Wall clock time and date at job start Sun Mar 29 2020 23:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.00346 * 2 1 4 4 C 1.38235 * 120.00326 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00196 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46845 * 90.00215 * 6 5 4 8 8 H 1.09006 * 109.46930 * 55.00196 * 7 6 5 9 9 C 1.53001 * 109.46940 * 295.00060 * 7 6 5 10 10 C 1.50698 * 109.46752 * 175.00013 * 7 6 5 11 11 O 1.21211 * 120.00247 * 0.02562 * 10 7 6 12 12 O 1.34320 * 119.99590 * 179.97438 * 10 7 6 13 13 C 1.34925 * 116.99548 * 180.02562 * 12 10 7 14 14 H 1.07994 * 120.00106 * 0.02562 * 13 12 10 15 15 C 1.38752 * 119.99547 * 179.97438 * 13 12 10 16 16 N 1.31444 * 120.00321 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99728 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47126 * 90.00424 * 17 15 13 19 19 H 1.48503 * 109.47138 * 210.00188 * 17 15 13 20 20 H 1.48499 * 109.47245 * 330.00191 * 17 15 13 21 21 C 1.38239 * 120.00062 * 0.02871 * 5 4 3 22 22 C 1.38235 * 120.00123 * 359.97128 * 21 5 4 23 23 H 1.09001 * 109.47250 * 89.99762 * 1 2 3 24 24 H 1.08999 * 109.47144 * 209.99851 * 1 2 3 25 25 H 1.09000 * 109.47061 * 329.99795 * 1 2 3 26 26 H 1.08000 * 120.00356 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.00616 * 179.70664 * 4 3 2 28 28 H 1.08998 * 109.47268 * 210.00355 * 6 5 4 29 29 H 1.08998 * 109.47151 * 330.00502 * 6 5 4 30 30 H 1.09001 * 109.46853 * 180.02562 * 9 7 6 31 31 H 1.08998 * 109.47093 * 299.99811 * 9 7 6 32 32 H 1.08999 * 109.47095 * 60.00418 * 9 7 6 33 33 H 0.96995 * 120.00476 * 180.02562 * 16 15 13 34 34 H 1.08005 * 120.00087 * 180.02562 * 21 5 4 35 35 H 1.07999 * 120.00181 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 6.2898 0.0003 1.4404 8 1 5.8555 -0.8413 1.9801 9 6 5.8856 1.3080 2.1242 10 6 7.7916 -0.1236 1.4411 11 8 8.3936 -0.2039 0.3921 12 8 8.4632 -0.1440 2.6042 13 6 9.8060 -0.2564 2.5342 14 1 10.2927 -0.3247 1.5726 15 6 10.5614 -0.2832 3.6977 16 7 9.9690 -0.1996 4.8681 17 14 12.4203 -0.4395 3.6008 18 1 13.0280 0.9137 3.5327 19 1 12.9211 -1.1468 4.8068 20 1 12.7897 -1.2098 2.3862 21 6 3.5804 -1.1973 -0.0006 22 6 2.1981 -1.1973 -0.0001 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1324 -0.0004 27 1 4.1206 2.1323 -0.0053 28 1 6.1416 -0.8904 -0.5155 29 1 6.1417 0.8895 -0.5161 30 1 6.2500 1.3086 3.1515 31 1 6.3199 2.1495 1.5845 32 1 4.7993 1.3976 2.1237 33 1 10.4971 -0.2179 5.6814 34 1 4.1204 -2.1326 -0.0002 35 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778877925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:13 Heat of formation + Delta-G solvation = -97.542061 kcal Electronic energy + Delta-G solvation = -17324.545352 eV Core-core repulsion = 14479.198418 eV Total energy + Delta-G solvation = -2845.346934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27330 -40.29694 -37.59064 -36.12885 -34.31921 -33.09681 -31.78572 -29.28593 -27.67859 -26.40636 -24.42250 -23.49997 -21.82930 -20.84103 -19.88048 -18.54178 -17.12230 -16.72863 -16.54349 -16.27071 -16.22266 -15.82740 -15.03135 -14.77575 -14.45226 -14.22912 -13.92654 -13.71282 -13.38824 -13.16863 -13.09169 -12.87961 -12.77508 -12.38310 -12.24779 -12.14370 -12.08772 -11.88496 -11.84523 -11.71453 -10.93525 -10.70497 -9.76662 -9.34377 -8.54739 -6.35005 0.43158 0.54760 1.29536 1.33072 1.50465 1.63553 2.10891 2.67944 2.92975 2.96142 3.83697 3.90929 3.93673 4.08125 4.15786 4.20553 4.26763 4.44726 4.64068 4.68184 4.78836 4.82142 4.88537 4.90537 4.93596 5.01947 5.14537 5.16795 5.25160 5.28942 5.35174 5.56355 5.75199 5.78833 5.82465 6.17716 6.65109 6.90171 7.76714 8.65888 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.055222 B = 0.004086 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.919895 B = 6851.270558 C = 6955.750046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.093 4.093 6 C -0.052 4.052 7 C -0.059 4.059 8 H 0.103 0.897 9 C -0.133 4.133 10 C 0.398 3.602 11 O -0.583 6.583 12 O -0.242 6.242 13 C -0.424 4.424 14 H 0.080 0.920 15 C -0.004 4.004 16 N -0.902 5.902 17 Si 1.017 2.983 18 H -0.259 1.259 19 H -0.259 1.259 20 H -0.264 1.264 21 C -0.125 4.125 22 C -0.126 4.126 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.142 0.858 27 H 0.130 0.870 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.279 0.721 34 H 0.123 0.877 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 1.414 -6.978 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.093 4.093 6 C -0.089 4.089 7 C -0.078 4.078 8 H 0.121 0.879 9 C -0.190 4.190 10 C 0.246 3.754 11 O -0.482 6.482 12 O -0.150 6.150 13 C -0.500 4.500 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.539 5.539 17 Si 0.836 3.164 18 H -0.184 1.184 19 H -0.183 1.183 20 H -0.189 1.189 21 C -0.143 4.143 22 C -0.144 4.144 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.160 0.840 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.192 1.396 -6.997 18.614 hybrid contribution 1.228 -0.208 0.005 1.246 sum -15.964 1.188 -6.992 17.468 Atomic orbital electron populations 1.20821 0.89283 1.03616 1.03039 1.20293 0.97559 0.92936 0.99014 1.21295 0.93664 0.98649 1.00652 1.21241 0.94837 0.97532 0.99874 1.19734 0.93908 0.94320 1.01300 1.20288 0.91667 1.03431 0.93529 1.20828 0.85417 1.02309 0.99243 0.87907 1.21742 1.02945 0.94268 1.00039 1.24485 0.92715 0.76077 0.82118 1.90503 1.71845 1.51751 1.34065 1.83911 1.21894 1.76272 1.32882 1.21430 0.78942 1.54495 0.95143 0.90242 1.26534 1.05993 0.94733 0.93128 1.70074 1.38772 1.46777 0.98294 0.84640 0.73443 0.79509 0.78852 1.18404 1.18293 1.18861 1.21236 0.95028 0.97626 1.00389 1.21263 0.93568 0.98726 1.00816 0.90341 0.90829 0.90625 0.83997 0.85232 0.91482 0.90942 0.93026 0.92442 0.88752 0.91177 0.85913 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.23 0.71 -0.67 16 2 C -0.10 -1.85 5.88 -19.87 -0.12 -1.97 16 3 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 4 C -0.12 -2.73 7.96 22.27 0.18 -2.55 16 5 C -0.09 -2.49 4.71 -19.86 -0.09 -2.59 16 6 C -0.05 -1.70 4.19 29.85 0.13 -1.57 16 7 C -0.06 -2.24 2.82 -11.54 -0.03 -2.28 16 8 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 9 C -0.13 -4.47 8.70 71.98 0.63 -3.84 16 10 C 0.40 20.70 7.20 71.24 0.51 21.21 16 11 O -0.58 -32.94 15.16 20.77 0.31 -32.62 16 12 O -0.24 -14.62 9.65 14.73 0.14 -14.48 16 13 C -0.42 -26.44 9.65 67.94 0.66 -25.79 16 14 H 0.08 5.03 6.86 -2.91 -0.02 5.01 16 15 C 0.00 -0.21 5.49 84.87 0.47 0.26 16 16 N -0.90 -54.11 13.67 21.62 0.30 -53.81 16 17 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 22 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 23 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 26 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 27 H 0.13 2.77 8.04 -2.91 -0.02 2.74 16 28 H 0.07 2.33 7.90 -2.39 -0.02 2.31 16 29 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 30 H 0.05 1.94 8.11 -2.39 -0.02 1.92 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.56 6.27 -2.39 -0.01 2.55 16 33 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -73.30 303.41 7.53 -65.77 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.07 Total: 16.20 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.68 Total: -27.28 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.30 Total: -53.81 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: 0.46 Total: -47.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -73.30 7.53 -65.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778877925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.775 kcal (2) G-P(sol) polarization free energy of solvation -73.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds