Wall clock time and date at job start Sun Mar 29 2020 23:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47130 * 2 1 4 4 N 1.29939 * 125.36912 * 90.34532 * 3 2 1 5 5 C 1.36073 * 108.48586 * 180.16985 * 4 3 2 6 6 C 1.47325 * 126.45902 * 179.83021 * 5 4 3 7 7 O 1.21637 * 120.00014 * 184.26883 * 6 5 4 8 8 N 1.34779 * 119.99822 * 4.25854 * 6 5 4 9 9 C 1.36945 * 119.99973 * 5.15923 * 8 6 5 10 10 H 1.08002 * 119.99837 * 323.98295 * 9 8 6 11 11 C 1.38983 * 120.00219 * 143.98764 * 9 8 6 12 12 N 1.31406 * 120.00200 * 352.47004 * 11 9 8 13 13 Si 1.86808 * 120.00173 * 172.46700 * 11 9 8 14 14 H 1.48500 * 109.46949 * 60.00187 * 13 11 9 15 15 H 1.48498 * 109.47011 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46965 * 300.00038 * 13 11 9 17 17 C 1.46502 * 119.99797 * 185.42607 * 8 6 5 18 18 C 1.47190 * 109.47095 * 276.45851 * 17 8 6 19 19 N 8.30852 * 122.56083 * 34.18529 * 2 1 3 20 20 C 1.36185 * 107.08531 * 359.55809 * 5 4 3 21 21 O 1.34051 * 125.36870 * 270.02984 * 3 2 1 22 22 H 1.08997 * 109.47176 * 299.99923 * 1 2 3 23 23 H 1.09000 * 109.46929 * 60.00264 * 1 2 3 24 24 H 1.09003 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47176 * 240.00076 * 2 1 3 26 26 H 1.09000 * 109.46929 * 119.99736 * 2 1 3 27 27 H 0.96998 * 120.00378 * 179.97438 * 12 11 9 28 28 H 1.08992 * 109.47133 * 36.46268 * 17 8 6 29 29 H 1.09006 * 109.46346 * 156.45820 * 17 8 6 30 30 H 1.07999 * 126.53543 * 180.29468 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2891 2.1278 1.0596 5 6 2.7173 3.3575 0.6644 6 6 3.1117 4.4716 1.5440 7 8 3.4037 5.5508 1.0648 8 7 3.1487 4.2951 2.8797 9 6 2.9230 3.0540 3.4128 10 1 2.2001 2.3938 2.9569 11 6 3.6242 2.6442 4.5407 12 7 4.6059 3.3821 5.0082 13 14 3.1711 1.0444 5.3921 14 1 3.3301 -0.0848 4.4408 15 1 4.0624 0.8364 6.5615 16 1 1.7604 1.1102 5.8510 17 6 3.4245 5.4321 3.7614 18 6 4.8790 5.6356 3.8591 19 7 6.0016 5.7927 3.9346 20 6 2.7184 3.3622 -0.6974 21 8 2.2905 2.1526 -1.0931 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.0950 3.0963 5.7955 28 1 2.9586 6.3292 3.3540 29 1 3.0184 5.2299 4.7526 30 1 3.0086 4.1825 -1.3373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116638049.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:59 Heat of formation + Delta-G solvation = 27.677850 kcal Electronic energy + Delta-G solvation = -17984.800142 eV Core-core repulsion = 14975.916896 eV Total energy + Delta-G solvation = -3008.883245 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 249.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.81293 -38.65313 -35.50789 -34.60207 -34.18163 -33.53666 -31.58142 -29.08042 -27.63173 -25.00077 -24.09779 -22.78336 -20.78414 -19.47361 -18.09809 -16.94369 -16.28929 -16.02919 -15.90955 -14.75997 -14.48732 -14.34959 -14.14874 -13.39121 -13.21351 -12.80120 -12.62564 -12.50299 -11.87412 -11.72669 -11.46725 -11.21559 -11.14314 -11.09366 -10.93967 -10.55310 -10.47762 -10.19019 -9.62389 -9.22398 -8.84083 -8.43098 -7.83222 -6.41551 -4.07949 1.72424 2.70359 3.06823 3.19143 3.22495 3.24666 3.75322 4.15155 4.22488 4.32507 4.38905 4.82043 5.01543 5.05480 5.19651 5.37641 5.52752 5.54206 5.75732 5.84549 5.94339 6.10283 6.20170 6.25757 6.36760 6.51933 6.70649 7.59578 7.64342 8.15540 8.46569 9.00813 9.06362 9.26934 9.66237 10.64024 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.009925 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.299589 B = 2820.486553 C = 4051.526741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.023 4.023 3 C 0.164 3.836 4 N -0.420 5.420 5 C -0.017 4.017 6 C 0.538 3.462 7 O -0.596 6.596 8 N -0.418 5.418 9 C -0.332 4.332 10 H 0.139 0.861 11 C 0.036 3.964 12 N -0.876 5.876 13 Si 0.931 3.069 14 H -0.271 1.271 15 H -0.288 1.288 16 H -0.271 1.271 17 C 0.233 3.767 18 C 0.259 3.741 19 N -0.481 5.481 20 C -0.031 4.031 21 O -0.208 6.208 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.273 0.727 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 -6.226 -6.716 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 C -0.044 4.044 4 N -0.149 5.149 5 C -0.137 4.137 6 C 0.327 3.673 7 O -0.482 6.482 8 N -0.135 5.135 9 C -0.460 4.460 10 H 0.155 0.845 11 C -0.169 4.169 12 N -0.513 5.513 13 Si 0.758 3.242 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.197 1.197 17 C 0.106 3.894 18 C -0.059 4.059 19 N -0.161 5.161 20 C -0.104 4.104 21 O -0.095 6.095 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -7.396 -5.699 -6.019 11.109 hybrid contribution -0.212 -0.711 -0.072 0.746 sum -7.608 -6.410 -6.091 11.665 Atomic orbital electron populations 1.21777 0.93490 1.02465 1.02991 1.19977 0.96546 0.84762 1.04815 1.26546 1.01507 0.97282 0.79080 1.71267 1.13665 1.02616 1.27400 1.21782 1.05992 0.93799 0.92158 1.16941 0.82538 0.85701 0.82145 1.90690 1.55642 1.26565 1.75284 1.43380 1.58859 1.08547 1.02692 1.20637 1.22826 0.91242 1.11279 0.84455 1.25582 0.94134 0.99025 0.98163 1.69654 1.19149 1.38658 1.23849 0.85919 0.78290 0.81661 0.78357 1.19658 1.21316 1.19668 1.18526 0.83706 0.90057 0.97092 1.28896 0.95256 0.90260 0.91496 1.80805 1.12909 1.12217 1.10179 1.25054 1.02769 0.86598 0.96020 1.84271 1.64192 1.22788 1.38204 0.91489 0.92403 0.91360 0.89476 0.87705 0.91578 0.89365 0.86725 0.76179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.90 37.16 0.37 -1.09 16 2 C -0.02 -0.26 6.56 -27.88 -0.18 -0.45 16 3 C 0.16 2.70 7.56 -13.08 -0.10 2.60 16 4 N -0.42 -8.55 7.95 -7.66 -0.06 -8.61 16 5 C -0.02 -0.36 6.70 -83.03 -0.56 -0.91 16 6 C 0.54 13.01 7.54 -12.56 -0.09 12.91 16 7 O -0.60 -15.08 16.60 5.25 0.09 -15.00 16 8 N -0.42 -10.20 2.55 -119.20 -0.30 -10.50 16 9 C -0.33 -8.19 8.40 -14.99 -0.13 -8.31 16 10 H 0.14 3.33 5.15 -52.49 -0.27 3.06 16 11 C 0.04 0.89 5.12 -17.46 -0.09 0.80 16 12 N -0.88 -22.97 9.57 55.50 0.53 -22.44 16 13 Si 0.93 19.56 29.56 -169.99 -5.02 14.54 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 C 0.23 5.20 5.04 -6.83 -0.03 5.17 16 18 C 0.26 6.51 12.97 -20.76 -0.27 6.24 16 19 N -0.48 -12.85 18.54 42.16 0.78 -12.07 16 20 C -0.03 -0.55 11.95 29.99 0.36 -0.19 16 21 O -0.21 -3.38 10.73 6.46 0.07 -3.32 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.09 1.74 7.71 -51.93 -0.40 1.34 16 29 H 0.11 2.44 7.34 -51.93 -0.38 2.06 16 30 H 0.22 3.21 8.06 -52.49 -0.42 2.78 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -31.75 275.84 -3.21 -34.96 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.72 Total: 1.51 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: -0.73 Total: 16.77 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.95 Total: -53.62 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.75 -3.21 -34.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116638049.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.636 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds