Wall clock time and date at job start Sun Mar 29 2020 23:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34517 * 125.78960 * 2 1 4 4 C 1.41379 * 106.83879 * 179.74689 * 3 2 1 5 5 C 1.34518 * 106.84182 * 0.37087 * 4 3 2 6 6 C 1.50702 * 125.78872 * 179.88904 * 5 4 3 7 7 N 1.46899 * 109.47342 * 89.71668 * 6 5 4 8 8 C 1.46895 * 110.99989 * 190.00093 * 7 6 5 9 9 C 1.53241 * 109.33538 * 187.25118 * 8 7 6 10 10 N 1.47082 * 108.52509 * 306.16899 * 9 8 7 11 11 C 1.36935 * 120.87800 * 231.18634 * 10 9 8 12 12 H 1.07994 * 120.00243 * 27.12925 * 11 10 9 13 13 C 1.38815 * 119.99552 * 206.84012 * 11 10 9 14 14 N 1.31614 * 119.99986 * 17.18837 * 13 11 10 15 15 Si 1.86797 * 120.00057 * 197.17547 * 13 11 10 16 16 H 1.48508 * 109.47149 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47196 * 120.00464 * 15 13 11 18 18 H 1.48497 * 109.47565 * 240.00842 * 15 13 11 19 19 C 1.47072 * 118.23374 * 51.45730 * 10 9 8 20 20 C 1.46908 * 110.99894 * 314.30181 * 7 6 5 21 21 O 1.34298 * 108.41944 * 359.62627 * 5 4 3 22 22 H 1.08995 * 109.47412 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47189 * 300.00430 * 1 2 3 24 24 H 1.09007 * 109.46954 * 60.00246 * 1 2 3 25 25 H 1.07995 * 126.58042 * 359.97438 * 3 2 1 26 26 H 1.08005 * 126.58047 * 180.23070 * 4 3 2 27 27 H 1.09004 * 109.46889 * 329.71363 * 6 5 4 28 28 H 1.08999 * 109.46899 * 209.71591 * 6 5 4 29 29 H 1.08994 * 109.49506 * 67.29451 * 8 7 6 30 30 H 1.08997 * 109.49438 * 307.21030 * 8 7 6 31 31 H 1.09003 * 109.62622 * 186.45689 * 9 8 7 32 32 H 1.09001 * 109.79122 * 65.97420 * 9 8 7 33 33 H 0.97002 * 120.00194 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.62781 * 68.25550 * 19 10 9 35 35 H 1.09007 * 109.62956 * 188.83247 * 19 10 9 36 36 H 1.09005 * 109.49135 * 292.70628 * 20 7 6 37 37 H 1.09003 * 109.49306 * 52.75396 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 0.0060 5 6 3.5813 -0.7122 0.0009 6 6 4.7706 -1.6379 0.0021 7 7 5.1560 -1.9383 1.3874 8 6 6.4455 -2.6403 1.4346 9 6 6.7239 -3.0940 2.8716 10 7 6.6189 -1.9258 3.7591 11 6 7.6193 -1.6232 4.6438 12 1 8.6354 -1.9221 4.4329 13 6 7.3282 -0.9269 5.8089 14 7 6.0860 -0.8506 6.2370 15 14 8.6996 -0.0986 6.7693 16 1 9.9955 -0.3310 6.0822 17 1 8.4367 1.3608 6.8488 18 1 8.7570 -0.6666 8.1401 19 6 5.4082 -1.0950 3.6753 20 6 5.1842 -0.7166 2.2027 21 8 2.2924 -1.0894 0.0006 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.9666 2.1204 -0.0004 26 1 4.5212 1.2433 0.0111 27 1 5.6043 -1.1589 -0.5114 28 1 4.5109 -2.5635 -0.5117 29 1 7.2379 -1.9680 1.1055 30 1 6.4103 -3.5102 0.7788 31 1 7.7282 -3.5130 2.9351 32 1 5.9937 -3.8466 3.1690 33 1 5.8825 -0.3638 7.0510 34 1 4.5516 -1.6578 4.0463 35 1 5.5420 -0.1917 4.2706 36 1 5.9941 -0.0711 1.8628 37 1 4.2343 -0.1911 2.1035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:32 Heat of formation + Delta-G solvation = 28.389491 kcal Electronic energy + Delta-G solvation = -18626.433805 eV Core-core repulsion = 15791.528946 eV Total energy + Delta-G solvation = -2834.904859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.56659 -39.69651 -36.42883 -34.11281 -33.75293 -32.47877 -31.61343 -29.84762 -27.52695 -25.55449 -24.29077 -23.64081 -22.66988 -21.07609 -20.81412 -18.78432 -17.50417 -17.44100 -16.82126 -16.07155 -15.92351 -15.62048 -15.33999 -14.95471 -14.93909 -14.64472 -14.01564 -13.74345 -13.71054 -13.48943 -13.13808 -13.09150 -12.92132 -12.66174 -12.59107 -12.27514 -12.07299 -11.90517 -11.66354 -11.46381 -10.74749 -10.61756 -9.44231 -9.09929 -8.70834 -7.89153 -5.34736 0.72615 1.45532 1.46778 1.58016 1.64192 2.00517 2.49815 3.04956 3.26839 3.66144 3.68558 4.01662 4.12116 4.20000 4.28935 4.33414 4.42748 4.55132 4.61805 4.64011 4.69424 4.74757 4.86389 4.89059 4.93376 4.99672 5.08911 5.16108 5.29620 5.33788 5.59640 5.62526 5.64610 6.07666 6.15929 6.26856 6.35541 7.10685 7.81299 8.36545 9.18233 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030199 B = 0.005503 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.967253 B = 5086.523392 C = 5571.773338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.026 4.026 3 C -0.225 4.225 4 C -0.211 4.211 5 C -0.021 4.021 6 C 0.134 3.866 7 N -0.544 5.544 8 C 0.056 3.944 9 C 0.142 3.858 10 N -0.614 5.614 11 C -0.264 4.264 12 H 0.072 0.928 13 C -0.053 4.053 14 N -0.939 5.939 15 Si 0.970 3.030 16 H -0.264 1.264 17 H -0.290 1.290 18 H -0.291 1.291 19 C 0.188 3.812 20 C 0.054 3.946 21 O -0.187 6.187 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.167 0.833 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.014 0.986 33 H 0.250 0.750 34 H -0.009 1.009 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 2.030 -15.502 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.244 4.244 4 C -0.231 4.231 5 C -0.071 4.071 6 C 0.008 3.992 7 N -0.270 5.270 8 C -0.073 4.073 9 C 0.016 3.984 10 N -0.338 5.338 11 C -0.394 4.394 12 H 0.089 0.911 13 C -0.248 4.248 14 N -0.585 5.585 15 Si 0.798 3.202 16 H -0.188 1.188 17 H -0.217 1.217 18 H -0.218 1.218 19 C 0.062 3.938 20 C -0.075 4.075 21 O -0.084 6.084 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.185 0.815 26 H 0.168 0.832 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.009 0.991 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.713 1.466 -15.176 17.086 hybrid contribution 1.189 1.156 0.734 1.813 sum -6.524 2.622 -14.441 16.062 Atomic orbital electron populations 1.20474 0.82452 1.04724 1.05045 1.23253 0.95683 0.83763 1.04881 1.21827 0.92204 1.00508 1.09892 1.21817 0.99134 0.93941 1.08194 1.22378 0.83243 0.94711 1.06813 1.20622 0.90331 0.98019 0.90268 1.62042 1.31515 1.24006 1.09431 1.22518 0.88183 0.98454 0.98133 1.21163 0.98912 0.88914 0.89376 1.44447 1.19278 1.27547 1.42556 1.19618 0.88686 1.32852 0.98288 0.91078 1.25842 0.98438 1.03101 0.97398 1.70212 1.19625 1.45297 1.23389 0.85167 0.79299 0.77752 0.77995 1.18838 1.21655 1.21825 1.20660 0.86960 0.94504 0.91648 1.22680 0.99282 0.90665 0.94863 1.83963 1.16730 1.36158 1.71567 0.90315 0.88542 0.87507 0.81533 0.83236 0.90518 0.87763 0.94889 0.87955 0.91488 0.96793 0.94071 0.99070 0.92572 0.95861 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.42 71.24 0.74 -0.39 16 2 C -0.03 -0.66 7.32 24.83 0.18 -0.48 16 3 C -0.23 -5.79 10.81 22.19 0.24 -5.55 16 4 C -0.21 -6.07 9.09 22.19 0.20 -5.86 16 5 C -0.02 -0.65 5.50 24.83 0.14 -0.52 16 6 C 0.13 3.82 5.81 85.56 0.50 4.32 16 7 N -0.54 -19.72 4.77 -898.88 -4.29 -24.01 16 8 C 0.06 1.91 5.58 86.38 0.48 2.39 16 9 C 0.14 6.10 6.69 86.35 0.58 6.68 16 10 N -0.61 -32.44 3.03 -697.26 -2.11 -34.55 16 11 C -0.26 -14.96 9.63 84.03 0.81 -14.15 16 12 H 0.07 3.87 7.88 -2.91 -0.02 3.84 16 13 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 14 N -0.94 -57.48 11.16 21.65 0.24 -57.24 16 15 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 19 C 0.19 9.86 5.45 86.50 0.47 10.33 16 20 C 0.05 2.26 4.95 86.53 0.43 2.69 16 21 O -0.19 -5.86 10.65 -2.44 -0.03 -5.89 16 22 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 26 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 27 H 0.08 1.92 8.08 -2.38 -0.02 1.90 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 2.75 8.11 -2.39 -0.02 2.73 16 31 H 0.07 2.69 7.95 -2.39 -0.02 2.67 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.06 3.26 6.12 -2.38 -0.01 3.25 16 36 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.07 2.86 5.55 -2.39 -0.01 2.85 16 Total: -1.00 -69.22 299.95 2.07 -67.15 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.04 Total: 10.08 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.19 Total: -3.15 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -6.16 Total: -115.81 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.03 Total: -5.89 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.22 2.07 -67.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.537 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds