Wall clock time and date at job start Sun Mar 29 2020 23:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39803 * 126.51960 * 2 1 4 4 C 1.35481 * 107.84138 * 180.30227 * 3 2 1 5 5 N 1.34962 * 108.98757 * 359.74074 * 4 3 2 6 6 H 0.97004 * 125.63350 * 179.97438 * 5 4 3 7 7 C 1.37695 * 108.72695 * 359.97438 * 5 4 3 8 8 C 1.46496 * 126.25977 * 179.97438 * 7 5 4 9 9 O 1.21625 * 119.99681 * 174.70792 * 8 7 5 10 10 O 1.34890 * 119.99983 * 354.71790 * 8 7 5 11 11 C 1.45204 * 116.99703 * 185.08201 * 10 8 7 12 12 C 1.53004 * 109.47021 * 175.45066 * 11 10 8 13 13 C 1.50700 * 115.54754 * 64.60525 * 12 11 10 14 14 H 1.07999 * 120.00124 * 266.41059 * 13 12 11 15 15 C 1.37875 * 119.99937 * 86.42048 * 13 12 11 16 16 N 1.31519 * 120.00274 * 178.57485 * 15 13 12 17 17 Si 1.86804 * 119.99931 * 358.57008 * 15 13 12 18 18 H 1.48494 * 109.47089 * 90.67454 * 17 15 13 19 19 H 1.48504 * 109.46931 * 210.67389 * 17 15 13 20 20 H 1.48500 * 109.47038 * 330.67093 * 17 15 13 21 21 C 1.52998 * 117.49987 * 278.93733 * 12 11 10 22 22 C 1.52993 * 117.49818 * 210.27671 * 12 11 10 23 23 H 1.09002 * 109.47073 * 270.14085 * 1 2 3 24 24 H 1.09003 * 109.46946 * 30.13486 * 1 2 3 25 25 H 1.08994 * 109.47429 * 150.13540 * 1 2 3 26 26 H 1.07994 * 126.07444 * 0.04736 * 3 2 1 27 27 H 1.08005 * 125.50917 * 179.72185 * 4 3 2 28 28 H 1.08993 * 109.47489 * 295.45133 * 11 10 8 29 29 H 1.09001 * 109.47032 * 55.45252 * 11 10 8 30 30 H 0.97000 * 119.99975 * 179.97438 * 16 15 13 31 31 H 1.09001 * 117.49848 * 359.97438 * 21 12 11 32 32 H 1.08993 * 117.50031 * 145.01899 * 21 12 11 33 33 H 1.09004 * 117.50006 * 214.97939 * 22 12 11 34 34 H 1.09003 * 117.50388 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6224 0.6897 -0.0068 5 7 3.6297 -0.6599 -0.0053 6 1 4.4211 -1.2208 -0.0095 7 6 2.3280 -1.1091 0.0032 8 6 1.8943 -2.5083 0.0069 9 8 0.7131 -2.7785 0.1117 10 8 2.8050 -3.4970 -0.1056 11 6 2.2963 -4.8531 -0.2088 12 6 3.4605 -5.8182 -0.4415 13 6 4.4553 -5.9205 0.6859 14 1 5.3415 -5.3033 0.6817 15 6 4.2341 -6.8021 1.7226 16 7 5.1158 -6.9116 2.6922 17 14 2.6817 -7.8409 1.7501 18 1 2.9360 -9.1293 1.0568 19 1 2.2879 -8.1053 3.1573 20 1 1.5873 -7.1139 1.0580 21 6 3.9948 -5.9493 -1.8692 22 6 3.1767 -7.0855 -1.2504 23 1 -0.3633 0.0025 1.0277 24 1 -0.3633 0.8888 -0.5159 25 1 -0.3634 -0.8911 -0.5117 26 1 2.0159 2.1540 0.0007 27 1 4.4982 1.3216 -0.0128 28 1 1.7825 -5.1197 0.7147 29 1 1.5988 -4.9170 -1.0440 30 1 4.9600 -7.5316 3.4217 31 1 3.5166 -5.3484 -2.6427 32 1 5.0657 -6.1099 -1.9930 33 1 3.7097 -7.9932 -0.9674 34 1 2.1604 -7.2320 -1.6164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118460774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:24 Heat of formation + Delta-G solvation = -19.599994 kcal Electronic energy + Delta-G solvation = -17950.294662 eV Core-core repulsion = 15042.901639 eV Total energy + Delta-G solvation = -2907.393023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27244 -39.38653 -37.09817 -35.45179 -32.49479 -32.15087 -29.93335 -27.57261 -26.62479 -25.29641 -22.59521 -21.72293 -20.75464 -19.27558 -18.86877 -18.33220 -16.83092 -16.08598 -15.90915 -15.16482 -14.84201 -14.19484 -13.89846 -13.66030 -13.12038 -12.93619 -12.63878 -12.60145 -12.37575 -12.24788 -12.20464 -11.57849 -11.18833 -10.92889 -10.61566 -10.32748 -10.08734 -10.01765 -9.67546 -9.08818 -8.75740 -8.64374 -8.63727 -8.18474 -6.16827 -4.20169 1.46628 2.72840 3.05256 3.24412 3.30579 3.34789 3.37221 3.44474 4.36092 4.79056 5.01388 5.09029 5.12657 5.26787 5.38359 5.61983 5.74691 5.89298 5.90050 5.93586 5.95449 6.08392 6.14221 6.22356 6.36851 6.39561 6.61621 6.75850 6.83944 6.97499 7.01591 7.09717 7.47959 7.64030 8.24492 8.44195 8.86151 9.45351 10.94919 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.006039 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.965925 B = 4635.080839 C = 4743.718692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.076 4.076 3 C -0.219 4.219 4 C 0.030 3.970 5 N -0.521 5.521 6 H 0.429 0.571 7 C -0.037 4.037 8 C 0.526 3.474 9 O -0.511 6.511 10 O -0.336 6.336 11 C 0.111 3.889 12 C -0.007 4.007 13 C -0.483 4.483 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.291 1.291 20 H -0.260 1.260 21 C -0.174 4.174 22 C -0.189 4.189 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.143 0.857 27 H 0.172 0.828 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 12.466 -6.601 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.243 4.243 4 C -0.108 4.108 5 N -0.115 5.115 6 H 0.267 0.733 7 C -0.148 4.148 8 C 0.371 3.629 9 O -0.401 6.401 10 O -0.252 6.252 11 C 0.038 3.962 12 C -0.008 4.008 13 C -0.520 4.520 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.532 5.532 17 Si 0.704 3.296 18 H -0.201 1.201 19 H -0.218 1.218 20 H -0.185 1.185 21 C -0.211 4.211 22 C -0.227 4.227 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.189 0.811 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.766 12.072 -6.374 14.460 hybrid contribution -0.395 -0.950 0.208 1.049 sum -5.161 11.122 -6.167 13.725 Atomic orbital electron populations 1.20325 0.89314 1.02631 1.02312 1.19942 0.95823 0.90558 1.02048 1.20725 0.91738 0.98573 1.13309 1.21941 0.99614 0.83246 1.06017 1.41923 1.07835 1.07210 1.54579 0.73257 1.19339 0.84322 0.90699 1.20488 1.19889 0.84427 0.84967 0.73581 1.90820 1.18067 1.84010 1.47223 1.86613 1.38779 1.17391 1.82406 1.23060 0.96126 0.76469 1.00589 1.19341 0.95752 0.93119 0.92544 1.20186 1.05981 1.22870 1.02941 0.90226 1.24989 0.96163 0.96411 0.95000 1.69880 1.35104 1.36949 1.11303 0.86907 0.84481 0.81182 0.77033 1.20126 1.21756 1.18485 1.22825 0.99445 1.01926 0.96903 1.23007 0.99592 0.94089 1.05964 0.91376 0.91963 0.90491 0.83924 0.81085 0.91263 0.93443 0.92448 0.90834 0.89147 0.88707 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.78 36.00 0.35 -0.81 16 2 C -0.08 -1.10 6.21 -104.13 -0.65 -1.75 16 3 C -0.22 -2.58 10.76 -39.98 -0.43 -3.01 16 4 C 0.03 0.32 11.87 -17.16 -0.20 0.12 16 5 N -0.52 -7.00 6.07 -9.53 -0.06 -7.06 16 6 H 0.43 5.27 8.96 -40.82 -0.37 4.91 16 7 C -0.04 -0.61 7.10 -82.00 -0.58 -1.19 16 8 C 0.53 10.38 7.92 34.06 0.27 10.65 16 9 O -0.51 -10.81 14.68 -19.36 -0.28 -11.09 16 10 O -0.34 -7.17 10.16 -41.01 -0.42 -7.59 16 11 C 0.11 2.47 4.94 37.16 0.18 2.65 16 12 C -0.01 -0.15 1.06 -155.66 -0.17 -0.32 16 13 C -0.48 -13.27 9.35 -34.44 -0.32 -13.59 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 17 Si 0.88 21.48 24.90 -169.99 -4.23 17.25 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.26 -6.11 5.72 56.52 0.32 -5.78 16 21 C -0.17 -3.48 9.96 -26.70 -0.27 -3.74 16 22 C -0.19 -3.93 7.64 -26.70 -0.20 -4.13 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.13 6.63 -51.93 -0.34 0.79 16 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.07 1.64 6.56 -51.93 -0.34 1.30 16 29 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 33 H 0.09 2.03 7.32 -51.93 -0.38 1.65 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -31.73 292.50 -6.37 -38.09 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.45 Total: 5.13 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.11 Total: -13.05 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.72 Total: -33.15 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.70 Total: -18.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.23 Total: 17.25 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.73 -6.37 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118460774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.493 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds