Wall clock time and date at job start Sun Mar 29 2020 23:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39803 * 126.51960 * 2 1 4 4 C 1.35481 * 107.84138 * 180.30227 * 3 2 1 5 5 N 1.34962 * 108.98757 * 359.74074 * 4 3 2 6 6 H 0.97004 * 125.63350 * 179.97438 * 5 4 3 7 7 C 1.37695 * 108.72695 * 359.97438 * 5 4 3 8 8 C 1.46496 * 126.25977 * 179.97438 * 7 5 4 9 9 O 1.21625 * 119.99681 * 174.70792 * 8 7 5 10 10 O 1.34890 * 119.99983 * 354.71790 * 8 7 5 11 11 C 1.45204 * 116.99703 * 185.08201 * 10 8 7 12 12 C 1.53004 * 109.47021 * 175.45066 * 11 10 8 13 13 C 1.50700 * 115.54754 * 64.60525 * 12 11 10 14 14 H 1.07999 * 120.00124 * 266.41059 * 13 12 11 15 15 C 1.37875 * 119.99937 * 86.42048 * 13 12 11 16 16 N 1.31519 * 120.00274 * 178.57485 * 15 13 12 17 17 Si 1.86804 * 119.99931 * 358.57008 * 15 13 12 18 18 H 1.48494 * 109.47089 * 90.67454 * 17 15 13 19 19 H 1.48504 * 109.46931 * 210.67389 * 17 15 13 20 20 H 1.48500 * 109.47038 * 330.67093 * 17 15 13 21 21 C 1.52998 * 117.49987 * 278.93733 * 12 11 10 22 22 C 1.52993 * 117.49818 * 210.27671 * 12 11 10 23 23 H 1.09002 * 109.47073 * 270.14085 * 1 2 3 24 24 H 1.09003 * 109.46946 * 30.13486 * 1 2 3 25 25 H 1.08994 * 109.47429 * 150.13540 * 1 2 3 26 26 H 1.07994 * 126.07444 * 0.04736 * 3 2 1 27 27 H 1.08005 * 125.50917 * 179.72185 * 4 3 2 28 28 H 1.08993 * 109.47489 * 295.45133 * 11 10 8 29 29 H 1.09001 * 109.47032 * 55.45252 * 11 10 8 30 30 H 0.97000 * 119.99975 * 179.97438 * 16 15 13 31 31 H 1.09001 * 117.49848 * 359.97438 * 21 12 11 32 32 H 1.08993 * 117.50031 * 145.01899 * 21 12 11 33 33 H 1.09004 * 117.50006 * 214.97939 * 22 12 11 34 34 H 1.09003 * 117.50388 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1235 0.0000 4 6 3.6224 0.6897 -0.0068 5 7 3.6297 -0.6599 -0.0053 6 1 4.4211 -1.2208 -0.0095 7 6 2.3280 -1.1091 0.0032 8 6 1.8943 -2.5083 0.0069 9 8 0.7131 -2.7785 0.1117 10 8 2.8050 -3.4970 -0.1056 11 6 2.2963 -4.8531 -0.2088 12 6 3.4605 -5.8182 -0.4415 13 6 4.4553 -5.9205 0.6859 14 1 5.3415 -5.3033 0.6817 15 6 4.2341 -6.8021 1.7226 16 7 5.1158 -6.9116 2.6922 17 14 2.6817 -7.8409 1.7501 18 1 2.9360 -9.1293 1.0568 19 1 2.2879 -8.1053 3.1573 20 1 1.5873 -7.1139 1.0580 21 6 3.9948 -5.9493 -1.8692 22 6 3.1767 -7.0855 -1.2504 23 1 -0.3633 0.0025 1.0277 24 1 -0.3633 0.8888 -0.5159 25 1 -0.3634 -0.8911 -0.5117 26 1 2.0159 2.1540 0.0007 27 1 4.4982 1.3216 -0.0128 28 1 1.7825 -5.1197 0.7147 29 1 1.5988 -4.9170 -1.0440 30 1 4.9600 -7.5316 3.4217 31 1 3.5166 -5.3484 -2.6427 32 1 5.0657 -6.1099 -1.9930 33 1 3.7097 -7.9932 -0.9674 34 1 2.1604 -7.2320 -1.6164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118460774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:24 Heat of formation + Delta-G solvation = -39.756544 kcal Electronic energy + Delta-G solvation = -17951.168716 eV Core-core repulsion = 15042.901639 eV Total energy + Delta-G solvation = -2908.267077 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.36938 -40.87423 -38.79237 -37.05601 -34.29452 -33.54100 -31.04181 -29.08379 -27.98536 -27.21334 -23.92473 -23.33654 -21.78266 -21.10642 -20.11308 -19.56315 -18.65828 -17.69133 -17.53880 -16.80737 -16.36277 -15.53365 -15.38963 -14.83977 -14.65251 -14.54097 -14.10177 -13.93378 -13.82193 -13.63386 -13.25390 -13.10526 -12.80693 -12.62713 -12.29869 -12.08677 -11.75866 -11.73808 -11.46091 -10.97474 -10.69457 -10.43944 -9.74257 -9.26330 -8.34604 -6.41685 0.22671 1.29838 1.34345 1.43741 1.65239 1.76742 2.07253 2.29549 2.31279 2.98715 3.14415 3.79757 3.95044 4.16059 4.18568 4.21024 4.26942 4.32775 4.36601 4.57841 4.78210 4.85246 4.87006 4.96495 4.97171 5.14084 5.15767 5.34664 5.40659 5.54393 5.61695 5.75045 5.96278 6.24858 6.52116 6.64905 6.76030 7.27342 8.80819 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.006039 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.965925 B = 4635.080839 C = 4743.718692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.075 4.075 3 C -0.226 4.226 4 C 0.059 3.941 5 N -0.525 5.525 6 H 0.430 0.570 7 C -0.089 4.089 8 C 0.520 3.480 9 O -0.537 6.537 10 O -0.350 6.350 11 C 0.116 3.884 12 C -0.040 4.040 13 C -0.481 4.481 14 H 0.036 0.964 15 C 0.022 3.978 16 N -0.945 5.945 17 Si 0.931 3.069 18 H -0.257 1.257 19 H -0.297 1.297 20 H -0.243 1.243 21 C -0.153 4.153 22 C -0.178 4.178 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.175 0.825 27 H 0.219 0.781 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.266 0.734 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 14.039 -8.191 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.249 4.249 4 C -0.080 4.080 5 N -0.120 5.120 6 H 0.269 0.731 7 C -0.199 4.199 8 C 0.369 3.631 9 O -0.429 6.429 10 O -0.266 6.266 11 C 0.043 3.957 12 C -0.041 4.041 13 C -0.518 4.518 14 H 0.054 0.946 15 C -0.175 4.175 16 N -0.584 5.584 17 Si 0.756 3.244 18 H -0.182 1.182 19 H -0.224 1.224 20 H -0.167 1.167 21 C -0.190 4.190 22 C -0.215 4.215 23 H 0.087 0.913 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.193 0.807 27 H 0.236 0.764 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.712 13.650 -7.995 16.819 hybrid contribution 0.008 -1.228 0.686 1.407 sum -5.705 12.422 -7.308 15.500 Atomic orbital electron populations 1.20361 0.88797 1.02988 1.02465 1.20378 0.96589 0.91013 1.00445 1.21154 0.91492 0.99242 1.13044 1.22817 1.01149 0.82239 1.01777 1.42032 1.06897 1.08382 1.54685 0.73077 1.19212 0.86232 0.89350 1.25102 1.20443 0.84043 0.85816 0.72844 1.90783 1.18786 1.84496 1.48857 1.86616 1.39634 1.17426 1.82964 1.22825 0.95706 0.76988 1.00218 1.19229 0.96184 0.95814 0.92834 1.20320 1.05498 1.21451 1.04551 0.94572 1.25796 0.99220 0.97936 0.94596 1.70021 1.37460 1.38514 1.12445 0.86003 0.81114 0.80272 0.77025 1.18167 1.22378 1.16658 1.22870 0.99601 1.01336 0.95222 1.23084 1.01268 0.92877 1.04309 0.91276 0.88938 0.92723 0.80716 0.76442 0.93539 0.91345 0.92461 0.87944 0.89503 0.89499 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.23 9.78 71.23 0.70 -1.53 16 2 C -0.08 -2.08 6.21 -19.55 -0.12 -2.20 16 3 C -0.23 -4.52 10.76 22.01 0.24 -4.28 16 4 C 0.06 1.06 11.87 83.57 0.99 2.05 16 5 N -0.53 -13.40 6.07 -184.05 -1.12 -14.52 16 6 H 0.43 10.38 8.96 -92.71 -0.83 9.54 16 7 C -0.09 -2.91 7.10 40.32 0.29 -2.63 16 8 C 0.52 20.94 7.92 69.97 0.55 21.50 16 9 O -0.54 -23.23 14.68 19.43 0.29 -22.95 16 10 O -0.35 -15.23 10.16 -58.04 -0.59 -15.82 16 11 C 0.12 5.14 4.94 71.98 0.36 5.50 16 12 C -0.04 -1.82 1.06 -52.93 -0.06 -1.88 16 13 C -0.48 -27.23 9.35 25.60 0.24 -26.99 16 14 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 15 C 0.02 1.29 5.47 84.65 0.46 1.76 16 16 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 17 Si 0.93 44.40 24.90 68.60 1.71 46.11 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.24 -10.83 5.72 99.48 0.57 -10.27 16 21 C -0.15 -5.83 9.96 30.62 0.30 -5.53 16 22 C -0.18 -6.96 7.64 30.62 0.23 -6.73 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.61 6.63 -2.39 -0.02 1.60 16 26 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 27 H 0.22 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.05 2.22 6.56 -2.39 -0.02 2.21 16 29 H 0.07 2.69 8.06 -2.39 -0.02 2.68 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 31 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.09 3.54 7.32 -2.38 -0.02 3.52 16 34 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -72.07 292.50 4.92 -67.16 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.15 Total: 19.53 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.18 Total: -20.97 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -0.82 Total: -73.05 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.30 Total: -38.77 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.71 Total: 46.11 kcal Total: -72.07 4.92 -67.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118460774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.399 kcal (2) G-P(sol) polarization free energy of solvation -72.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds