Wall clock time and date at job start Sun Mar 29 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 113.99702 * 2 1 4 4 C 1.53006 * 109.47089 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.46867 * 64.99917 * 4 3 2 6 6 C 1.34804 * 116.99925 * 179.97438 * 5 4 3 7 7 O 1.21526 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.47288 * 120.00213 * 180.02562 * 6 5 4 9 9 C 1.39296 * 120.28603 * 354.83939 * 8 6 5 10 10 C 1.38205 * 120.08627 * 180.27692 * 9 8 6 11 11 C 1.38842 * 120.68093 * 359.73704 * 10 9 8 12 12 C 1.37598 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.40703 * 119.88779 * 0.02562 * 12 11 10 14 14 C 1.40861 * 120.33435 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00819 * 145.73608 * 14 13 12 16 16 C 1.40300 * 119.99625 * 325.73972 * 14 13 12 17 17 N 1.30615 * 120.00178 * 339.67941 * 16 14 13 18 18 Si 1.86801 * 120.00058 * 159.68932 * 16 14 13 19 19 H 1.48493 * 109.47173 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.46636 * 299.99423 * 18 16 14 21 21 H 1.48494 * 109.47212 * 59.99337 * 18 16 14 22 22 H 1.08998 * 109.47450 * 60.00488 * 1 2 3 23 23 H 1.09009 * 109.47130 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47436 * 299.99656 * 1 2 3 25 25 H 1.09001 * 109.47186 * 60.00170 * 3 2 1 26 26 H 1.09001 * 109.47078 * 299.99670 * 3 2 1 27 27 H 1.08999 * 109.47037 * 305.00294 * 4 3 2 28 28 H 1.09000 * 109.47230 * 184.99759 * 4 3 2 29 29 H 1.08000 * 119.95653 * 0.02562 * 9 8 6 30 30 H 1.07997 * 119.65882 * 179.75950 * 10 9 8 31 31 H 1.07994 * 119.70815 * 180.02562 * 11 10 9 32 32 H 1.07997 * 120.05357 * 180.02562 * 12 11 10 33 33 H 0.97001 * 119.99911 * 355.29856 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9727 0.5696 -1.2398 6 6 5.2991 0.3901 -1.3995 7 8 6.0690 0.7387 -0.5263 8 6 5.8155 -0.2274 -2.6330 9 6 4.9354 -0.7256 -3.5909 10 6 5.4245 -1.3093 -4.7442 11 6 6.7919 -1.4024 -4.9661 12 6 7.6861 -0.9151 -4.0408 13 6 7.2147 -0.3170 -2.8577 14 6 8.1217 0.1845 -1.9038 15 1 7.8713 1.0652 -1.3311 16 6 9.3507 -0.4601 -1.6977 17 7 9.5057 -1.7037 -2.0657 18 14 10.7654 0.4602 -0.8969 19 1 11.9440 -0.4371 -0.7933 20 1 11.1153 1.6445 -1.7217 21 1 10.3612 0.9046 0.4611 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8507 0.5686 0.8427 28 1 3.9784 2.1767 0.0902 29 1 3.8695 -0.6592 -3.4303 30 1 4.7359 -1.6968 -5.4805 31 1 7.1568 -1.8613 -5.8730 32 1 8.7479 -0.9916 -4.2224 33 1 8.7524 -2.2026 -2.4185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058248814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:52 Heat of formation + Delta-G solvation = -140.340984 kcal Electronic energy + Delta-G solvation = -17907.350707 eV Core-core repulsion = 14897.003300 eV Total energy + Delta-G solvation = -3010.347407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24319 -39.42669 -38.73165 -37.05698 -35.84563 -32.35246 -31.50913 -31.09519 -27.46343 -27.12046 -24.99845 -23.46525 -22.85620 -21.63757 -19.93557 -18.56693 -17.90887 -17.60636 -16.70782 -16.61813 -16.54268 -15.97823 -15.92409 -15.56643 -14.85719 -14.49555 -14.26254 -13.99084 -13.58696 -13.29712 -12.97964 -12.75302 -12.63772 -12.46284 -12.26095 -12.07839 -11.96548 -11.58106 -11.56194 -11.00417 -10.81283 -10.64864 -9.73826 -9.57933 -9.23021 -6.57450 0.21396 0.87002 1.47366 1.61868 1.77920 1.91667 1.93001 2.28749 2.65511 2.77824 3.45126 3.88347 4.05114 4.13329 4.28296 4.31987 4.37321 4.49764 4.52224 4.55177 4.64273 4.82092 4.85722 4.87887 5.04999 5.34125 5.48588 5.59783 5.67431 5.80329 5.90715 6.13916 6.19377 6.25565 6.67882 6.76816 7.17276 7.95082 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.006410 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.596768 B = 4367.055206 C = 5356.972383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.072 3.928 4 C 0.059 3.941 5 O -0.361 6.361 6 C 0.502 3.498 7 O -0.546 6.546 8 C -0.280 4.280 9 C -0.026 4.026 10 C -0.246 4.246 11 C -0.062 4.062 12 C -0.222 4.222 13 C 0.099 3.901 14 C -0.506 4.506 15 H 0.083 0.917 16 C 0.000 4.000 17 N -0.804 5.804 18 Si 1.118 2.882 19 H -0.263 1.263 20 H -0.256 1.256 21 H -0.270 1.270 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 4.344 1.191 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.004 4.004 4 C -0.015 4.015 5 O -0.280 6.280 6 C 0.354 3.646 7 O -0.439 6.439 8 C -0.283 4.283 9 C -0.045 4.045 10 C -0.265 4.265 11 C -0.080 4.080 12 C -0.241 4.241 13 C 0.096 3.904 14 C -0.533 4.533 15 H 0.101 0.899 16 C -0.216 4.216 17 N -0.427 5.427 18 Si 0.934 3.066 19 H -0.187 1.187 20 H -0.180 1.180 21 H -0.195 1.195 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.933 4.084 1.894 10.905 hybrid contribution -1.755 0.235 -0.215 1.784 sum -11.688 4.320 1.679 12.573 Atomic orbital electron populations 1.22948 0.78998 1.03834 1.01256 1.87949 1.22019 1.28397 1.95694 1.22665 0.89179 0.85396 1.03208 1.23230 0.95182 0.98482 0.84634 1.86586 1.25097 1.74831 1.41442 1.21360 0.79781 0.76153 0.87344 1.90706 1.57941 1.50557 1.44731 1.19084 0.94092 1.18668 0.96441 1.21215 0.98423 0.92503 0.92312 1.20847 0.95173 1.10483 0.99974 1.21235 0.93614 0.95402 0.97767 1.21199 0.98596 1.08959 0.95339 1.17847 0.90903 0.89018 0.92660 1.21175 1.01514 1.12406 1.18230 0.89903 1.28589 1.02902 0.95702 0.94450 1.70497 1.36295 1.08781 1.27145 0.83007 0.71779 0.75285 0.76531 1.18665 1.18047 1.19499 0.92987 0.88989 0.92206 0.87809 0.91082 0.92285 0.89288 0.85573 0.84410 0.84933 0.88371 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.77 10.67 -145.57 -1.55 -13.32 16 3 C 0.07 1.72 6.33 71.98 0.46 2.17 16 4 C 0.06 1.94 5.86 71.98 0.42 2.36 16 5 O -0.36 -15.34 9.45 -54.49 -0.52 -15.85 16 6 C 0.50 25.54 7.85 70.20 0.55 26.09 16 7 O -0.55 -30.38 13.38 19.75 0.26 -30.12 16 8 C -0.28 -14.54 5.92 -19.71 -0.12 -14.66 16 9 C -0.03 -1.16 9.60 22.52 0.22 -0.94 16 10 C -0.25 -9.85 10.03 22.41 0.22 -9.63 16 11 C -0.06 -2.61 10.01 22.26 0.22 -2.39 16 12 C -0.22 -11.15 7.90 22.72 0.18 -10.97 16 13 C 0.10 5.50 5.16 -21.10 -0.11 5.39 16 14 C -0.51 -29.02 7.62 23.41 0.18 -28.84 16 15 H 0.08 4.97 5.99 -2.91 -0.02 4.95 16 16 C 0.00 0.02 5.01 85.38 0.43 0.45 16 17 N -0.80 -44.13 12.60 21.89 0.28 -43.85 16 18 Si 1.12 45.59 29.98 68.60 2.06 47.65 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.13 4.96 7.61 -2.91 -0.02 4.94 16 30 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 31 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 32 H 0.10 5.05 6.99 -2.91 -0.02 5.03 16 33 H 0.28 16.16 6.62 -92.71 -0.61 15.54 16 Total: -1.00 -68.48 290.02 5.69 -62.79 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 1.26 Total: 21.96 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 3.90 Total: -29.26 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.28 Total: -43.85 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -1.80 Total: -59.29 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.06 Total: 47.65 kcal Total: -68.48 5.69 -62.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.549 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds