Wall clock time and date at job start Sun Mar 29 2020 22:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99935 * 2 1 4 4 C 1.39195 * 120.00335 * 179.97438 * 2 1 3 5 5 C 1.39689 * 120.82751 * 174.60815 * 4 2 1 6 6 C 1.37731 * 119.23461 * 180.25834 * 5 4 2 7 7 N 1.32086 * 120.93402 * 359.73856 * 6 5 4 8 8 C 1.32519 * 121.80593 * 0.02562 * 7 6 5 9 9 N 1.39036 * 119.66692 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99935 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47029 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47145 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99939 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00040 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47462 * 60.00063 * 17 15 13 19 19 H 1.48502 * 109.47416 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47235 * 299.99555 * 17 15 13 21 21 C 1.38823 * 120.66780 * 359.97438 * 8 7 6 22 22 H 1.08996 * 109.46965 * 185.05522 * 1 2 3 23 23 H 1.09005 * 109.47261 * 305.05644 * 1 2 3 24 24 H 1.08995 * 109.47232 * 65.05153 * 1 2 3 25 25 H 1.09000 * 109.46830 * 269.99677 * 3 2 1 26 26 H 1.08992 * 109.47215 * 30.00123 * 3 2 1 27 27 H 1.09004 * 109.47084 * 150.00191 * 3 2 1 28 28 H 1.08001 * 120.38689 * 0.02562 * 5 4 2 29 29 H 1.07996 * 119.53476 * 179.76626 * 6 5 4 30 30 H 0.97000 * 119.99960 * 359.97284 * 9 8 7 31 31 H 1.08997 * 109.47096 * 300.00239 * 10 9 8 32 32 H 1.09005 * 109.47037 * 59.99734 * 10 9 8 33 33 H 1.09001 * 109.47035 * 299.99791 * 11 10 9 34 34 H 1.08997 * 109.46976 * 60.00737 * 11 10 9 35 35 H 1.08997 * 109.46984 * 300.00539 * 12 11 10 36 36 H 1.09005 * 109.47051 * 59.99975 * 12 11 10 37 37 H 0.97000 * 119.99762 * 180.02562 * 16 15 13 38 38 H 1.08001 * 120.50178 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2054 0.0005 5 6 3.5532 -1.2282 -0.1122 6 6 4.2082 -2.4398 -0.1134 7 7 3.5391 -3.5735 -0.0047 8 6 2.2190 -3.5973 0.1090 9 7 1.5598 -4.8163 0.2213 10 6 0.1007 -4.8510 0.3480 11 6 -0.3675 -6.3037 0.4539 12 6 -1.8914 -6.3401 0.5856 13 6 -2.3526 -7.7710 0.6906 14 1 -1.6310 -8.5740 0.6655 15 6 -3.6958 -8.0548 0.8176 16 7 -4.5746 -7.0767 0.8477 17 14 -4.2674 -9.8283 0.9485 18 1 -3.6527 -10.4596 2.1439 19 1 -5.7465 -9.8636 1.0762 20 1 -3.8574 -10.5717 -0.2699 21 6 1.4877 -2.4173 0.1182 22 1 -0.3633 -1.0236 0.0906 23 1 -0.3634 0.5903 0.8413 24 1 -0.3633 0.4334 -0.9317 25 1 2.3792 1.5834 -1.0277 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.1092 -0.3066 -0.2011 29 1 5.2841 -2.4633 -0.2041 30 1 2.0660 -5.6437 0.2158 31 1 -0.1994 -4.3059 1.2429 32 1 -0.3512 -4.3870 -0.5287 33 1 -0.0675 -6.8484 -0.4413 34 1 0.0843 -6.7681 1.3304 35 1 -2.1919 -5.7952 1.4805 36 1 -2.3430 -5.8758 -0.2912 37 1 -5.5196 -7.2764 0.9374 38 1 0.4119 -2.4398 0.2106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:06 Heat of formation + Delta-G solvation = 17.271830 kcal Electronic energy + Delta-G solvation = -17366.373605 eV Core-core repulsion = 14628.705309 eV Total energy + Delta-G solvation = -2737.668295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16780 -38.28138 -37.21495 -35.40635 -33.31837 -31.98107 -30.82632 -29.11740 -27.86392 -26.22624 -25.08236 -23.19079 -22.24337 -21.70860 -18.69793 -18.54590 -17.75270 -16.72157 -16.47401 -16.43340 -15.98878 -15.82084 -15.76253 -14.88167 -14.77997 -14.74596 -14.21157 -13.70021 -13.61071 -13.38756 -13.18312 -12.94123 -12.76233 -12.56869 -12.39714 -12.05922 -11.82283 -11.51169 -11.47613 -11.21682 -10.82508 -10.54772 -10.27943 -8.68234 -8.50461 -8.20418 -6.31105 0.56657 0.81086 1.41073 1.43636 1.51486 2.11698 2.33255 2.43768 3.13257 3.14901 3.83887 4.03909 4.14471 4.21136 4.25722 4.37034 4.42708 4.51004 4.54517 4.58654 4.72690 4.76512 4.88016 4.92989 4.94409 5.01160 5.10002 5.14762 5.23673 5.49483 5.65781 5.70950 5.83326 6.04338 6.23919 6.31036 6.46105 6.74865 6.85249 7.37980 7.45218 8.91209 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033778 B = 0.003735 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.731195 B = 7494.744538 C = 8285.582814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.089 3.911 4 C 0.275 3.725 5 C -0.307 4.307 6 C 0.173 3.827 7 N -0.609 5.609 8 C 0.419 3.581 9 N -0.723 5.723 10 C 0.145 3.855 11 C -0.104 4.104 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.268 1.268 21 C -0.340 4.340 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.181 0.819 30 H 0.404 0.596 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.059 0.941 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.264 0.736 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.491 16.541 -1.859 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.343 5.343 3 C -0.053 4.053 4 C 0.163 3.837 5 C -0.335 4.335 6 C 0.016 3.984 7 N -0.331 5.331 8 C 0.185 3.815 9 N -0.354 5.354 10 C 0.020 3.980 11 C -0.142 4.142 12 C -0.009 4.009 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.788 3.212 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.370 4.370 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.171 0.829 29 H 0.198 0.802 30 H 0.240 0.760 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.073 0.927 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.402 16.010 -1.827 21.612 hybrid contribution -1.109 -0.416 0.087 1.188 sum 13.293 15.595 -1.740 20.565 Atomic orbital electron populations 1.21850 0.78750 1.03169 1.02373 1.46530 1.05912 1.03442 1.78379 1.21841 0.97630 0.83640 1.02213 1.17963 0.91837 0.85758 0.88115 1.21553 0.92262 1.00701 1.18943 1.22616 1.00457 0.86008 0.89280 1.67225 1.06932 1.32503 1.26484 1.18266 0.88477 0.86123 0.88674 1.44629 1.06302 1.05269 1.79231 1.21266 0.78422 0.97928 1.00369 1.21587 0.97143 0.94130 1.01385 1.18903 0.90892 0.95781 0.95342 1.21652 0.92702 0.93786 1.50258 0.92155 1.25948 0.97097 1.01885 0.94761 1.70079 1.02147 1.33718 1.51188 0.85519 0.77019 0.79491 0.79132 1.19257 1.20817 1.19244 1.20915 1.00784 0.91230 1.24103 0.91567 0.90835 0.91581 0.92384 0.89758 0.90412 0.82906 0.80188 0.76045 0.92663 0.92655 0.92240 0.92239 0.98447 0.98436 0.92726 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 10.63 127.77 1.36 2.83 16 2 N -0.63 -12.74 3.40 -746.76 -2.54 -15.28 16 3 C 0.09 1.11 10.14 127.77 1.30 2.40 16 4 C 0.28 7.04 6.56 38.54 0.25 7.30 16 5 C -0.31 -6.79 9.22 22.50 0.21 -6.58 16 6 C 0.17 4.17 11.16 84.53 0.94 5.11 16 7 N -0.61 -18.91 10.39 -193.56 -2.01 -20.92 16 8 C 0.42 13.72 7.65 132.94 1.02 14.73 16 9 N -0.72 -23.69 5.73 -345.22 -1.98 -25.66 16 10 C 0.14 5.05 4.89 86.38 0.42 5.47 16 11 C -0.10 -4.21 5.27 30.59 0.16 -4.05 16 12 C 0.03 1.48 4.97 29.85 0.15 1.62 16 13 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 14 H 0.06 3.27 7.74 -2.92 -0.02 3.25 16 15 C 0.00 0.06 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 17 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 C -0.34 -10.31 8.58 22.62 0.19 -10.12 16 22 H 0.07 1.43 5.39 -2.39 -0.01 1.42 16 23 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.08 0.76 8.07 -2.39 -0.02 0.75 16 27 H 0.08 0.86 6.49 -2.38 -0.02 0.84 16 28 H 0.15 2.38 6.42 -2.91 -0.02 2.36 16 29 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.40 12.64 8.60 -92.71 -0.80 11.84 16 31 H 0.06 1.95 7.92 -2.39 -0.02 1.93 16 32 H 0.06 1.95 7.93 -2.38 -0.02 1.93 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 37 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.13 3.84 4.50 -2.91 -0.01 3.83 16 Total: -1.00 -67.55 313.73 2.74 -64.82 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.25 Total: 18.22 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 6.70 Total: -11.40 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.24 Total: -117.76 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.55 2.74 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.088 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds