Wall clock time and date at job start Sun Mar 29 2020 22:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50705 * 120.00035 * 2 1 4 4 N 1.46491 * 109.47127 * 124.99827 * 3 2 1 5 5 C 1.46502 * 120.00229 * 85.01847 * 4 3 2 6 6 C 1.50706 * 109.46845 * 95.43493 * 5 4 3 7 7 H 1.08004 * 119.99921 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99745 * 180.02562 * 6 5 4 9 9 N 1.31504 * 120.00174 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99681 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47307 * 89.99544 * 10 8 6 12 12 H 1.48498 * 109.47073 * 210.00079 * 10 8 6 13 13 H 1.48501 * 109.47249 * 329.99755 * 10 8 6 14 14 C 1.34779 * 120.00267 * 265.02516 * 4 3 2 15 15 O 1.21613 * 119.99508 * 5.56334 * 14 4 3 16 16 C 1.47422 * 120.00372 * 185.57103 * 14 4 3 17 17 N 1.36068 * 126.44669 * 354.76224 * 16 14 4 18 18 C 1.29936 * 108.47586 * 179.85915 * 17 16 14 19 19 O 1.34041 * 109.24327 * 0.40723 * 18 17 16 20 20 C 1.34263 * 108.22866 * 359.74299 * 19 18 17 21 21 C 1.50698 * 126.52589 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99748 * 180.02562 * 1 2 3 23 23 H 1.07994 * 119.99669 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00057 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.46712 * 4.99880 * 3 2 1 26 26 H 1.08993 * 109.46891 * 244.99954 * 3 2 1 27 27 H 1.08992 * 109.47541 * 215.43273 * 5 4 3 28 28 H 1.09000 * 109.46915 * 335.43687 * 5 4 3 29 29 H 0.97005 * 120.00201 * 180.02562 * 9 8 6 30 30 H 1.08001 * 125.37604 * 180.11220 * 18 17 16 31 31 H 1.09000 * 109.47250 * 270.04072 * 21 20 19 32 32 H 1.09003 * 109.47354 * 30.04329 * 21 20 19 33 33 H 1.09002 * 109.47093 * 150.04335 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3219 0.7272 1.0023 6 6 5.3236 1.7897 0.6297 7 1 5.0028 2.8130 0.5014 8 6 6.6492 1.4552 0.4515 9 7 7.0397 0.2091 0.6072 10 14 7.8910 2.7724 -0.0096 11 1 8.4641 3.3664 1.2248 12 1 8.9787 2.1658 -0.8183 13 1 7.2171 3.8322 -0.8021 14 6 2.6278 1.9129 2.2912 15 8 1.4923 2.3245 2.4332 16 6 3.6039 2.0494 3.3875 17 7 4.8698 1.5511 3.4094 18 6 5.4215 1.8781 4.5395 19 8 4.5442 2.5768 5.2736 20 6 3.4064 2.6926 4.5704 21 6 2.1496 3.3997 5.0080 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8501 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9313 27 1 4.6087 0.2743 1.9513 28 1 4.2987 -0.0383 0.2267 29 1 7.9724 -0.0261 0.4822 30 1 6.4265 1.6228 4.8416 31 1 1.5005 2.6970 5.5306 32 1 2.4086 4.2211 5.6761 33 1 1.6304 3.7924 4.1337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292497360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:29 Heat of formation + Delta-G solvation = 1.236756 kcal Electronic energy + Delta-G solvation = -18614.482776 eV Core-core repulsion = 15642.567391 eV Total energy + Delta-G solvation = -2971.915385 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.20480 -40.56967 -37.13149 -35.80615 -34.85934 -33.73300 -33.20959 -29.24054 -28.68416 -26.93798 -25.05355 -24.05360 -22.66467 -20.97877 -20.32622 -18.64208 -18.24224 -17.64602 -17.49119 -16.88104 -16.27428 -15.98224 -15.61455 -15.18169 -14.76953 -14.26281 -14.22903 -14.13954 -13.82874 -13.66573 -13.13165 -12.98789 -12.73224 -12.53955 -12.28013 -12.07073 -12.01462 -11.62372 -11.16269 -10.83524 -10.42724 -10.25444 -9.84044 -9.35992 -8.03926 -6.11154 0.22827 1.27993 1.33913 1.39936 1.42223 1.50718 1.79242 2.34044 2.50996 2.51736 3.27886 3.38311 3.80312 3.88491 4.05003 4.22277 4.38501 4.50902 4.61084 4.65689 4.78072 4.95596 5.02662 5.03492 5.19838 5.23499 5.53145 5.68068 5.82091 5.87329 5.93174 6.26113 6.53744 6.77246 6.97354 7.28411 7.53681 9.03620 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.010814 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.996030 B = 2588.662245 C = 3992.484692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.184 4.184 3 C 0.141 3.859 4 N -0.585 5.585 5 C 0.250 3.750 6 C -0.505 4.505 7 H 0.032 0.968 8 C 0.032 3.968 9 N -0.916 5.916 10 Si 0.942 3.058 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.280 1.280 14 C 0.590 3.410 15 O -0.576 6.576 16 C -0.100 4.100 17 N -0.442 5.442 18 C 0.158 3.842 19 O -0.201 6.201 20 C 0.030 3.970 21 C -0.063 4.063 22 H 0.118 0.882 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.006 0.994 29 H 0.262 0.738 30 H 0.284 0.716 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 2.979 6.957 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.019 3.981 4 N -0.314 5.314 5 C 0.130 3.870 6 C -0.544 4.544 7 H 0.051 0.949 8 C -0.168 4.168 9 N -0.556 5.556 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.379 3.621 15 O -0.459 6.459 16 C -0.219 4.219 17 N -0.169 5.169 18 C -0.070 4.070 19 O -0.088 6.088 20 C -0.028 4.028 21 C -0.119 4.119 22 H 0.137 0.863 23 H 0.121 0.879 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.299 0.701 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.124 2.708 6.495 10.014 hybrid contribution 1.057 0.678 -0.112 1.261 sum -6.068 3.386 6.383 9.435 Atomic orbital electron populations 1.23983 0.94861 1.02917 0.98003 1.23212 0.96911 0.98023 1.02202 1.20568 0.91982 0.96505 0.89025 1.48127 1.17123 1.54645 1.11460 1.19427 0.76775 0.92660 0.98169 1.21236 0.93427 0.93775 1.45982 0.94943 1.25331 0.99192 0.96721 0.95509 1.70015 1.16832 1.18065 1.50714 0.85821 0.79275 0.79785 0.78229 1.20162 1.20710 1.20498 1.17062 0.85436 0.77669 0.81919 1.90624 1.19748 1.53172 1.82367 1.21557 0.94243 1.08506 0.97629 1.71394 1.05480 1.20476 1.19554 1.28988 0.98173 0.93864 0.85978 1.84331 1.21045 1.58972 1.44447 1.24135 0.89224 0.99269 0.90130 1.20556 0.87435 1.00075 1.03840 0.86344 0.87897 0.88037 0.90032 0.90210 0.92268 0.97557 0.92937 0.70117 0.87913 0.87689 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 14.32 67.77 0.97 -3.47 16 2 C -0.18 -6.27 9.84 25.64 0.25 -6.01 16 3 C 0.14 5.52 5.84 85.64 0.50 6.02 16 4 N -0.59 -26.97 2.45 -834.41 -2.05 -29.02 16 5 C 0.25 13.00 4.77 85.63 0.41 13.40 16 6 C -0.51 -27.80 8.02 25.60 0.21 -27.60 16 7 H 0.03 1.86 7.81 -2.91 -0.02 1.84 16 8 C 0.03 1.74 5.46 84.66 0.46 2.20 16 9 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 10 Si 0.94 43.52 29.54 68.60 2.03 45.55 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.59 26.71 7.61 86.66 0.66 27.37 16 15 O -0.58 -25.41 14.42 -4.07 -0.06 -25.47 16 16 C -0.10 -4.28 6.58 40.41 0.27 -4.01 16 17 N -0.44 -19.38 6.98 -305.16 -2.13 -21.51 16 18 C 0.16 5.30 13.19 130.52 1.72 7.02 16 19 O -0.20 -6.31 10.73 0.41 0.00 -6.30 16 20 C 0.03 1.02 7.44 25.18 0.19 1.20 16 21 C -0.06 -1.59 9.83 71.24 0.70 -0.89 16 22 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 23 H 0.10 2.72 7.84 -2.91 -0.02 2.69 16 24 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.08 3.07 7.01 -2.39 -0.02 3.06 16 26 H 0.08 3.12 8.11 -2.39 -0.02 3.10 16 27 H 0.06 3.28 5.59 -2.39 -0.01 3.27 16 28 H 0.01 0.35 8.03 -2.39 -0.02 0.33 16 29 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 30 H 0.28 6.63 8.06 -2.91 -0.02 6.61 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.66 6.59 -2.39 -0.02 2.65 16 Total: -1.00 -67.32 291.38 5.52 -61.79 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.11 Total: 11.31 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.33 Total: 15.24 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.89 Total: -102.12 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.32 5.52 -61.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292497360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.029 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds