Wall clock time and date at job start Sun Mar 29 2020 23:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46980 * 2 1 4 4 H 1.08996 * 109.47301 * 304.99980 * 3 2 1 5 5 C 1.50701 * 109.47187 * 184.99381 * 3 2 1 6 6 H 1.08003 * 120.00368 * 239.99734 * 5 3 2 7 7 C 1.37881 * 119.99728 * 60.00342 * 5 3 2 8 8 N 1.31519 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00135 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47377 * 59.99637 * 9 7 5 11 11 H 1.48497 * 109.47457 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47251 * 299.99871 * 9 7 5 13 13 O 1.45202 * 109.47208 * 64.99982 * 3 2 1 14 14 C 1.34682 * 116.99886 * 269.99908 * 13 3 2 15 15 O 1.21439 * 119.99759 * 359.97438 * 14 13 3 16 16 C 1.48050 * 120.00435 * 180.02562 * 14 13 3 17 17 C 1.39753 * 120.18755 * 179.97438 * 16 14 13 18 18 C 1.38828 * 117.89483 * 180.02562 * 17 16 14 19 19 C 1.38569 * 118.07339 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.96394 * 179.97438 * 19 18 17 21 21 N 1.32189 * 120.07552 * 0.02562 * 19 18 17 22 22 N 1.28352 * 122.30127 * 359.97438 * 21 19 18 23 23 H 1.08991 * 109.47398 * 300.00048 * 1 2 3 24 24 H 1.09004 * 109.46613 * 60.00429 * 1 2 3 25 25 H 1.09003 * 109.46793 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47621 * 239.99819 * 2 1 3 27 27 H 1.09004 * 109.46613 * 119.99571 * 2 1 3 28 28 H 0.96997 * 119.99215 * 180.02562 * 8 7 5 29 29 H 1.08001 * 121.05387 * 359.97438 * 17 16 14 30 30 H 1.07996 * 120.96296 * 179.97438 * 18 17 16 31 31 H 1.09001 * 109.47185 * 89.99886 * 20 19 18 32 32 H 1.08997 * 109.47585 * 209.99963 * 20 19 18 33 33 H 1.09001 * 109.47304 * 329.99919 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8890 0.6525 7 6 4.1434 0.8784 -1.2278 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8813 -1.3816 10 1 6.5976 0.1474 -0.2347 11 1 6.3980 0.2168 -2.6501 12 1 6.4995 2.2816 -1.3819 13 8 1.6558 2.0917 1.2407 14 6 0.4687 2.7276 1.2560 15 8 -0.2263 2.7399 0.2602 16 6 0.0115 3.4125 2.4863 17 6 -1.2194 4.0740 2.5062 18 6 -1.6010 4.7007 3.6848 19 6 -0.7393 4.6330 4.7679 20 6 -1.1107 5.2988 6.0678 21 7 0.4085 3.9860 4.6618 22 7 0.7698 3.4036 3.5766 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8295 -0.0618 -2.9493 29 1 -1.8535 4.0975 1.6322 30 1 -2.5417 5.2265 3.7551 31 1 -1.6598 4.5945 6.6928 32 1 -0.2053 5.6148 6.5859 33 1 -1.7356 6.1685 5.8651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344580915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:48 Heat of formation + Delta-G solvation = -37.044889 kcal Electronic energy + Delta-G solvation = -17950.628596 eV Core-core repulsion = 14977.053194 eV Total energy + Delta-G solvation = -2973.575402 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18632 -39.43145 -35.96660 -34.21475 -33.44952 -33.12723 -31.35496 -28.85529 -27.24627 -25.21954 -23.82718 -23.01909 -21.41562 -19.77088 -18.12421 -17.39336 -16.48236 -15.97144 -15.74110 -15.62540 -14.89312 -14.58853 -14.17527 -13.40291 -13.25807 -13.02177 -12.84171 -12.63510 -12.20176 -11.59070 -11.48863 -11.21702 -11.20905 -10.93618 -10.66262 -10.40202 -10.30208 -9.95889 -9.82975 -9.77378 -9.74160 -9.40809 -8.82908 -8.44488 -6.17200 -4.23764 0.38979 0.67009 2.74471 3.16710 3.29815 3.32684 3.38529 3.68050 3.88818 4.24652 4.33835 4.44212 4.67160 4.80387 5.13603 5.15823 5.21572 5.25049 5.59136 5.69603 5.87275 6.03219 6.20366 6.27502 6.41969 6.82077 6.91146 7.13517 7.15708 7.59356 7.71385 7.87040 8.14121 8.44593 8.61572 8.87227 9.41018 10.89719 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.005351 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.687613 B = 5231.245249 C = 5763.947424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.219 3.781 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.071 0.929 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.913 3.087 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.326 6.326 14 C 0.515 3.485 15 O -0.502 6.502 16 C 0.042 3.958 17 C -0.063 4.063 18 C -0.128 4.128 19 C 0.078 3.922 20 C -0.102 4.102 21 N -0.245 5.245 22 N -0.173 5.173 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.111 0.889 27 H 0.044 0.956 28 H 0.267 0.733 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 7.798 11.110 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.240 6.240 14 C 0.355 3.645 15 O -0.391 6.391 16 C -0.103 4.103 17 C -0.091 4.091 18 C -0.157 4.157 19 C -0.065 4.065 20 C -0.160 4.160 21 N -0.091 5.091 22 N -0.019 5.019 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.129 0.871 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.695 7.163 11.278 16.508 hybrid contribution -0.525 0.352 -0.990 1.175 sum -10.220 7.516 10.288 16.333 Atomic orbital electron populations 1.21872 0.98478 0.99183 1.00559 1.22043 0.92559 0.99212 1.03655 1.20836 0.95366 0.88878 0.78232 0.93289 1.21014 0.89465 1.39049 1.06335 0.91108 1.24873 0.99313 0.94677 0.94981 1.69880 1.35500 1.37832 1.09517 0.86312 0.83760 0.78527 0.77444 1.19851 1.21058 1.19970 1.86669 1.32184 1.61126 1.44008 1.20205 0.81810 0.77035 0.85415 1.90807 1.55776 1.58663 1.33823 1.22191 0.93869 0.99227 0.95000 1.22466 0.95013 0.92021 0.99614 1.22252 1.01338 0.99614 0.92487 1.23166 0.91800 0.94233 0.97294 1.20723 1.03198 1.00023 0.92036 1.73258 1.13820 1.05665 1.16315 1.73540 1.25149 1.08544 0.94716 0.95210 0.92720 0.94613 0.87080 0.93694 0.92328 0.81808 0.82540 0.89555 0.89641 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.56 37.16 0.32 -2.84 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 5.91 2.25 -27.88 -0.06 5.85 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.83 8.90 -34.44 -0.31 -15.13 16 6 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.33 -8.16 9.64 -40.44 -0.39 -8.55 16 14 C 0.51 11.22 6.41 34.76 0.22 11.44 16 15 O -0.50 -11.30 13.58 -19.22 -0.26 -11.56 16 16 C 0.04 0.75 6.83 -82.85 -0.57 0.19 16 17 C -0.06 -0.83 9.73 -38.80 -0.38 -1.20 16 18 C -0.13 -1.27 9.86 -39.24 -0.39 -1.66 16 19 C 0.08 0.88 6.87 -82.32 -0.57 0.32 16 20 C -0.10 -0.69 10.19 36.00 0.37 -0.32 16 21 N -0.25 -3.90 11.43 33.63 0.38 -3.51 16 22 N -0.17 -3.26 11.31 33.31 0.38 -2.89 16 23 H 0.03 0.63 6.06 -51.93 -0.31 0.32 16 24 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 27 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.16 1.87 7.72 -52.49 -0.41 1.46 16 30 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 LS Contribution 288.00 15.07 4.34 4.34 Total: -1.00 -31.90 288.00 -5.43 -37.33 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.88 Total: -1.70 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.60 Total: -5.28 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 1.39 Total: -30.88 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.65 Total: -20.11 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.90 -5.43 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.286 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds