Wall clock time and date at job start Sun Mar 29 2020 23:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36768 * 125.80411 * 2 1 4 4 C 1.47263 * 126.93911 * 359.97436 * 3 2 1 5 5 O 1.21623 * 120.00126 * 359.71320 * 4 3 2 6 6 N 1.34777 * 119.99630 * 179.71006 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72408 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00298 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99907 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99860 * 14 12 10 16 16 H 1.48503 * 109.47098 * 209.99926 * 14 12 10 17 17 H 1.48504 * 109.46915 * 329.99781 * 14 12 10 18 18 C 1.46690 * 106.11787 * 179.71569 * 3 2 1 19 19 C 1.34493 * 106.32943 * 0.25821 * 18 3 2 20 20 N 1.34664 * 125.79869 * 180.16205 * 2 1 3 21 21 C 1.46499 * 124.85268 * 0.02562 * 20 2 1 22 22 H 1.09002 * 109.47222 * 90.00112 * 1 2 3 23 23 H 1.09006 * 109.47580 * 210.00227 * 1 2 3 24 24 H 1.09000 * 109.47476 * 330.00106 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 26 26 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 27 27 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 28 28 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 29 29 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 30 30 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 31 31 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 32 32 H 0.96997 * 120.00401 * 179.97438 * 13 12 10 33 33 H 1.07994 * 126.83697 * 180.29986 * 18 3 2 34 34 H 1.08002 * 125.56840 * 180.02562 * 19 18 3 35 35 H 1.09003 * 109.47017 * 270.30988 * 21 20 2 36 36 H 1.08993 * 109.47396 * 30.31257 * 21 20 2 37 37 H 1.09001 * 109.47185 * 150.31452 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0063 6 7 2.7850 3.5053 0.0055 7 6 2.3505 4.9043 -0.0012 8 6 3.5768 5.8193 0.0007 9 6 3.1229 7.2804 -0.0069 10 6 4.3308 8.1816 -0.0045 11 1 5.3229 7.7549 0.0014 12 6 4.1694 9.5509 -0.0098 13 7 5.2234 10.3373 -0.0082 14 14 2.4534 10.2890 -0.0193 15 1 1.9930 10.4893 1.3783 16 1 2.4806 11.5960 -0.7236 17 1 1.5224 9.3683 -0.7200 18 6 3.6882 0.6151 0.0070 19 6 3.6095 -0.7275 0.0048 20 7 2.2947 -1.0922 -0.0031 21 6 1.8093 -2.4745 -0.0075 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 3.7311 3.2914 0.0097 26 1 1.7556 5.0959 -0.8943 27 1 1.7484 5.1021 0.8856 28 1 4.1715 5.6278 0.8937 29 1 4.1789 5.6217 -0.8863 30 1 2.5284 7.4716 -0.9002 31 1 2.5206 7.4784 0.8798 32 1 5.1099 11.3006 -0.0123 33 1 4.5890 1.2108 0.0134 34 1 4.4497 -1.4061 0.0089 35 1 1.6833 -2.8186 1.0190 36 1 0.8521 -2.5218 -0.5267 37 1 2.5315 -3.1115 -0.5182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195233024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:10 Heat of formation + Delta-G solvation = -6.961532 kcal Electronic energy + Delta-G solvation = -17419.481048 eV Core-core repulsion = 14583.043253 eV Total energy + Delta-G solvation = -2836.437795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47188 -38.86480 -35.35517 -33.35530 -32.88411 -31.70880 -31.28431 -27.80816 -26.53437 -26.15698 -23.12083 -21.80752 -20.48538 -19.93781 -18.90289 -17.46074 -16.70989 -15.87751 -15.62112 -15.40547 -15.07914 -14.32400 -14.01937 -13.81847 -13.31311 -13.19708 -13.07978 -12.81739 -12.72595 -12.61154 -12.24954 -11.89506 -11.82708 -11.63410 -10.98354 -10.83282 -10.09043 -9.87212 -9.70547 -9.42913 -9.16890 -8.83623 -8.61477 -8.50867 -8.23357 -6.01830 -4.00091 1.73715 2.30696 2.59284 3.35277 3.42435 3.47656 3.71291 3.74283 4.39233 4.48937 4.58932 4.73302 4.75224 4.97100 5.06716 5.22968 5.32501 5.42840 5.51287 5.68055 5.78146 5.78569 5.87618 6.09668 6.13489 6.52390 6.55461 6.65148 6.82416 6.90304 6.94903 7.06248 7.30314 7.43749 7.80184 7.94012 8.55178 8.62692 9.02483 9.60737 11.11518 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.051001 B = 0.003499 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.876938 B = 7999.542841 C = 8512.046830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.100 3.900 3 C -0.233 4.233 4 C 0.586 3.414 5 O -0.558 6.558 6 N -0.722 5.722 7 C 0.117 3.883 8 C -0.113 4.113 9 C -0.011 4.011 10 C -0.520 4.520 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.166 4.166 19 C -0.021 4.021 20 N -0.448 5.448 21 C 0.069 3.931 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.399 0.601 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 -27.022 -0.021 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.016 4.016 3 C -0.242 4.242 4 C 0.375 3.625 5 O -0.438 6.438 6 N -0.372 5.372 7 C -0.006 4.006 8 C -0.151 4.151 9 C -0.049 4.049 10 C -0.558 4.558 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.188 1.188 18 C -0.190 4.190 19 C -0.147 4.147 20 N -0.125 5.125 21 C -0.073 4.073 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.121 0.879 25 H 0.233 0.767 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.918 -26.963 -0.029 27.836 hybrid contribution -0.097 0.343 0.012 0.356 sum -7.015 -26.620 -0.018 27.529 Atomic orbital electron populations 1.20551 0.87163 1.04023 1.03280 1.20318 0.93741 0.85162 1.02389 1.20224 0.93206 0.92204 1.18613 1.17354 0.85421 0.84036 0.75728 1.90707 1.16748 1.84549 1.51843 1.45921 1.09648 1.06561 1.75046 1.21603 0.98445 0.78832 1.01767 1.21699 0.95459 0.96274 1.01689 1.19505 0.97539 0.91251 0.96635 1.21120 0.93241 0.90644 1.50841 0.91010 1.25030 0.96739 0.97238 0.94519 1.69914 1.29220 1.04006 1.51224 0.86772 0.85375 0.78568 0.78572 1.20260 1.21429 1.18846 1.22066 0.95927 0.93570 1.07405 1.21671 0.85325 0.96263 1.11461 1.43539 1.06061 1.06025 1.56919 1.22067 1.01664 0.80189 1.03400 0.90616 0.92153 0.87944 0.76733 0.91924 0.91923 0.92162 0.92145 0.96310 0.96751 0.92747 0.83563 0.81652 0.90793 0.89717 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.26 36.00 0.33 -0.62 16 2 C 0.10 1.20 6.89 -81.88 -0.56 0.63 16 3 C -0.23 -3.24 6.29 -103.35 -0.65 -3.89 16 4 C 0.59 9.74 7.81 -12.59 -0.10 9.65 16 5 O -0.56 -10.80 14.82 5.26 0.08 -10.72 16 6 N -0.72 -11.33 5.55 -61.43 -0.34 -11.67 16 7 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 8 C -0.11 -2.22 5.27 -26.73 -0.14 -2.36 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 14 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 C -0.17 -1.85 10.56 -37.49 -0.40 -2.25 16 19 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 20 N -0.45 -4.12 3.09 -119.88 -0.37 -4.49 16 21 C 0.07 0.32 10.60 59.85 0.63 0.96 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.45 7.59 -51.93 -0.39 0.05 16 24 H 0.10 1.30 6.47 -51.93 -0.34 0.96 16 25 H 0.40 5.30 7.60 -40.82 -0.31 4.99 16 26 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 31 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.15 1.37 7.69 -52.49 -0.40 0.97 16 34 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.32 7.51 -51.93 -0.39 -0.07 16 37 H 0.09 0.25 8.13 -51.93 -0.42 -0.17 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -34.90 311.47 -7.04 -41.95 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.57 Total: 0.25 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.64 Total: -10.04 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.06 Total: -43.58 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.90 -7.04 -41.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195233024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.984 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds