Wall clock time and date at job start Sun Mar 29 2020 23:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47064 * 324.54735 * 3 2 1 5 5 C 1.36130 * 119.99495 * 262.66530 * 4 3 2 6 6 H 1.07998 * 119.99499 * 202.65968 * 5 4 3 7 7 C 1.39579 * 119.99905 * 22.66926 * 5 4 3 8 8 N 1.31013 * 120.00458 * 22.92102 * 7 5 4 9 9 Si 1.86800 * 119.99687 * 202.92313 * 7 5 4 10 10 H 1.48500 * 109.47427 * 90.00019 * 9 7 5 11 11 H 1.48505 * 109.47206 * 209.99647 * 9 7 5 12 12 H 1.48500 * 109.47424 * 329.99745 * 9 7 5 13 13 C 1.34770 * 120.00438 * 82.66730 * 4 3 2 14 14 O 1.21499 * 120.00379 * 183.71842 * 13 4 3 15 15 C 1.48835 * 119.99848 * 3.72747 * 13 4 3 16 16 O 1.21440 * 119.99890 * 353.83493 * 15 13 4 17 17 N 1.34777 * 119.99766 * 173.83623 * 15 13 4 18 18 C 1.46502 * 119.99630 * 179.72274 * 17 15 13 19 19 C 1.53000 * 109.47005 * 179.97438 * 18 17 15 20 20 C 1.52996 * 117.50185 * 243.61963 * 19 18 17 21 21 C 1.52994 * 60.00273 * 252.51184 * 20 19 18 22 22 H 4.40639 * 5.51392 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.46743 * 204.54653 * 3 2 1 24 24 H 1.09000 * 109.47230 * 84.54784 * 3 2 1 25 25 H 0.97001 * 120.00299 * 180.02562 * 8 7 5 26 26 H 0.96994 * 120.00439 * 359.97438 * 17 15 13 27 27 H 1.09002 * 109.47354 * 300.00328 * 18 17 15 28 28 H 1.08997 * 109.47354 * 59.99824 * 18 17 15 29 29 H 1.09001 * 115.55008 * 29.33590 * 19 18 17 30 30 H 1.09007 * 117.49387 * 0.02562 * 20 19 18 31 31 H 1.09003 * 117.50065 * 145.02001 * 20 19 18 32 32 H 1.09002 * 117.50086 * 252.51157 * 21 20 19 33 33 H 1.09006 * 117.49996 * 107.48741 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.1242 0.8011 5 6 3.5036 -0.9276 2.0967 6 1 4.1843 -1.6164 2.5748 7 6 3.0016 0.1639 2.8072 8 7 1.8800 0.7288 2.4339 9 14 3.9291 0.8194 4.2903 10 1 4.8899 1.8632 3.8516 11 1 2.9663 1.4074 5.2560 12 1 4.6684 -0.2912 4.9423 13 6 3.2197 -2.3536 0.2556 14 8 3.5605 -3.2991 0.9383 15 6 2.8959 -2.5531 -1.1834 16 8 2.4487 -1.6334 -1.8383 17 7 3.0991 -3.7545 -1.7595 18 6 2.7747 -3.9525 -3.1744 19 6 3.0979 -5.3934 -3.5749 20 6 4.1877 -5.6066 -4.6274 21 6 2.7190 -5.8353 -4.9898 22 1 -1.0498 -0.0002 0.0004 23 1 3.0089 0.9356 0.4269 24 1 3.0095 -0.0968 -1.0230 25 1 1.5314 1.4877 2.9274 26 1 3.4567 -4.4890 -1.2366 27 1 1.7139 -3.7597 -3.3345 28 1 3.3644 -3.2660 -3.7819 29 1 3.0159 -6.1325 -2.7780 30 1 4.6747 -4.7203 -5.0342 31 1 4.8231 -6.4861 -4.5229 32 1 2.3881 -6.8651 -5.1238 33 1 2.2395 -5.0994 -5.6354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490985945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:11 Heat of formation + Delta-G solvation = 13.128320 kcal Electronic energy + Delta-G solvation = -17999.492838 eV Core-core repulsion = 15028.093110 eV Total energy + Delta-G solvation = -2971.399728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52938 -39.44673 -38.31182 -37.35101 -35.09427 -34.01137 -33.11205 -28.95253 -28.33302 -27.05514 -24.13404 -23.21411 -22.00624 -21.03219 -19.80754 -18.93383 -18.22083 -17.71354 -17.21741 -16.64854 -16.40022 -15.95752 -15.62573 -15.18038 -14.96970 -14.63366 -14.29136 -14.07497 -13.84843 -13.57607 -12.85950 -12.57466 -12.40265 -12.33843 -12.16942 -12.03543 -11.35987 -11.25290 -11.14083 -11.04461 -10.70944 -10.13884 -10.07240 -9.85277 -8.45790 -6.07321 0.62649 1.42034 1.46582 1.54816 1.76560 2.14312 2.30814 2.37868 2.48763 2.88549 3.00748 3.31931 3.68359 3.79822 3.95734 4.00259 4.10126 4.27496 4.63267 4.70966 4.74520 4.81087 4.82507 5.04344 5.19357 5.28763 5.34411 5.38888 5.43398 5.78189 6.16477 6.36766 6.86389 7.06355 7.14927 7.22391 7.77111 8.50458 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.036711 B = 0.005460 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.533108 B = 5126.768365 C = 5658.470598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.137 4.137 3 C 0.222 3.778 4 N -0.393 5.393 5 C -0.365 4.365 6 H 0.090 0.910 7 C 0.011 3.989 8 N -0.847 5.847 9 Si 0.997 3.003 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.269 1.269 13 C 0.391 3.609 14 O -0.614 6.614 15 C 0.513 3.487 16 O -0.545 6.545 17 N -0.695 5.695 18 C 0.152 3.848 19 C -0.183 4.183 20 C -0.173 4.173 21 C -0.158 4.158 22 H 0.233 0.767 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.281 0.719 26 H 0.414 0.586 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 -5.975 -11.004 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.108 5.108 5 C -0.492 4.492 6 H 0.108 0.892 7 C -0.198 4.198 8 N -0.480 5.480 9 Si 0.819 3.181 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.193 1.193 13 C 0.178 3.822 14 O -0.503 6.503 15 C 0.296 3.704 16 O -0.424 6.424 17 N -0.348 5.348 18 C 0.029 3.971 19 C -0.202 4.202 20 C -0.210 4.210 21 C -0.196 4.196 22 H 0.250 0.750 23 H 0.102 0.898 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.250 0.750 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.278 -5.598 -11.131 12.525 hybrid contribution 0.077 0.068 1.178 1.182 sum 1.355 -5.530 -9.953 11.466 Atomic orbital electron populations 1.25037 0.96297 1.01151 1.04849 1.23134 0.94712 0.99489 0.96477 1.18725 0.85377 0.90080 0.95748 1.43604 1.50307 1.05782 1.11130 1.19806 1.27475 1.13165 0.88796 0.89225 1.26405 0.94995 0.96582 1.01771 1.70046 1.15662 1.21235 1.41108 0.84898 0.78131 0.78574 0.76512 1.18473 1.19908 1.19342 1.19976 0.89404 0.83715 0.89082 1.90536 1.55441 1.40207 1.64087 1.20080 0.78830 0.83705 0.87784 1.90613 1.45371 1.41104 1.65332 1.45700 1.64543 1.12220 1.12344 1.21032 1.00617 0.95811 0.79613 1.22380 1.07377 0.95605 0.94810 1.23176 0.92073 1.04110 1.01600 1.23060 0.97875 1.03454 0.95161 0.75040 0.89782 0.87083 0.90826 0.74964 0.91632 0.91242 0.86706 0.88524 0.87402 0.86943 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.50 19.25 74.32 1.43 -10.07 16 2 C -0.14 -6.83 10.30 31.13 0.32 -6.51 16 3 C 0.22 11.06 4.75 84.58 0.40 11.46 16 4 N -0.39 -21.32 2.57 -647.77 -1.66 -22.98 16 5 C -0.36 -20.50 9.18 84.35 0.77 -19.72 16 6 H 0.09 5.26 7.51 -2.91 -0.02 5.23 16 7 C 0.01 0.56 4.77 85.14 0.41 0.97 16 8 N -0.85 -44.40 9.82 21.76 0.21 -44.18 16 9 Si 1.00 40.35 29.61 68.60 2.03 42.38 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 11 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 C 0.39 20.51 7.58 87.08 0.66 21.17 16 14 O -0.61 -34.57 16.19 -3.71 -0.06 -34.63 16 15 C 0.51 22.57 7.73 87.08 0.67 23.25 16 16 O -0.55 -24.82 12.32 -3.53 -0.04 -24.86 16 17 N -0.70 -23.89 5.55 -465.00 -2.58 -26.47 16 18 C 0.15 4.04 5.96 86.38 0.51 4.56 16 19 C -0.18 -3.59 5.85 -10.79 -0.06 -3.65 16 20 C -0.17 -2.76 10.18 30.59 0.31 -2.45 16 21 C -0.16 -2.36 10.25 30.59 0.31 -2.04 16 22 H 0.23 8.23 7.80 -4.43 -0.03 8.20 16 23 H 0.08 4.21 6.75 -2.39 -0.02 4.19 16 24 H 0.11 5.23 5.46 -2.39 -0.01 5.22 16 25 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 26 H 0.41 13.53 7.87 -92.71 -0.73 12.80 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.84 7.87 -2.39 -0.02 1.83 16 29 H 0.11 2.20 8.04 -2.39 -0.02 2.18 16 30 H 0.10 1.56 8.03 -2.38 -0.02 1.54 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -67.19 293.37 4.04 -63.15 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.40 Total: 30.63 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 5.74 Total: 16.96 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -4.03 Total: -93.63 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -0.10 Total: -59.49 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -67.19 4.04 -63.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.278 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds