1.75 16 4 C -0.11 -1.38 7.96 -39.58 -0.32 -1.70 16 5 C -0.07 -1.03 4.71 -104.62 -0.49 -1.53 16 6 C -0.06 -1.04 4.19 -27.88 -0.12 -1.15 16 7 C -0.07 -1.25 2.82 -91.77 -0.26 -1.51 16 8 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 9 C -0.14 -2.41 8.70 37.16 0.32 -2.09 16 10 C 0.40 10.06 7.20 36.00 0.26 10.32 16 11 O -0.56 -15.15 15.16 -19.05 -0.29 -15.44 16 12 O -0.21 -6.19 9.65 -20.74 -0.20 -6.39 16 13 C -0.38 -11.51 9.65 30.92 0.30 -11.21 16 14 H 0.09 2.84 6.86 -52.49 -0.36 2.48 16 15 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 16 N -0.87 -25.67 13.67 55.48 0.76 -24.92 16 17 Si 0.94 21.60 29.55 -169.99 -5.02 16.58 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 C -0.11 -1.45 9.70 -39.58 -0.38 -1.84 16 22 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.12 1.42 8.04 -52.49 -0.42 0.99 16 28 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 29 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 30 H 0.07 1.34 8.11 -51.93 -0.42 0.91 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.89 6.27 -51.93 -0.33 0.56 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -33.16 303.41 -6.86 -40.02 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.87 Total: 0.93 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.81 Total: -15.35 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.76 Total: -24.92 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.49 Total: -21.83 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.16 -6.86 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778877925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.390 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds