Wall clock time and date at job start Sun Mar 29 2020 22:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38129 * 120.35540 * 2 1 4 4 C 1.39641 * 118.49004 * 180.02562 * 3 2 1 5 5 N 1.38526 * 120.48232 * 180.02562 * 4 3 2 6 6 N 1.32924 * 119.02787 * 359.97438 * 4 3 2 7 7 C 1.32446 * 120.61841 * 0.02562 * 6 4 3 8 8 N 1.38393 * 119.18174 * 179.97438 * 7 6 4 9 9 C 1.46506 * 119.99831 * 0.02562 * 8 7 6 10 10 C 1.52992 * 109.46978 * 182.55650 * 9 8 7 11 11 C 1.50698 * 115.55168 * 65.16826 * 10 9 8 12 12 H 1.08003 * 119.99924 * 265.13723 * 11 10 9 13 13 C 1.37881 * 119.99967 * 85.13849 * 11 10 9 14 14 N 1.31509 * 119.99764 * 353.24037 * 13 11 10 15 15 Si 1.86801 * 119.99834 * 173.23477 * 13 11 10 16 16 H 1.48505 * 109.46902 * 90.00419 * 15 13 11 17 17 H 1.48500 * 109.47174 * 210.00089 * 15 13 11 18 18 H 1.48496 * 109.47425 * 330.00350 * 15 13 11 19 19 C 1.52998 * 117.49852 * 279.49755 * 10 9 8 20 20 C 1.53006 * 117.50114 * 210.83945 * 10 9 8 21 21 N 1.32488 * 120.35184 * 180.24433 * 2 1 3 22 22 H 1.08991 * 109.46744 * 90.00386 * 1 2 3 23 23 H 1.09000 * 109.47045 * 210.00318 * 1 2 3 24 24 H 1.09003 * 109.46778 * 330.00281 * 1 2 3 25 25 H 1.07999 * 120.74963 * 359.97025 * 3 2 1 26 26 H 0.97002 * 119.99535 * 179.97438 * 5 4 3 27 27 H 0.96996 * 120.00740 * 359.97438 * 5 4 3 28 28 H 0.96991 * 120.00196 * 179.97438 * 8 7 6 29 29 H 1.08999 * 109.46925 * 62.55410 * 9 8 7 30 30 H 1.09001 * 109.47276 * 302.55888 * 9 8 7 31 31 H 0.97007 * 119.99485 * 185.04240 * 14 13 11 32 32 H 1.09000 * 117.50204 * 359.97438 * 19 10 9 33 33 H 1.09001 * 117.50059 * 145.02365 * 19 10 9 34 34 H 1.08998 * 117.50164 * 214.98305 * 20 10 9 35 35 H 1.09007 * 117.49084 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2051 1.1919 0.0000 4 6 3.6008 1.1465 -0.0005 5 7 4.3420 2.3168 0.0000 6 7 4.2076 -0.0362 -0.0005 7 6 3.5015 -1.1567 -0.0005 8 7 4.1639 -2.3718 -0.0010 9 6 5.6286 -2.4075 -0.0010 10 6 6.1032 -3.8605 -0.0660 11 6 5.7633 -4.5992 -1.3348 12 1 4.8729 -5.2085 -1.3830 13 6 6.5893 -4.4972 -2.4342 14 7 7.5986 -3.6543 -2.4223 15 14 6.2746 -5.5566 -3.9402 16 1 5.3638 -4.8393 -4.8684 17 1 7.5614 -5.8358 -4.6267 18 1 5.6482 -6.8367 -3.5230 19 6 6.1079 -4.6611 1.2378 20 6 7.4294 -4.2018 0.6165 21 7 2.1766 -1.1433 -0.0049 22 1 -0.3632 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6833 2.1375 -0.0005 26 1 5.3112 2.2769 0.0000 27 1 3.8919 3.1760 0.0003 28 1 3.6586 -3.1996 -0.0006 29 1 6.0033 -1.9433 0.9112 30 1 6.0053 -1.8631 -0.8669 31 1 8.1352 -3.5290 -3.2207 32 1 5.7734 -4.1525 2.1420 33 1 5.8657 -5.7222 1.1778 34 1 8.0559 -4.9608 0.1480 35 1 7.9638 -3.3909 1.1115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893649899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:44 Heat of formation + Delta-G solvation = 72.713192 kcal Electronic energy + Delta-G solvation = -17659.723052 eV Core-core repulsion = 14886.344442 eV Total energy + Delta-G solvation = -2773.378610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.33532 -37.11436 -35.46036 -34.56023 -32.01769 -31.81593 -30.07421 -27.68381 -26.06081 -25.02348 -22.51509 -21.49586 -21.03060 -19.27799 -17.86008 -17.23147 -16.04672 -15.29990 -15.03815 -14.90549 -14.77073 -14.58257 -14.09303 -13.45325 -13.05887 -12.77588 -12.72792 -12.23796 -12.12329 -11.53966 -11.22677 -10.96810 -10.87974 -10.49560 -10.32687 -10.20804 -9.64287 -9.55559 -8.86551 -8.56793 -8.45284 -8.37210 -8.17288 -7.22825 -6.04636 -4.11894 1.79378 2.00327 3.29152 3.36119 3.39251 3.45413 3.91198 4.39389 4.52004 4.71603 5.20855 5.23928 5.35960 5.51132 5.57640 5.69069 5.73755 5.95537 6.06436 6.16084 6.36939 6.51734 6.59962 6.64614 6.73627 6.94348 7.10516 7.25309 7.41567 7.47445 7.51457 7.75109 7.85933 8.12062 8.35607 8.38412 8.88408 9.14658 9.54361 11.03249 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.005951 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.342264 B = 4703.986106 C = 4905.481144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.237 3.763 3 C -0.370 4.370 4 C 0.475 3.525 5 N -0.843 5.843 6 N -0.624 5.624 7 C 0.607 3.393 8 N -0.666 5.666 9 C 0.181 3.819 10 C 0.026 3.974 11 C -0.498 4.498 12 H 0.060 0.940 13 C 0.074 3.926 14 N -0.876 5.876 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.211 4.211 20 C -0.146 4.146 21 N -0.613 5.613 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.127 0.873 26 H 0.404 0.596 27 H 0.406 0.594 28 H 0.414 0.586 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 10.067 4.956 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 C -0.402 4.402 4 C 0.227 3.773 5 N -0.387 5.387 6 N -0.360 5.360 7 C 0.249 3.751 8 N -0.297 5.297 9 C 0.057 3.943 10 C 0.025 3.975 11 C -0.535 4.535 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.512 5.512 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.248 4.248 20 C -0.185 4.185 21 N -0.342 5.342 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.145 0.855 26 H 0.233 0.767 27 H 0.236 0.764 28 H 0.251 0.749 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.629 9.118 4.854 12.842 hybrid contribution -0.322 0.421 -0.967 1.102 sum -7.951 9.539 3.887 13.012 Atomic orbital electron populations 1.20682 0.88929 1.03149 1.03026 1.20913 0.96224 0.87241 0.86556 1.21332 0.93219 0.99870 1.25814 1.18117 0.87931 0.86297 0.84955 1.42091 1.09582 1.04424 1.82639 1.67360 1.40315 0.96758 1.31561 1.19026 0.84364 0.86175 0.85582 1.44423 1.07623 1.02865 1.74839 1.20957 0.76055 0.97624 0.99625 1.19066 0.97092 0.90457 0.90889 1.20355 1.08664 1.28942 0.95561 0.92174 1.24968 0.94497 0.95126 0.98403 1.69977 1.18440 1.34435 1.28378 0.86635 0.77542 0.81131 0.82999 1.20721 1.21183 1.19759 1.23026 1.04197 1.00018 0.97543 1.22482 0.90664 1.02024 1.03287 1.67780 1.07515 1.30196 1.28676 0.90261 0.90414 0.90827 0.85506 0.76664 0.76402 0.74905 0.94852 0.90813 0.92957 0.91624 0.90316 0.89827 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.21 36.01 0.37 -0.74 16 2 C 0.24 3.75 6.81 -82.35 -0.56 3.19 16 3 C -0.37 -5.41 9.70 -39.10 -0.38 -5.79 16 4 C 0.48 7.73 7.82 -154.84 -1.21 6.52 16 5 N -0.84 -9.81 9.06 31.22 0.28 -9.53 16 6 N -0.62 -12.50 9.62 -13.17 -0.13 -12.63 16 7 C 0.61 12.72 8.43 -322.88 -2.72 10.00 16 8 N -0.67 -14.41 5.61 -62.32 -0.35 -14.76 16 9 C 0.18 4.20 5.47 -4.04 -0.02 4.18 16 10 C 0.03 0.62 1.36 -155.66 -0.21 0.41 16 11 C -0.50 -13.26 8.68 -34.44 -0.30 -13.56 16 12 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 13 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 14 N -0.88 -24.64 12.94 55.43 0.72 -23.93 16 15 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 20 C -0.15 -3.38 9.44 -26.69 -0.25 -3.64 16 21 N -0.61 -11.79 10.39 -10.24 -0.11 -11.90 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.40 4.55 8.95 -40.82 -0.37 4.19 16 27 H 0.41 3.26 8.84 -40.82 -0.36 2.90 16 28 H 0.41 8.79 8.54 -40.82 -0.35 8.45 16 29 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 31 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 35 H 0.06 1.42 8.14 -51.92 -0.42 0.99 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -30.49 305.46 -10.50 -40.99 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -4.84 Total: 13.29 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -5.65 Total: -2.30 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: 0.42 Total: -72.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.49 -10.50 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893649899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.699 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds