Wall clock time and date at job start Sun Mar 29 2020 23:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47064 * 324.54735 * 3 2 1 5 5 C 1.36130 * 119.99495 * 262.66530 * 4 3 2 6 6 H 1.07998 * 119.99499 * 202.65968 * 5 4 3 7 7 C 1.39579 * 119.99905 * 22.66926 * 5 4 3 8 8 N 1.31013 * 120.00458 * 22.92102 * 7 5 4 9 9 Si 1.86800 * 119.99687 * 202.92313 * 7 5 4 10 10 H 1.48500 * 109.47427 * 90.00019 * 9 7 5 11 11 H 1.48505 * 109.47206 * 209.99647 * 9 7 5 12 12 H 1.48500 * 109.47424 * 329.99745 * 9 7 5 13 13 C 1.34770 * 120.00438 * 82.66730 * 4 3 2 14 14 O 1.21499 * 120.00379 * 183.71842 * 13 4 3 15 15 C 1.48835 * 119.99848 * 3.72747 * 13 4 3 16 16 O 1.21440 * 119.99890 * 353.83493 * 15 13 4 17 17 N 1.34777 * 119.99766 * 173.83623 * 15 13 4 18 18 C 1.46502 * 119.99630 * 179.72274 * 17 15 13 19 19 C 1.53000 * 109.47005 * 179.97438 * 18 17 15 20 20 C 1.52996 * 117.50185 * 243.61963 * 19 18 17 21 21 C 1.52994 * 60.00273 * 252.51184 * 20 19 18 22 22 H 4.40639 * 5.51392 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.46743 * 204.54653 * 3 2 1 24 24 H 1.09000 * 109.47230 * 84.54784 * 3 2 1 25 25 H 0.97001 * 120.00299 * 180.02562 * 8 7 5 26 26 H 0.96994 * 120.00439 * 359.97438 * 17 15 13 27 27 H 1.09002 * 109.47354 * 300.00328 * 18 17 15 28 28 H 1.08997 * 109.47354 * 59.99824 * 18 17 15 29 29 H 1.09001 * 115.55008 * 29.33590 * 19 18 17 30 30 H 1.09007 * 117.49387 * 0.02562 * 20 19 18 31 31 H 1.09003 * 117.50065 * 145.02001 * 20 19 18 32 32 H 1.09002 * 117.50086 * 252.51157 * 21 20 19 33 33 H 1.09006 * 117.49996 * 107.48741 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1242 0.8011 5 6 3.5036 -0.9276 2.0967 6 1 4.1843 -1.6164 2.5748 7 6 3.0016 0.1639 2.8072 8 7 1.8800 0.7288 2.4339 9 14 3.9291 0.8194 4.2903 10 1 4.8899 1.8632 3.8516 11 1 2.9663 1.4074 5.2560 12 1 4.6684 -0.2912 4.9423 13 6 3.2197 -2.3536 0.2556 14 8 3.5605 -3.2991 0.9383 15 6 2.8959 -2.5531 -1.1834 16 8 2.4487 -1.6334 -1.8383 17 7 3.0991 -3.7545 -1.7595 18 6 2.7747 -3.9525 -3.1744 19 6 3.0979 -5.3934 -3.5749 20 6 4.1877 -5.6066 -4.6274 21 6 2.7190 -5.8353 -4.9898 22 1 -1.0498 -0.0002 0.0004 23 1 3.0089 0.9356 0.4269 24 1 3.0095 -0.0968 -1.0230 25 1 1.5314 1.4877 2.9274 26 1 3.4567 -4.4890 -1.2366 27 1 1.7139 -3.7597 -3.3345 28 1 3.3644 -3.2660 -3.7819 29 1 3.0159 -6.1325 -2.7780 30 1 4.6747 -4.7203 -5.0342 31 1 4.8231 -6.4861 -4.5229 32 1 2.3881 -6.8651 -5.1238 33 1 2.2395 -5.0994 -5.6354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:11 Heat of formation + Delta-G solvation = 33.533239 kcal Electronic energy + Delta-G solvation = -17998.608014 eV Core-core repulsion = 15028.093110 eV Total energy + Delta-G solvation = -2970.514904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75313 -37.97734 -36.99606 -35.42187 -33.60146 -32.07221 -31.18666 -27.51082 -26.45102 -25.22929 -22.56940 -22.34385 -20.93063 -19.41209 -17.88916 -17.18392 -16.42287 -16.11813 -15.68726 -14.94729 -14.84337 -14.28076 -14.15775 -13.73701 -13.66846 -12.98132 -12.71455 -12.18451 -12.01956 -11.71047 -11.67254 -11.46598 -11.11911 -10.64953 -10.56141 -10.44202 -10.28057 -10.12608 -9.31100 -9.15967 -8.86461 -8.62541 -8.12682 -7.93020 -6.50152 -4.00024 2.45628 3.14681 3.16314 3.21273 3.34731 3.68091 3.96328 4.10536 4.26307 4.37497 4.56702 4.77254 4.82599 4.98776 5.06864 5.22500 5.47291 5.57494 5.67743 5.73529 5.75449 5.83735 5.95748 6.10652 6.57557 6.71582 6.94095 7.17466 7.37969 7.69359 7.93924 8.24713 8.64056 8.98942 9.02905 9.17762 9.76466 10.46728 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.005460 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.533108 B = 5126.768365 C = 5658.470598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.093 4.093 3 C 0.215 3.785 4 N -0.382 5.382 5 C -0.324 4.324 6 H 0.110 0.890 7 C 0.041 3.959 8 N -0.828 5.828 9 Si 0.926 3.074 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.406 3.594 14 O -0.585 6.585 15 C 0.509 3.491 16 O -0.534 6.534 17 N -0.713 5.713 18 C 0.152 3.848 19 C -0.168 4.168 20 C -0.177 4.177 21 C -0.172 4.172 22 H 0.197 0.803 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.275 0.725 26 H 0.409 0.591 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -5.749 -10.303 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.095 4.095 3 C 0.093 3.907 4 N -0.098 5.098 5 C -0.453 4.453 6 H 0.127 0.873 7 C -0.169 4.169 8 N -0.463 5.463 9 Si 0.752 3.248 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.190 1.190 13 C 0.193 3.807 14 O -0.472 6.472 15 C 0.294 3.706 16 O -0.411 6.411 17 N -0.368 5.368 18 C 0.028 3.972 19 C -0.186 4.186 20 C -0.214 4.214 21 C -0.210 4.210 22 H 0.214 0.786 23 H 0.110 0.890 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.245 0.755 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.551 -5.359 -10.392 11.794 hybrid contribution 0.053 0.053 1.017 1.020 sum 1.604 -5.306 -9.374 10.890 Atomic orbital electron populations 1.24117 0.95255 1.02923 1.06539 1.22782 0.93967 0.97825 0.94878 1.18777 0.85075 0.91061 0.95790 1.43391 1.50404 1.04980 1.11034 1.19766 1.25988 1.11804 0.87698 0.87280 1.25574 0.94647 0.97446 0.99229 1.69977 1.15021 1.21225 1.40065 0.85934 0.79332 0.79340 0.80225 1.19900 1.20784 1.18972 1.19262 0.90025 0.84150 0.87293 1.90583 1.54296 1.39465 1.62815 1.20725 0.78267 0.82330 0.89295 1.90632 1.44386 1.40408 1.65672 1.45707 1.66396 1.13804 1.10853 1.20833 1.00843 0.93371 0.82127 1.22486 1.04902 0.97707 0.93511 1.23079 0.91711 1.03566 1.03056 1.22943 0.98269 1.02469 0.97311 0.78609 0.88964 0.87923 0.91416 0.75521 0.91228 0.91447 0.87046 0.88514 0.88702 0.88587 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.24 19.25 29.55 0.57 -5.68 16 2 C -0.09 -2.32 10.30 -37.12 -0.38 -2.71 16 3 C 0.22 5.25 4.75 -6.83 -0.03 5.22 16 4 N -0.38 -10.09 2.57 -118.70 -0.31 -10.40 16 5 C -0.32 -8.86 9.18 -15.14 -0.14 -9.00 16 6 H 0.11 3.06 7.51 -52.49 -0.39 2.67 16 7 C 0.04 1.05 4.77 -17.40 -0.08 0.97 16 8 N -0.83 -21.75 9.82 55.53 0.55 -21.21 16 9 Si 0.93 19.72 29.61 -169.99 -5.03 14.68 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 13 C 0.41 10.38 7.58 -11.88 -0.09 10.29 16 14 O -0.58 -15.97 16.19 5.37 0.09 -15.89 16 15 C 0.51 11.11 7.73 -11.87 -0.09 11.02 16 16 O -0.53 -12.12 12.32 5.42 0.07 -12.06 16 17 N -0.71 -12.38 5.55 -60.93 -0.34 -12.72 16 18 C 0.15 2.11 5.96 -4.04 -0.02 2.09 16 19 C -0.17 -1.80 5.85 -90.62 -0.53 -2.33 16 20 C -0.18 -1.63 10.18 -26.74 -0.27 -1.90 16 21 C -0.17 -1.52 10.25 -26.73 -0.27 -1.79 16 22 H 0.20 3.74 7.80 -54.10 -0.42 3.32 16 23 H 0.09 2.25 6.75 -51.93 -0.35 1.90 16 24 H 0.10 2.37 5.46 -51.93 -0.28 2.09 16 25 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 26 H 0.41 6.73 7.87 -40.82 -0.32 6.41 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 29 H 0.11 1.16 8.04 -51.93 -0.42 0.75 16 30 H 0.10 0.88 8.03 -51.92 -0.42 0.47 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -31.13 293.37 -5.75 -36.88 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.84 Total: 10.12 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.35 Total: 6.17 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.10 Total: -44.32 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: 0.15 Total: -27.94 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.13 -5.75 -36.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.409 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds