Wall clock time and date at job start Sun Mar 29 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99935 * 2 1 4 4 C 1.39195 * 120.00335 * 179.97438 * 2 1 3 5 5 C 1.39689 * 120.82751 * 174.60815 * 4 2 1 6 6 C 1.37731 * 119.23461 * 180.25834 * 5 4 2 7 7 N 1.32086 * 120.93402 * 359.73856 * 6 5 4 8 8 C 1.32519 * 121.80593 * 0.02562 * 7 6 5 9 9 N 1.39036 * 119.66692 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99935 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47029 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47145 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99939 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00040 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47462 * 60.00063 * 17 15 13 19 19 H 1.48502 * 109.47416 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47235 * 299.99555 * 17 15 13 21 21 C 1.38823 * 120.66780 * 359.97438 * 8 7 6 22 22 H 1.08996 * 109.46965 * 185.05522 * 1 2 3 23 23 H 1.09005 * 109.47261 * 305.05644 * 1 2 3 24 24 H 1.08995 * 109.47232 * 65.05153 * 1 2 3 25 25 H 1.09000 * 109.46830 * 269.99677 * 3 2 1 26 26 H 1.08992 * 109.47215 * 30.00123 * 3 2 1 27 27 H 1.09004 * 109.47084 * 150.00191 * 3 2 1 28 28 H 1.08001 * 120.38689 * 0.02562 * 5 4 2 29 29 H 1.07996 * 119.53476 * 179.76626 * 6 5 4 30 30 H 0.97000 * 119.99960 * 359.97284 * 9 8 7 31 31 H 1.08997 * 109.47096 * 300.00239 * 10 9 8 32 32 H 1.09005 * 109.47037 * 59.99734 * 10 9 8 33 33 H 1.09001 * 109.47035 * 299.99791 * 11 10 9 34 34 H 1.08997 * 109.46976 * 60.00737 * 11 10 9 35 35 H 1.08997 * 109.46984 * 300.00539 * 12 11 10 36 36 H 1.09005 * 109.47051 * 59.99975 * 12 11 10 37 37 H 0.97000 * 119.99762 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.50178 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2054 0.0005 5 6 3.5532 -1.2282 -0.1122 6 6 4.2082 -2.4398 -0.1134 7 7 3.5391 -3.5735 -0.0047 8 6 2.2190 -3.5973 0.1090 9 7 1.5598 -4.8163 0.2213 10 6 0.1007 -4.8510 0.3480 11 6 -0.3675 -6.3037 0.4539 12 6 -1.8914 -6.3401 0.5856 13 6 -2.3526 -7.7710 0.6906 14 1 -1.6310 -8.5740 0.6655 15 6 -3.6958 -8.0548 0.8176 16 7 -4.5746 -7.0767 0.8477 17 14 -4.2674 -9.8283 0.9485 18 1 -3.6527 -10.4596 2.1439 19 1 -5.7465 -9.8636 1.0762 20 1 -3.8574 -10.5717 -0.2699 21 6 1.4877 -2.4173 0.1182 22 1 -0.3633 -1.0236 0.0906 23 1 -0.3634 0.5903 0.8413 24 1 -0.3633 0.4334 -0.9317 25 1 2.3792 1.5834 -1.0277 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.1092 -0.3066 -0.2011 29 1 5.2841 -2.4633 -0.2041 30 1 2.0660 -5.6437 0.2158 31 1 -0.1994 -4.3059 1.2429 32 1 -0.3512 -4.3870 -0.5287 33 1 -0.0675 -6.8484 -0.4413 34 1 0.0843 -6.7681 1.3304 35 1 -2.1919 -5.7952 1.4805 36 1 -2.3430 -5.8758 -0.2912 37 1 -5.5196 -7.2764 0.9374 38 1 0.4119 -2.4398 0.2106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:07 Heat of formation + Delta-G solvation = 36.463761 kcal Electronic energy + Delta-G solvation = -17365.541380 eV Core-core repulsion = 14628.705309 eV Total energy + Delta-G solvation = -2736.836071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12705 -37.25809 -35.92901 -33.54296 -31.58950 -30.99617 -29.65743 -28.09687 -26.24413 -25.34774 -23.45426 -21.88937 -21.08320 -20.20197 -17.69101 -16.83128 -16.26208 -15.64273 -15.31567 -14.84425 -14.80804 -14.75990 -14.41565 -13.89479 -13.59385 -13.53883 -12.75699 -12.50228 -12.28349 -12.16197 -11.97272 -11.77507 -11.23413 -10.92845 -10.67767 -10.61560 -10.60740 -9.98460 -9.58017 -9.49447 -9.20206 -9.14550 -8.38292 -7.68709 -7.43533 -6.03685 -4.06274 1.61384 1.86659 2.95679 3.32088 3.36380 3.38767 3.55356 4.22119 4.43855 4.77394 4.80281 5.09892 5.11560 5.26759 5.32436 5.39354 5.40156 5.44030 5.50368 5.62538 5.69335 5.72182 5.79558 6.05138 6.09014 6.23502 6.53184 6.58376 6.72345 6.96833 7.10499 7.25218 7.45899 7.60569 7.73314 7.94378 7.95030 8.36994 8.55721 8.99969 9.58039 11.07647 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033778 B = 0.003735 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.731195 B = 7494.744538 C = 8285.582814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.630 5.630 3 C 0.095 3.905 4 C 0.283 3.717 5 C -0.313 4.313 6 C 0.182 3.818 7 N -0.585 5.585 8 C 0.439 3.561 9 N -0.720 5.720 10 C 0.126 3.874 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.320 4.320 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.403 0.597 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.245 15.803 -1.756 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.342 5.342 3 C -0.048 4.048 4 C 0.173 3.827 5 C -0.341 4.341 6 C 0.024 3.976 7 N -0.307 5.307 8 C 0.203 3.797 9 N -0.350 5.350 10 C 0.002 3.998 11 C -0.159 4.159 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.351 4.351 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.166 0.834 30 H 0.238 0.762 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.130 15.227 -1.720 20.180 hybrid contribution -0.758 -0.345 0.067 0.835 sum 12.372 14.882 -1.653 19.424 Atomic orbital electron populations 1.21756 0.79142 1.03759 1.01021 1.46234 1.05315 1.03150 1.79480 1.21607 0.97222 0.84813 1.01157 1.17737 0.91033 0.85375 0.88591 1.21231 0.92675 0.99700 1.20531 1.22011 0.98981 0.86449 0.90200 1.67219 1.07136 1.30903 1.25429 1.18107 0.87881 0.86108 0.87571 1.44844 1.07067 1.04828 1.78212 1.21648 0.77459 1.00122 1.00566 1.21869 1.00805 0.92094 1.01121 1.19020 0.87459 0.97337 0.97401 1.21180 0.92114 0.92438 1.50367 0.92653 1.25017 0.96901 0.97231 0.95255 1.69950 1.01786 1.31370 1.50338 0.86634 0.77472 0.85081 0.78681 1.20215 1.21271 1.20211 1.20833 1.00829 0.90530 1.22872 0.89900 0.92459 0.92811 0.93398 0.91586 0.91199 0.85866 0.83394 0.76208 0.92381 0.92393 0.92594 0.92592 0.96345 0.96342 0.92895 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.63 59.84 0.64 1.47 16 2 N -0.63 -6.94 3.40 -187.38 -0.64 -7.58 16 3 C 0.10 0.74 10.14 59.85 0.61 1.34 16 4 C 0.28 3.80 6.56 -83.64 -0.55 3.25 16 5 C -0.31 -3.83 9.22 -39.22 -0.36 -4.19 16 6 C 0.18 2.36 11.16 -17.63 -0.20 2.16 16 7 N -0.59 -9.29 10.39 -12.53 -0.13 -9.42 16 8 C 0.44 7.16 7.65 -155.00 -1.19 5.98 16 9 N -0.72 -11.64 5.73 -60.47 -0.35 -11.98 16 10 C 0.13 2.14 4.89 -4.04 -0.02 2.12 16 11 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 12 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.32 -4.84 8.58 -39.03 -0.34 -5.18 16 22 H 0.08 0.88 5.39 -51.93 -0.28 0.60 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.40 8.07 -51.93 -0.42 -0.01 16 27 H 0.07 0.50 6.49 -51.93 -0.34 0.17 16 28 H 0.12 1.19 6.42 -52.49 -0.34 0.85 16 29 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.40 6.24 8.60 -40.82 -0.35 5.89 16 31 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 32 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.13 1.93 4.50 -52.49 -0.24 1.69 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -31.41 313.73 -8.47 -39.88 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.71 Total: 2.18 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.09 Total: -8.48 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.38 Total: -54.80 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.41 -8.47 -39.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.345 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds