Wall clock time and date at job start Sun Mar 29 2020 22:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99960 * 2 1 4 4 H 1.48491 * 109.47198 * 274.99751 * 3 2 1 5 5 H 1.48500 * 109.46778 * 35.00013 * 3 2 1 6 6 H 1.48502 * 109.46979 * 154.99571 * 3 2 1 7 7 C 1.37874 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00232 * 186.55533 * 7 2 1 9 9 C 1.50700 * 120.00065 * 6.55394 * 7 2 1 10 10 C 1.52999 * 115.54959 * 177.78731 * 9 7 2 11 11 N 1.46902 * 109.47493 * 34.41700 * 10 9 7 12 12 C 1.46895 * 111.00058 * 190.00164 * 11 10 9 13 13 C 1.53000 * 109.47105 * 71.50231 * 12 11 10 14 14 C 1.53001 * 117.49834 * 244.85882 * 13 12 11 15 15 C 1.53008 * 117.49866 * 176.20136 * 13 12 11 16 16 C 1.46898 * 110.99747 * 66.04280 * 11 10 9 17 17 C 1.53786 * 113.60820 * 171.21421 * 16 11 10 18 18 C 1.53781 * 87.08000 * 140.06996 * 17 16 11 19 19 C 1.53778 * 113.69320 * 268.74405 * 16 11 10 20 20 C 1.53001 * 117.49671 * 323.45230 * 9 7 2 21 21 C 1.53003 * 117.49924 * 32.11266 * 9 7 2 22 22 H 0.97002 * 120.00021 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47036 * 274.41589 * 10 9 7 24 24 H 1.09005 * 109.47083 * 154.41794 * 10 9 7 25 25 H 1.09002 * 109.47132 * 191.49951 * 12 11 10 26 26 H 1.08993 * 109.47351 * 311.50417 * 12 11 10 27 27 H 1.08995 * 115.55283 * 30.53658 * 13 12 11 28 28 H 1.08993 * 117.49859 * 0.02562 * 14 13 12 29 29 H 1.09003 * 117.49484 * 145.02561 * 14 13 12 30 30 H 1.08997 * 117.50151 * 214.97969 * 15 13 12 31 31 H 1.09000 * 117.49352 * 359.97438 * 15 13 12 32 32 H 1.08999 * 112.84855 * 40.02148 * 16 11 10 33 33 H 1.08996 * 113.61904 * 25.52104 * 17 16 11 34 34 H 1.09008 * 113.68833 * 254.62407 * 17 16 11 35 35 H 1.09001 * 113.61999 * 89.11189 * 18 17 16 36 36 H 1.08997 * 113.61706 * 220.02043 * 18 17 16 37 37 H 1.09002 * 113.60857 * 105.46319 * 19 16 11 38 38 H 1.08998 * 113.61804 * 334.56279 * 19 16 11 39 39 H 1.08997 * 117.49832 * 214.99654 * 20 9 7 40 40 H 1.09000 * 117.50247 * 0.02620 * 20 9 7 41 41 H 1.09002 * 117.49382 * 359.97438 * 21 9 7 42 42 H 1.09000 * 117.49696 * 144.97232 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0792 -1.1972 0.1062 9 6 1.2584 -2.4948 -0.1501 10 6 2.1276 -3.7533 -0.1901 11 7 3.2919 -3.5724 0.6873 12 6 4.2677 -4.6537 0.4966 13 6 4.9555 -4.4867 -0.8598 14 6 4.7188 -5.5735 -1.9105 15 6 6.0757 -5.4686 -1.2096 16 6 2.8808 -3.4762 2.0943 17 6 4.0584 -3.5008 3.0830 18 6 3.3064 -2.4245 3.8836 19 6 2.6186 -2.0356 2.5643 20 6 -0.1124 -2.6041 0.5207 21 6 -0.0123 -2.4864 -1.0022 22 1 -0.4850 0.8401 0.0004 23 1 2.4660 -3.9288 -1.2113 24 1 1.5446 -4.6086 0.1515 25 1 5.0143 -4.6135 1.2899 26 1 3.7555 -5.6152 0.5282 27 1 5.0580 -3.4602 -1.2117 28 1 4.0728 -6.4071 -1.6355 29 1 4.6660 -5.2619 -2.9537 30 1 6.9148 -5.0881 -1.7920 31 1 6.3228 -6.2332 -0.4731 32 1 2.0812 -4.1714 2.3501 33 1 4.9967 -3.1496 2.6536 34 1 4.1640 -4.4464 3.6149 35 1 2.6231 -2.8320 4.6286 36 1 3.9549 -1.6453 4.2840 37 1 1.5606 -1.7989 2.6767 38 1 3.1632 -1.2839 1.9930 39 1 -0.3950 -3.5725 0.9334 40 1 -0.4747 -1.7350 1.0698 41 1 -0.3088 -1.5399 -1.4543 42 1 -0.2288 -3.3773 -1.5918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602820317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:13 Heat of formation + Delta-G solvation = 87.762662 kcal Electronic energy + Delta-G solvation = -19573.641116 eV Core-core repulsion = 16942.569876 eV Total energy + Delta-G solvation = -2631.071240 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.08063 -37.03325 -36.23713 -33.56005 -31.32345 -27.43965 -25.57509 -25.10567 -24.47420 -22.19263 -21.90736 -20.56908 -19.90546 -18.83493 -18.58727 -16.02781 -15.65168 -15.18900 -14.83410 -14.56318 -13.93112 -13.58698 -13.27465 -13.09069 -12.30426 -12.03240 -11.79895 -11.60409 -11.36785 -11.26802 -10.96175 -10.88982 -10.83259 -10.53313 -10.42122 -10.08413 -9.90563 -9.72066 -9.68959 -9.61330 -9.36294 -9.26670 -8.56802 -8.20821 -7.88393 -7.41202 -5.80581 -3.77747 3.36385 3.44701 3.47732 4.02116 4.50815 4.55517 5.05927 5.13050 5.19574 5.25143 5.32981 5.36802 5.56877 5.72502 5.76156 5.79026 5.90348 5.95982 6.05840 6.11202 6.14744 6.19335 6.27468 6.37119 6.39279 6.46058 6.53986 6.61980 6.68957 6.84326 6.98754 7.13978 7.18959 7.30467 7.40028 7.46194 7.77967 8.02107 8.04151 8.21167 8.33206 8.74532 9.19160 9.72244 11.16610 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.008622 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.996738 B = 3246.834442 C = 3604.141455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.050 3.950 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.436 4.436 8 H 0.077 0.923 9 C 0.029 3.971 10 C 0.103 3.897 11 N -0.503 5.503 12 C 0.081 3.919 13 C -0.133 4.133 14 C -0.185 4.185 15 C -0.186 4.186 16 C 0.072 3.928 17 C -0.137 4.137 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.191 4.191 21 C -0.193 4.193 22 H 0.254 0.746 23 H 0.061 0.939 24 H 0.006 0.994 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.032 0.968 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -8.216 2.322 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.149 4.149 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.473 4.473 8 H 0.095 0.905 9 C 0.028 3.972 10 C -0.024 4.024 11 N -0.226 5.226 12 C -0.047 4.047 13 C -0.151 4.151 14 C -0.222 4.222 15 C -0.223 4.223 16 C -0.037 4.037 17 C -0.175 4.175 18 C -0.197 4.197 19 C -0.130 4.130 20 C -0.229 4.229 21 C -0.232 4.232 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.024 0.976 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.050 0.950 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.883 -7.637 2.204 11.195 hybrid contribution -0.225 -0.015 0.074 0.238 sum 7.658 -7.652 2.278 11.063 Atomic orbital electron populations 1.70030 1.05706 1.25400 1.51452 1.25008 0.94791 0.98822 0.96300 0.86680 0.80065 0.84164 0.77691 1.21206 1.21748 1.19804 1.20647 0.93848 0.87798 1.45034 0.90522 1.18941 0.85304 0.92912 0.99995 1.21639 0.89711 0.95699 0.95354 1.62088 1.13590 1.41981 1.04892 1.21661 0.95284 0.92524 0.95209 1.22356 1.00338 0.96355 0.96089 1.23005 0.99273 1.01823 0.98129 1.22923 0.92373 1.03192 1.03843 1.22954 0.95296 0.98970 0.86447 1.23079 0.98451 0.98307 0.97673 1.22914 0.99849 0.98715 0.98178 1.22996 1.01490 0.96419 0.92133 1.22934 1.05819 0.98641 0.95486 1.22759 1.07271 0.99869 0.93288 0.93587 0.92039 0.97589 0.90817 0.96098 0.86694 0.89414 0.89134 0.89180 0.89400 0.93156 0.89803 0.93089 0.91483 0.92180 0.91374 0.87739 0.94994 0.86975 0.87649 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 8.64 55.43 0.48 -23.79 16 2 C 0.05 1.32 5.25 -17.82 -0.09 1.23 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.44 -11.11 5.76 -34.44 -0.20 -11.31 16 8 H 0.08 1.99 6.17 -52.49 -0.32 1.66 16 9 C 0.03 0.70 1.59 -155.66 -0.25 0.45 16 10 C 0.10 2.15 4.92 -3.82 -0.02 2.13 16 11 N -0.50 -9.43 3.46 -225.68 -0.78 -10.21 16 12 C 0.08 1.28 5.08 -3.83 -0.02 1.26 16 13 C -0.13 -1.96 4.97 -90.62 -0.45 -2.41 16 14 C -0.19 -2.43 10.13 -26.69 -0.27 -2.70 16 15 C -0.19 -2.24 10.26 -26.69 -0.27 -2.51 16 16 C 0.07 1.30 3.11 -66.90 -0.21 1.10 16 17 C -0.14 -2.10 6.26 -25.92 -0.16 -2.26 16 18 C -0.16 -2.51 8.08 -25.92 -0.21 -2.72 16 19 C -0.09 -1.82 5.38 -25.92 -0.14 -1.96 16 20 C -0.19 -4.70 9.07 -26.69 -0.24 -4.95 16 21 C -0.19 -4.82 9.38 -26.69 -0.25 -5.07 16 22 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.06 1.27 7.20 -51.93 -0.37 0.89 16 24 H 0.01 0.12 7.78 -51.93 -0.40 -0.28 16 25 H 0.07 1.08 6.04 -51.93 -0.31 0.76 16 26 H 0.02 0.33 7.80 -51.93 -0.40 -0.08 16 27 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 28 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.96 7.97 -51.93 -0.41 0.55 16 33 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.50 7.89 -51.93 -0.41 1.09 16 38 H 0.10 2.29 5.99 -51.93 -0.31 1.98 16 39 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 40 H 0.11 3.05 6.22 -51.93 -0.32 2.72 16 41 H 0.11 2.89 6.35 -51.93 -0.33 2.56 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -26.03 318.63 -10.65 -36.69 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.35 Total: 6.31 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.78 Total: -29.72 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.30 Total: -34.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.03 -10.65 -36.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602820317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.448 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds