Wall clock time and date at job start Sun Mar 29 2020 22:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99960 * 2 1 4 4 H 1.48491 * 109.47198 * 274.99751 * 3 2 1 5 5 H 1.48500 * 109.46778 * 35.00013 * 3 2 1 6 6 H 1.48502 * 109.46979 * 154.99571 * 3 2 1 7 7 C 1.37874 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00232 * 186.55533 * 7 2 1 9 9 C 1.50700 * 120.00065 * 6.55394 * 7 2 1 10 10 C 1.52999 * 115.54959 * 177.78731 * 9 7 2 11 11 N 1.46902 * 109.47493 * 34.41700 * 10 9 7 12 12 C 1.46895 * 111.00058 * 190.00164 * 11 10 9 13 13 C 1.53000 * 109.47105 * 71.50231 * 12 11 10 14 14 C 1.53001 * 117.49834 * 244.85882 * 13 12 11 15 15 C 1.53008 * 117.49866 * 176.20136 * 13 12 11 16 16 C 1.46898 * 110.99747 * 66.04280 * 11 10 9 17 17 C 1.53786 * 113.60820 * 171.21421 * 16 11 10 18 18 C 1.53781 * 87.08000 * 140.06996 * 17 16 11 19 19 C 1.53778 * 113.69320 * 268.74405 * 16 11 10 20 20 C 1.53001 * 117.49671 * 323.45230 * 9 7 2 21 21 C 1.53003 * 117.49924 * 32.11266 * 9 7 2 22 22 H 0.97002 * 120.00021 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47036 * 274.41589 * 10 9 7 24 24 H 1.09005 * 109.47083 * 154.41794 * 10 9 7 25 25 H 1.09002 * 109.47132 * 191.49951 * 12 11 10 26 26 H 1.08993 * 109.47351 * 311.50417 * 12 11 10 27 27 H 1.08995 * 115.55283 * 30.53658 * 13 12 11 28 28 H 1.08993 * 117.49859 * 0.02562 * 14 13 12 29 29 H 1.09003 * 117.49484 * 145.02561 * 14 13 12 30 30 H 1.08997 * 117.50151 * 214.97969 * 15 13 12 31 31 H 1.09000 * 117.49352 * 359.97438 * 15 13 12 32 32 H 1.08999 * 112.84855 * 40.02148 * 16 11 10 33 33 H 1.08996 * 113.61904 * 25.52104 * 17 16 11 34 34 H 1.09008 * 113.68833 * 254.62407 * 17 16 11 35 35 H 1.09001 * 113.61999 * 89.11189 * 18 17 16 36 36 H 1.08997 * 113.61706 * 220.02043 * 18 17 16 37 37 H 1.09002 * 113.60857 * 105.46319 * 19 16 11 38 38 H 1.08998 * 113.61804 * 334.56279 * 19 16 11 39 39 H 1.08997 * 117.49832 * 214.99654 * 20 9 7 40 40 H 1.09000 * 117.50247 * 0.02620 * 20 9 7 41 41 H 1.09002 * 117.49382 * 359.97438 * 21 9 7 42 42 H 1.09000 * 117.49696 * 144.97232 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0792 -1.1972 0.1062 9 6 1.2584 -2.4948 -0.1501 10 6 2.1276 -3.7533 -0.1901 11 7 3.2919 -3.5724 0.6873 12 6 4.2677 -4.6537 0.4966 13 6 4.9555 -4.4867 -0.8598 14 6 4.7188 -5.5735 -1.9105 15 6 6.0757 -5.4686 -1.2096 16 6 2.8808 -3.4762 2.0943 17 6 4.0584 -3.5008 3.0830 18 6 3.3064 -2.4245 3.8836 19 6 2.6186 -2.0356 2.5643 20 6 -0.1124 -2.6041 0.5207 21 6 -0.0123 -2.4864 -1.0022 22 1 -0.4850 0.8401 0.0004 23 1 2.4660 -3.9288 -1.2113 24 1 1.5446 -4.6086 0.1515 25 1 5.0143 -4.6135 1.2899 26 1 3.7555 -5.6152 0.5282 27 1 5.0580 -3.4602 -1.2117 28 1 4.0728 -6.4071 -1.6355 29 1 4.6660 -5.2619 -2.9537 30 1 6.9148 -5.0881 -1.7920 31 1 6.3228 -6.2332 -0.4731 32 1 2.0812 -4.1714 2.3501 33 1 4.9967 -3.1496 2.6536 34 1 4.1640 -4.4464 3.6149 35 1 2.6231 -2.8320 4.6286 36 1 3.9549 -1.6453 4.2840 37 1 1.5606 -1.7989 2.6767 38 1 3.1632 -1.2839 1.9930 39 1 -0.3950 -3.5725 0.9334 40 1 -0.4747 -1.7350 1.0698 41 1 -0.3088 -1.5399 -1.4543 42 1 -0.2288 -3.3773 -1.5918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602820317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:13 Heat of formation + Delta-G solvation = 76.530813 kcal Electronic energy + Delta-G solvation = -19574.128165 eV Core-core repulsion = 16942.569876 eV Total energy + Delta-G solvation = -2631.558290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52891 -38.16477 -38.06795 -35.03034 -33.32592 -28.99602 -27.31362 -26.68038 -25.92220 -23.37046 -23.12084 -22.58262 -21.08904 -20.73332 -20.01787 -17.83943 -17.15473 -16.69905 -16.29257 -16.18894 -15.34564 -15.13694 -14.74679 -14.63392 -13.92180 -13.55518 -13.35182 -13.05303 -12.86576 -12.84728 -12.52708 -12.42429 -12.29504 -12.10135 -12.08720 -11.89179 -11.47941 -11.30699 -11.14627 -11.03822 -10.86206 -10.70088 -10.43961 -10.17238 -9.87949 -8.89154 -7.85401 -5.86096 1.43828 1.47972 1.55910 2.53041 2.95068 3.14204 3.26743 3.85853 3.97143 4.00375 4.03865 4.12562 4.19972 4.27969 4.38741 4.51310 4.54316 4.66040 4.71631 4.83423 4.84079 4.92102 4.93887 4.95343 4.97661 5.10106 5.14425 5.19170 5.21636 5.32528 5.33436 5.47830 5.48319 5.56448 5.65893 5.78107 5.82274 6.08681 6.26438 6.47830 6.60010 6.74919 7.14051 7.65559 9.10255 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.008622 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.996738 B = 3246.834442 C = 3604.141455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.006 3.994 3 Si 0.937 3.063 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.429 4.429 8 H 0.072 0.928 9 C 0.029 3.971 10 C 0.114 3.886 11 N -0.515 5.515 12 C 0.086 3.914 13 C -0.156 4.156 14 C -0.187 4.187 15 C -0.160 4.160 16 C 0.067 3.933 17 C -0.118 4.118 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.186 4.186 21 C -0.199 4.199 22 H 0.249 0.751 23 H 0.062 0.938 24 H 0.008 0.992 25 H 0.089 0.911 26 H 0.026 0.974 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -9.846 2.962 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.765 3.235 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.090 0.910 9 C 0.028 3.972 10 C -0.013 4.013 11 N -0.238 5.238 12 C -0.041 4.041 13 C -0.175 4.175 14 C -0.224 4.224 15 C -0.198 4.198 16 C -0.041 4.041 17 C -0.155 4.155 18 C -0.183 4.183 19 C -0.140 4.140 20 C -0.224 4.224 21 C -0.237 4.237 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.026 0.974 25 H 0.107 0.893 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.077 -9.274 2.844 13.987 hybrid contribution -0.923 0.496 -0.137 1.056 sum 9.154 -8.779 2.707 12.969 Atomic orbital electron populations 1.70181 1.06725 1.25467 1.52678 1.25583 0.95380 1.01411 0.96666 0.85852 0.79275 0.81086 0.77252 1.21421 1.22167 1.19028 1.20755 0.93590 0.88539 1.43839 0.90993 1.19092 0.85343 0.94001 0.98722 1.21417 0.90076 0.93788 0.96061 1.62009 1.13081 1.43879 1.04822 1.21694 0.94635 0.91497 0.96286 1.22223 1.03112 0.95885 0.96241 1.23065 1.00462 1.01069 0.97853 1.23006 0.91820 1.01692 1.03235 1.22981 0.96767 0.97458 0.86929 1.22958 0.97123 0.99299 0.96156 1.22860 0.99692 0.99167 0.96620 1.22833 0.99186 0.96915 0.95037 1.22720 1.06617 0.98061 0.95019 1.22668 1.08366 0.99301 0.93412 0.94150 0.91969 0.97436 0.89318 0.95577 0.89052 0.89020 0.89041 0.87992 0.87744 0.93928 0.89422 0.90368 0.90150 0.90999 0.94941 0.90422 0.93604 0.89798 0.90435 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.54 8.64 21.45 0.19 -51.35 16 2 C 0.01 0.34 5.25 84.65 0.44 0.78 16 3 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.43 -22.30 5.76 25.60 0.15 -22.16 16 8 H 0.07 3.77 6.17 -2.91 -0.02 3.76 16 9 C 0.03 1.41 1.59 -52.93 -0.08 1.33 16 10 C 0.11 4.69 4.92 86.30 0.42 5.11 16 11 N -0.51 -18.72 3.46 -867.91 -3.00 -21.72 16 12 C 0.09 2.50 5.08 86.30 0.44 2.93 16 13 C -0.16 -4.29 4.97 -10.79 -0.05 -4.34 16 14 C -0.19 -4.49 10.13 30.62 0.31 -4.18 16 15 C -0.16 -3.33 10.26 30.62 0.31 -3.01 16 16 C 0.07 2.35 3.11 45.44 0.14 2.49 16 17 C -0.12 -3.23 6.26 31.12 0.19 -3.04 16 18 C -0.15 -4.30 8.08 31.12 0.25 -4.05 16 19 C -0.10 -3.99 5.38 31.12 0.17 -3.82 16 20 C -0.19 -9.36 9.07 30.62 0.28 -9.08 16 21 C -0.20 -10.06 9.38 30.62 0.29 -9.77 16 22 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 23 H 0.06 2.52 7.20 -2.39 -0.02 2.50 16 24 H 0.01 0.31 7.78 -2.38 -0.02 0.29 16 25 H 0.09 2.28 6.04 -2.39 -0.01 2.27 16 26 H 0.03 0.74 7.80 -2.39 -0.02 0.72 16 27 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 33 H 0.09 2.38 7.48 -2.39 -0.02 2.36 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.03 1.46 7.89 -2.39 -0.02 1.44 16 38 H 0.08 3.45 5.99 -2.39 -0.01 3.44 16 39 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 40 H 0.08 4.74 6.22 -2.39 -0.01 4.73 16 41 H 0.08 4.38 6.35 -2.39 -0.02 4.36 16 42 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -56.83 318.63 3.44 -53.39 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.97 Total: 24.59 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 3.26 Total: -50.81 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -2.81 Total: -73.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -56.83 3.44 -53.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602820317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.920 kcal (2) G-P(sol) polarization free energy of solvation -56.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds