Wall clock time and date at job start Sun Mar 29 2020 22:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00106 * 2 1 4 4 C 1.50701 * 109.47150 * 179.97438 * 3 2 1 5 5 C 1.38166 * 119.97212 * 359.97438 * 4 3 2 6 6 C 1.38707 * 119.94172 * 180.02562 * 5 4 3 7 7 O 1.35900 * 120.05163 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99943 * 180.02562 * 7 6 5 9 9 C 1.38746 * 119.89073 * 0.02562 * 6 5 4 10 10 C 1.38126 * 119.94556 * 359.97438 * 9 6 5 11 11 C 1.38244 * 119.96874 * 180.29225 * 4 3 2 12 12 C 1.50696 * 119.94672 * 0.02562 * 11 4 3 13 13 C 1.53002 * 109.47141 * 85.24992 * 12 11 4 14 14 C 1.50701 * 109.46731 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99643 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99983 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99851 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47248 * 90.00430 * 18 16 14 20 20 H 1.48500 * 109.47092 * 210.00139 * 18 16 14 21 21 H 1.48498 * 109.47378 * 329.99956 * 18 16 14 22 22 H 1.09004 * 109.47097 * 60.00064 * 1 2 3 23 23 H 1.08998 * 109.47490 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47320 * 300.00291 * 1 2 3 25 25 H 1.09001 * 109.46912 * 59.99566 * 3 2 1 26 26 H 1.09003 * 109.46840 * 299.99780 * 3 2 1 27 27 H 1.08007 * 120.02833 * 0.04906 * 5 4 3 28 28 H 1.09002 * 109.46947 * 300.00698 * 8 7 6 29 29 H 1.08998 * 109.47276 * 60.00138 * 8 7 6 30 30 H 1.08997 * 109.47389 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.02788 * 179.97438 * 9 6 5 32 32 H 1.08002 * 119.97098 * 179.97438 * 10 9 6 33 33 H 1.09002 * 109.46747 * 205.24539 * 12 11 4 34 34 H 1.08998 * 109.47192 * 325.24825 * 12 11 4 35 35 H 1.08993 * 109.47151 * 299.99426 * 13 12 11 36 36 H 1.08998 * 109.47214 * 59.99846 * 13 12 11 37 37 H 0.96999 * 119.99546 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1061 -0.0612 0.0016 6 6 5.4889 -0.1700 0.0028 7 8 6.0751 -1.3961 0.0043 8 6 7.5037 -1.4322 0.0059 9 6 6.2726 0.9750 0.0034 10 6 5.6744 2.2199 0.0024 11 6 4.2955 2.3258 0.0069 12 6 3.6455 3.6853 0.0136 13 6 3.3171 4.0865 1.4531 14 6 2.6675 5.4463 1.4598 15 1 2.5049 5.9717 0.5303 16 6 2.2800 6.0193 2.6525 17 7 2.4777 5.3793 3.7843 18 14 1.4743 7.7046 2.6608 19 1 0.0021 7.5500 2.5429 20 1 1.7986 8.4021 3.9310 21 1 1.9816 8.5015 1.5150 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.4939 -0.9510 0.0012 28 1 7.8809 -0.9281 -0.8839 29 1 7.8789 -0.9271 0.8960 30 1 7.8410 -2.4686 0.0066 31 1 7.3495 0.8928 0.0047 32 1 6.2840 3.1115 0.0033 33 1 4.3276 4.4163 -0.4207 34 1 2.7273 3.6519 -0.5728 35 1 2.6350 3.3556 1.8873 36 1 4.2353 4.1199 2.0394 37 1 2.2054 5.7827 4.6234 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:04 Heat of formation + Delta-G solvation = -75.526172 kcal Electronic energy + Delta-G solvation = -18038.795605 eV Core-core repulsion = 15167.091874 eV Total energy + Delta-G solvation = -2871.703732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97054 -38.16898 -36.92381 -33.81037 -31.90111 -31.44068 -29.01010 -27.35300 -26.73135 -25.14914 -24.66594 -21.96631 -21.11755 -19.83958 -17.67459 -16.58169 -16.40972 -15.66588 -15.47013 -15.35052 -14.88648 -14.72255 -14.45890 -13.62945 -13.35805 -13.00784 -12.64512 -12.43835 -12.31980 -12.03324 -11.75607 -11.52142 -11.26808 -10.99251 -10.94869 -10.51886 -10.49709 -10.45041 -9.87437 -9.54796 -9.49730 -9.09226 -8.39705 -8.35282 -7.57301 -6.01181 -4.04589 1.67667 1.86428 3.30242 3.37005 3.40016 3.46009 3.95453 4.11667 4.44636 5.01596 5.11355 5.17100 5.28934 5.34078 5.36494 5.45658 5.49867 5.58314 5.66398 5.76814 5.79166 5.80686 5.92573 5.99392 6.29393 6.48340 6.60523 6.67056 6.79066 6.92677 7.10599 7.14297 7.43012 7.67257 7.68888 7.80148 7.98964 8.38951 9.02692 9.59639 11.09614 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020820 B = 0.005611 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.529012 B = 4989.184299 C = 5945.962196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.101 3.899 4 C -0.051 4.051 5 C -0.127 4.127 6 C 0.103 3.897 7 O -0.322 6.322 8 C 0.030 3.970 9 C -0.206 4.206 10 C -0.083 4.083 11 C -0.088 4.088 12 C -0.079 4.079 13 C 0.030 3.970 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.135 0.865 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -11.290 -8.288 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.025 3.975 4 C -0.051 4.051 5 C -0.145 4.145 6 C 0.058 3.942 7 O -0.236 6.236 8 C -0.065 4.065 9 C -0.225 4.225 10 C -0.101 4.101 11 C -0.088 4.088 12 C -0.116 4.116 13 C -0.007 4.007 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.094 -11.625 -8.094 14.745 hybrid contribution -0.307 1.325 0.213 1.377 sum 3.787 -10.300 -7.881 13.511 Atomic orbital electron populations 1.22707 0.81097 1.02303 1.00305 1.87797 1.19566 1.28168 1.95595 1.21386 0.89847 0.84250 1.01971 1.19269 0.93964 0.92253 0.99639 1.20121 0.91010 0.98299 1.05118 1.18903 0.92476 0.83576 0.99203 1.86029 1.21322 1.26799 1.89432 1.22961 0.79199 1.03215 1.01167 1.21142 0.99341 0.92591 1.09380 1.20784 0.94136 0.96601 0.98562 1.19990 0.93249 0.95898 0.99657 1.20806 0.98806 0.90292 1.01690 1.19072 0.96893 0.95929 0.88843 1.21254 1.39414 1.02703 0.92731 0.92604 1.25020 0.95993 0.97646 0.95673 1.69975 1.47475 1.38128 0.97670 0.86616 0.79689 0.84386 0.77446 1.20680 1.21231 1.19853 0.94177 0.89934 0.93713 0.90159 0.91732 0.84739 0.93008 0.92863 0.88761 0.86069 0.85739 0.92171 0.92329 0.96434 0.96403 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.33 9.18 -35.23 -0.32 -6.66 16 3 C 0.10 1.74 5.10 36.01 0.18 1.92 16 4 C -0.05 -0.93 5.88 -104.65 -0.62 -1.55 16 5 C -0.13 -2.23 9.32 -39.43 -0.37 -2.60 16 6 C 0.10 1.69 6.69 -39.22 -0.26 1.43 16 7 O -0.32 -4.77 10.50 -19.42 -0.20 -4.98 16 8 C 0.03 0.30 9.81 101.05 0.99 1.30 16 9 C -0.21 -3.21 9.04 -39.43 -0.36 -3.57 16 10 C -0.08 -1.42 9.67 -39.60 -0.38 -1.80 16 11 C -0.09 -1.66 5.13 -104.60 -0.54 -2.19 16 12 C -0.08 -1.62 4.78 -27.88 -0.13 -1.75 16 13 C 0.03 0.76 4.94 -27.88 -0.14 0.62 16 14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.52 6.77 -51.93 -0.35 1.17 16 26 H 0.06 1.03 7.52 -51.93 -0.39 0.64 16 27 H 0.13 2.31 7.00 -52.48 -0.37 1.94 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 1.54 6.30 -52.49 -0.33 1.20 16 32 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.06 1.15 6.83 -51.93 -0.35 0.79 16 35 H 0.02 0.47 6.80 -51.93 -0.35 0.12 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -31.33 309.17 -6.51 -37.84 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.44 Total: -1.30 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.92 Total: -19.95 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.53 Total: -11.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.33 -6.51 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.688 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds