Wall clock time and date at job start Sun Mar 29 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99702 * 2 1 4 4 C 1.53006 * 109.47089 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.46867 * 64.99917 * 4 3 2 6 6 C 1.34804 * 116.99925 * 179.97438 * 5 4 3 7 7 O 1.21526 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.47288 * 120.00213 * 180.02562 * 6 5 4 9 9 C 1.39296 * 120.28603 * 354.83939 * 8 6 5 10 10 C 1.38205 * 120.08627 * 180.27692 * 9 8 6 11 11 C 1.38842 * 120.68093 * 359.73704 * 10 9 8 12 12 C 1.37598 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.40703 * 119.88779 * 0.02562 * 12 11 10 14 14 C 1.40861 * 120.33435 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00819 * 145.73608 * 14 13 12 16 16 C 1.40300 * 119.99625 * 325.73972 * 14 13 12 17 17 N 1.30615 * 120.00178 * 339.67941 * 16 14 13 18 18 Si 1.86801 * 120.00058 * 159.68932 * 16 14 13 19 19 H 1.48493 * 109.47173 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.46636 * 299.99423 * 18 16 14 21 21 H 1.48494 * 109.47212 * 59.99337 * 18 16 14 22 22 H 1.08998 * 109.47450 * 60.00488 * 1 2 3 23 23 H 1.09009 * 109.47130 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47436 * 299.99656 * 1 2 3 25 25 H 1.09001 * 109.47186 * 60.00170 * 3 2 1 26 26 H 1.09001 * 109.47078 * 299.99670 * 3 2 1 27 27 H 1.08999 * 109.47037 * 305.00294 * 4 3 2 28 28 H 1.09000 * 109.47230 * 184.99759 * 4 3 2 29 29 H 1.08000 * 119.95653 * 0.02562 * 9 8 6 30 30 H 1.07997 * 119.65882 * 179.75950 * 10 9 8 31 31 H 1.07994 * 119.70815 * 180.02562 * 11 10 9 32 32 H 1.07997 * 120.05357 * 180.02562 * 12 11 10 33 33 H 0.97001 * 119.99911 * 355.29856 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9727 0.5696 -1.2398 6 6 5.2991 0.3901 -1.3995 7 8 6.0690 0.7387 -0.5263 8 6 5.8155 -0.2274 -2.6330 9 6 4.9354 -0.7256 -3.5909 10 6 5.4245 -1.3093 -4.7442 11 6 6.7919 -1.4024 -4.9661 12 6 7.6861 -0.9151 -4.0408 13 6 7.2147 -0.3170 -2.8577 14 6 8.1217 0.1845 -1.9038 15 1 7.8713 1.0652 -1.3311 16 6 9.3507 -0.4601 -1.6977 17 7 9.5057 -1.7037 -2.0657 18 14 10.7654 0.4602 -0.8969 19 1 11.9440 -0.4371 -0.7933 20 1 11.1153 1.6445 -1.7217 21 1 10.3612 0.9046 0.4611 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8507 0.5686 0.8427 28 1 3.9784 2.1767 0.0902 29 1 3.8695 -0.6592 -3.4303 30 1 4.7359 -1.6968 -5.4805 31 1 7.1568 -1.8613 -5.8730 32 1 8.7479 -0.9916 -4.2224 33 1 8.7524 -2.2026 -2.4185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:52 Heat of formation + Delta-G solvation = -122.200362 kcal Electronic energy + Delta-G solvation = -17906.564071 eV Core-core repulsion = 14897.003300 eV Total energy + Delta-G solvation = -3009.560771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43249 -37.94510 -37.28764 -35.26098 -33.94873 -30.77321 -29.83460 -29.35925 -26.39200 -25.38869 -23.35038 -21.99694 -21.01610 -19.82629 -18.01867 -16.86519 -16.69799 -16.00318 -15.48271 -15.10019 -14.88626 -14.57742 -14.15306 -13.88649 -13.17663 -12.81070 -12.69201 -12.28262 -12.13187 -11.85756 -11.44384 -11.22828 -11.12633 -10.95385 -10.72240 -10.40787 -10.21051 -9.93991 -9.76835 -9.69250 -9.12452 -8.85613 -7.83983 -7.66305 -7.25214 -4.55869 2.11962 2.73534 3.16740 3.27851 3.37363 3.54656 3.72831 3.83346 3.99284 4.56147 4.98273 5.16237 5.25376 5.28923 5.34135 5.38687 5.54738 5.64435 5.81475 6.01808 6.09505 6.23110 6.49637 6.74701 6.94188 7.09828 7.20679 7.34665 7.49197 7.58040 7.73737 7.82446 8.07350 8.15442 8.63017 8.74839 9.05840 9.95693 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.006410 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.596768 B = 4367.055206 C = 5356.972383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.065 3.935 4 C 0.070 3.930 5 O -0.362 6.362 6 C 0.504 3.496 7 O -0.517 6.517 8 C -0.254 4.254 9 C -0.022 4.022 10 C -0.262 4.262 11 C -0.070 4.070 12 C -0.202 4.202 13 C 0.122 3.878 14 C -0.466 4.466 15 H 0.104 0.896 16 C 0.032 3.968 17 N -0.785 5.785 18 Si 1.071 2.929 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.272 1.272 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.119 4.114 2.005 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.012 4.012 4 C -0.005 4.005 5 O -0.281 6.281 6 C 0.354 3.646 7 O -0.408 6.408 8 C -0.257 4.257 9 C -0.040 4.040 10 C -0.281 4.281 11 C -0.089 4.089 12 C -0.221 4.221 13 C 0.118 3.882 14 C -0.493 4.493 15 H 0.122 0.878 16 C -0.191 4.191 17 N -0.408 5.408 18 Si 0.894 3.106 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.197 1.197 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.199 3.857 2.729 9.463 hybrid contribution -1.987 0.333 -0.396 2.054 sum -10.186 4.190 2.333 11.259 Atomic orbital electron populations 1.22731 0.81380 1.02752 0.99681 1.88013 1.19348 1.27411 1.95328 1.22613 0.92334 0.85405 1.00825 1.22783 0.92150 0.98627 0.86939 1.86628 1.27408 1.74863 1.39240 1.21328 0.78762 0.76692 0.87776 1.90732 1.56854 1.49369 1.43842 1.18688 0.93769 1.18029 0.95180 1.20927 0.97643 0.92977 0.92464 1.20329 0.94753 1.12891 1.00123 1.20802 0.93561 0.97105 0.97407 1.21189 0.98431 1.07499 0.94949 1.17467 0.90059 0.88688 0.92026 1.21189 0.99681 1.11727 1.16670 0.87837 1.27316 1.01039 0.95765 0.94936 1.70384 1.37110 1.08347 1.24954 0.83546 0.74242 0.75697 0.77119 1.19780 1.19835 1.19742 0.94066 0.89669 0.94353 0.91617 0.92275 0.91057 0.90344 0.87719 0.88590 0.88642 0.87333 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.70 10.67 -38.80 -0.41 -6.11 16 3 C 0.06 0.85 6.33 37.16 0.24 1.09 16 4 C 0.07 1.17 5.86 37.16 0.22 1.39 16 5 O -0.36 -7.72 9.45 -43.56 -0.41 -8.13 16 6 C 0.50 12.52 7.85 34.41 0.27 12.79 16 7 O -0.52 -13.82 13.38 -19.28 -0.26 -14.08 16 8 C -0.25 -6.51 5.92 -104.39 -0.62 -7.13 16 9 C -0.02 -0.50 9.60 -39.20 -0.38 -0.87 16 10 C -0.26 -5.68 10.03 -39.37 -0.39 -6.08 16 11 C -0.07 -1.56 10.01 -39.59 -0.40 -1.95 16 12 C -0.20 -5.03 7.90 -38.88 -0.31 -5.34 16 13 C 0.12 3.28 5.16 -106.54 -0.55 2.73 16 14 C -0.47 -12.79 7.62 -37.81 -0.29 -13.07 16 15 H 0.10 2.93 5.99 -52.49 -0.31 2.62 16 16 C 0.03 0.83 5.01 -17.29 -0.09 0.74 16 17 N -0.79 -20.87 12.60 55.57 0.70 -20.17 16 18 Si 1.07 22.14 29.98 -169.99 -5.10 17.04 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 2.19 7.61 -52.49 -0.40 1.79 16 30 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.11 2.72 6.99 -52.49 -0.37 2.35 16 33 H 0.30 8.17 6.62 -40.82 -0.27 7.90 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -30.50 290.02 -6.24 -36.74 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.95 Total: 4.62 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.18 Total: -14.28 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.70 Total: -20.17 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.08 Total: -28.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.10 Total: 17.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.50 -6.24 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.462 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds