Wall clock time and date at job start Sun Mar 29 2020 23:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 H 1.08993 * 109.47300 * 54.99611 * 3 2 1 5 5 C 1.50707 * 109.46983 * 174.99654 * 3 2 1 6 6 H 1.07998 * 119.99689 * 119.99864 * 5 3 2 7 7 C 1.37868 * 119.99997 * 299.99913 * 5 3 2 8 8 N 1.31523 * 120.00256 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00111 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47006 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47387 * 119.99957 * 9 7 5 12 12 H 1.48504 * 109.47120 * 239.99973 * 9 7 5 13 13 N 1.46503 * 109.46849 * 294.99463 * 3 2 1 14 14 C 1.34770 * 119.99864 * 85.00259 * 13 3 2 15 15 O 1.21539 * 120.00312 * 0.02562 * 14 13 3 16 16 C 1.47889 * 120.00009 * 179.97438 * 14 13 3 17 17 C 1.36296 * 119.75479 * 179.97438 * 16 14 13 18 18 C 1.40408 * 119.90319 * 179.74596 * 17 16 14 19 19 C 1.36113 * 119.41763 * 0.25969 * 18 17 16 20 20 C 1.41244 * 119.50579 * 359.97438 * 19 18 17 21 21 O 1.21965 * 119.95092 * 180.02562 * 20 19 18 22 22 N 1.34672 * 120.09059 * 359.97438 * 20 19 18 23 23 H 0.96997 * 119.70288 * 180.02562 * 22 20 19 24 24 H 1.09011 * 109.46479 * 60.00123 * 1 2 3 25 25 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47376 * 300.00635 * 1 2 3 27 27 H 1.09000 * 109.47376 * 239.99365 * 2 1 3 28 28 H 1.09002 * 109.46262 * 119.99785 * 2 1 3 29 29 H 0.96999 * 120.00172 * 180.02562 * 8 7 5 30 30 H 0.97005 * 119.99952 * 265.00074 * 13 3 2 31 31 H 1.08002 * 120.05252 * 0.03000 * 17 16 14 32 32 H 1.07998 * 120.29343 * 180.27603 * 18 17 16 33 33 H 1.08001 * 120.24707 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1735 9 14 6.0049 0.8811 1.3820 10 1 6.5988 1.5460 0.1944 11 1 6.3989 1.6165 2.6104 12 1 6.4970 -0.5177 1.4633 13 7 1.6526 2.0974 -1.2519 14 6 0.4354 2.6643 -1.3671 15 8 -0.3408 2.6326 -0.4323 16 6 0.0444 3.3259 -2.6307 17 6 -1.1881 3.8971 -2.7419 18 6 -1.5605 4.5308 -3.9383 19 6 -0.6839 4.5623 -4.9791 20 6 0.5850 3.9580 -4.8384 21 8 1.3769 3.9819 -5.7657 22 7 0.9219 3.3566 -3.6816 23 1 1.7950 2.9437 -3.5910 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8291 -0.0604 2.9505 30 1 2.2722 2.1229 -1.9979 31 1 -1.8755 3.8665 -1.9095 32 1 -2.5338 4.9894 -4.0318 33 1 -0.9563 5.0464 -5.9053 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229982994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:58 Heat of formation + Delta-G solvation = -47.195678 kcal Electronic energy + Delta-G solvation = -18131.746833 eV Core-core repulsion = 15157.731260 eV Total energy + Delta-G solvation = -2974.015573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.27887 -39.18479 -36.76271 -35.37413 -33.92932 -32.44526 -31.11648 -29.96920 -27.27665 -24.95101 -23.61038 -22.84241 -20.96327 -19.73222 -19.09143 -17.67586 -16.92027 -16.15694 -15.70608 -15.46272 -15.21378 -14.95239 -14.64114 -14.46243 -13.51315 -12.86866 -12.61696 -12.48986 -12.16083 -11.87141 -11.58790 -11.39033 -11.10490 -10.96595 -10.58381 -10.50093 -10.38563 -10.28778 -9.79679 -9.48247 -9.22332 -8.66014 -8.26472 -8.06343 -6.25621 -4.36263 0.42701 1.65581 2.77943 3.11607 3.16944 3.25356 3.27364 3.48653 3.74184 4.24351 4.56268 4.83501 4.94149 5.06468 5.08762 5.27154 5.81556 6.06344 6.16119 6.24649 6.29151 6.45090 6.48518 6.76711 6.86732 7.01186 7.04350 7.19333 7.40950 7.53510 7.70402 7.93355 7.99825 8.28864 8.49715 8.73744 9.31359 10.79651 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.005912 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.470062 B = 4735.245708 C = 5431.020191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.695 5.695 14 C 0.538 3.462 15 O -0.516 6.516 16 C 0.123 3.877 17 C -0.166 4.166 18 C -0.021 4.021 19 C -0.228 4.228 20 C 0.518 3.482 21 O -0.555 6.555 22 N -0.600 5.600 23 H 0.414 0.586 24 H 0.036 0.964 25 H 0.026 0.974 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.103 0.897 29 H 0.266 0.734 30 H 0.385 0.615 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 4.845 -8.362 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.343 5.343 14 C 0.320 3.680 15 O -0.392 6.392 16 C 0.012 3.988 17 C -0.190 4.190 18 C -0.043 4.043 19 C -0.251 4.251 20 C 0.317 3.683 21 O -0.438 6.438 22 N -0.236 5.236 23 H 0.253 0.747 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.219 0.781 31 H 0.177 0.823 32 H 0.159 0.841 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.910 4.775 -8.048 12.254 hybrid contribution 1.608 -0.221 -0.167 1.631 sum -6.302 4.555 -8.215 11.312 Atomic orbital electron populations 1.21864 0.98220 0.98483 1.01128 1.21966 0.92707 0.99403 1.02720 1.18977 0.94750 0.89376 0.80040 0.92643 1.21212 0.90304 1.39644 1.06648 0.91903 1.24869 0.98845 0.94521 0.95234 1.69889 1.35241 1.37268 1.09285 0.86367 0.84474 0.77904 0.78239 1.19686 1.20762 1.20755 1.46612 1.13780 1.54831 1.19090 1.17888 0.83795 0.80264 0.86019 1.90821 1.51160 1.59157 1.38073 1.20964 0.91564 0.97851 0.88419 1.20908 0.95596 1.02344 1.00189 1.21487 0.99185 0.92249 0.91373 1.22328 0.93922 1.06871 1.01930 1.17299 0.89450 0.80076 0.81429 1.90980 1.53140 1.61748 1.37936 1.43823 1.18066 1.49069 1.12661 0.74677 0.94507 0.95462 0.92913 0.94784 0.87874 0.92407 0.78147 0.82349 0.84061 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.55 16 2 C -0.13 -2.92 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.25 2.24 -69.08 -0.15 6.09 16 4 H 0.06 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.44 11.30 55.43 0.63 -22.82 16 9 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -12.97 5.01 -55.87 -0.28 -13.25 16 14 C 0.54 9.49 6.36 -12.31 -0.08 9.41 16 15 O -0.52 -10.50 13.40 5.33 0.07 -10.43 16 16 C 0.12 1.73 6.77 -82.33 -0.56 1.17 16 17 C -0.17 -1.97 9.55 -39.46 -0.38 -2.35 16 18 C -0.02 -0.20 10.08 -39.53 -0.40 -0.60 16 19 C -0.23 -2.58 10.00 -39.20 -0.39 -2.97 16 20 C 0.52 7.51 7.71 -15.16 -0.12 7.39 16 21 O -0.56 -9.95 17.93 4.95 0.09 -9.86 16 22 N -0.60 -8.12 5.28 -11.45 -0.06 -8.18 16 23 H 0.41 5.24 7.03 -40.82 -0.29 4.96 16 24 H 0.04 0.72 5.65 -51.92 -0.29 0.43 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.39 6.23 6.77 -40.82 -0.28 5.95 16 31 H 0.16 1.80 7.56 -52.49 -0.40 1.41 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 281.29 15.07 4.24 4.24 Total: -1.00 -29.70 281.29 -6.23 -35.93 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.59 Total: 9.04 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.30 Total: 0.49 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.29 Total: -44.25 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.16 Total: -20.29 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.70 -6.23 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229982994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.269 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds