Wall clock time and date at job start Sun Mar 29 2020 23:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34478 * 125.57516 * 2 1 4 4 C 1.46690 * 106.33244 * 180.02562 * 3 2 1 5 5 C 1.47265 * 126.94200 * 180.02562 * 4 3 2 6 6 O 1.21628 * 120.00319 * 180.30055 * 5 4 3 7 7 N 1.34784 * 119.99868 * 0.02939 * 5 4 3 8 8 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47257 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00042 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99907 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00039 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47328 * 90.00044 * 14 12 10 16 16 H 1.48506 * 109.46776 * 209.99936 * 14 12 10 17 17 H 1.48498 * 109.46978 * 329.99647 * 14 12 10 18 18 C 1.36760 * 106.11650 * 0.26441 * 4 3 2 19 19 C 1.50700 * 125.80347 * 179.69693 * 18 4 3 20 20 N 1.34660 * 108.39807 * 359.57273 * 18 4 3 21 21 C 1.46497 * 124.85322 * 180.16768 * 20 18 4 22 22 H 1.09005 * 109.46719 * 89.97138 * 1 2 3 23 23 H 1.08996 * 109.47473 * 209.97182 * 1 2 3 24 24 H 1.08997 * 109.47182 * 329.97683 * 1 2 3 25 25 H 1.07997 * 126.83600 * 0.02562 * 3 2 1 26 26 H 0.96999 * 120.00044 * 359.97438 * 7 5 4 27 27 H 1.09004 * 109.47024 * 300.00310 * 8 7 5 28 28 H 1.09005 * 109.47136 * 59.99926 * 8 7 5 29 29 H 1.09004 * 109.47330 * 300.00096 * 9 8 7 30 30 H 1.09005 * 109.47124 * 59.99892 * 9 8 7 31 31 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.47065 * 90.02579 * 19 18 4 33 33 H 1.08992 * 109.47506 * 210.02404 * 19 18 4 34 34 H 1.09002 * 109.47252 * 330.03286 * 19 18 4 35 35 H 1.08999 * 109.47627 * 270.33837 * 21 20 18 36 36 H 1.08998 * 109.47178 * 30.33823 * 21 20 18 37 37 H 1.09006 * 109.46908 * 150.33850 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6103 -0.0006 5 6 4.8978 1.4299 -0.0003 6 8 5.9893 0.8933 -0.0065 7 7 4.8081 2.7747 0.0012 8 6 6.0253 3.5901 0.0021 9 6 5.6462 5.0723 0.0044 10 6 6.8983 5.9110 0.0047 11 1 7.8675 5.4344 0.0029 12 6 6.8066 7.2867 0.0061 13 7 7.8992 8.0186 0.0069 14 14 5.1302 8.1110 0.0085 15 1 4.6873 8.3280 1.4091 16 1 5.2205 9.4182 -0.6903 17 1 4.1504 7.2420 -0.6915 18 6 3.5997 -0.7552 -0.0070 19 6 4.7720 -1.7021 -0.0165 20 7 2.3007 -1.1099 -0.0006 21 6 1.8097 -2.4902 -0.0010 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5142 25 1 1.9630 2.1233 0.0004 26 1 3.9377 3.2028 0.0017 27 1 6.6132 3.3643 0.8918 28 1 6.6131 3.3664 -0.8882 29 1 5.0581 5.2984 -0.8851 30 1 5.0586 5.2957 0.8949 31 1 7.8346 8.9864 0.0083 32 1 5.0586 -1.9358 1.0089 33 1 4.4935 -2.6200 -0.5340 34 1 5.6120 -1.2353 -0.5310 35 1 1.6880 -2.8324 -1.0287 36 1 2.5265 -3.1309 0.5127 37 1 0.8494 -2.5343 0.5128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345149525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:44 Heat of formation + Delta-G solvation = -30.841054 kcal Electronic energy + Delta-G solvation = -17740.348514 eV Core-core repulsion = 14902.875226 eV Total energy + Delta-G solvation = -2837.473289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.39058 -40.12438 -36.58747 -34.80046 -33.80203 -33.54546 -31.94347 -29.99172 -28.03898 -26.46798 -25.53295 -23.04565 -22.47172 -20.99175 -19.70151 -18.97155 -17.93307 -16.78919 -16.56156 -16.47961 -16.20525 -16.13546 -15.14999 -14.81409 -14.68851 -14.32226 -14.14117 -13.99923 -13.82356 -13.45894 -13.34100 -13.14381 -13.03158 -12.96287 -12.52424 -12.37415 -12.14761 -12.12754 -11.75730 -11.51540 -10.81094 -10.78378 -10.04998 -9.49210 -8.92833 -8.29808 -6.36987 0.75284 1.39174 1.41984 1.44241 1.53710 1.87076 2.37558 2.53646 2.59326 3.04958 3.82693 3.88677 3.94703 4.18035 4.26878 4.40580 4.43642 4.45032 4.55538 4.65279 4.71709 4.74251 4.75759 4.85315 4.93204 5.07128 5.15655 5.16598 5.35759 5.40502 5.47011 5.68103 5.83762 6.13113 6.23071 6.38669 6.68053 6.78130 7.27342 7.40712 8.87096 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033593 B = 0.004356 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.304526 B = 6426.428230 C = 7223.374304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.015 3.985 3 C -0.188 4.188 4 C -0.268 4.268 5 C 0.578 3.422 6 O -0.597 6.597 7 N -0.715 5.715 8 C 0.147 3.853 9 C -0.011 4.011 10 C -0.540 4.540 11 H 0.029 0.971 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.959 3.041 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.239 1.239 18 C 0.094 3.906 19 C -0.088 4.088 20 N -0.438 5.438 21 C 0.056 3.944 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.155 0.845 26 H 0.409 0.591 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.268 0.732 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.835 -21.852 0.028 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.211 4.211 4 C -0.278 4.278 5 C 0.369 3.631 6 O -0.480 6.480 7 N -0.366 5.366 8 C 0.024 3.976 9 C -0.049 4.049 10 C -0.578 4.578 11 H 0.047 0.953 12 C -0.192 4.192 13 N -0.590 5.590 14 Si 0.781 3.219 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.162 1.162 18 C -0.024 4.024 19 C -0.145 4.145 20 N -0.114 5.114 21 C -0.084 4.084 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.172 0.828 26 H 0.245 0.755 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.161 -22.377 0.025 30.798 hybrid contribution 0.095 1.144 0.014 1.148 sum -21.066 -21.232 0.039 29.910 Atomic orbital electron populations 1.20437 0.84811 1.04606 1.03752 1.20766 0.95180 0.84934 1.08490 1.22022 0.90020 0.99113 1.09948 1.20158 0.92894 0.93230 1.21476 1.17912 0.88321 0.81967 0.74894 1.90669 1.30463 1.73140 1.53766 1.45846 1.10215 1.05733 1.74772 1.21003 0.86163 0.90720 0.99753 1.19637 0.96347 0.91004 0.97911 1.21249 0.92941 0.91982 1.51615 0.95274 1.26076 1.01623 0.97930 0.93599 1.70077 1.30788 1.06193 1.51973 0.85532 0.79147 0.77783 0.79401 1.18877 1.20966 1.16230 1.20458 0.86154 0.93740 1.02025 1.20496 0.93402 0.97075 1.03536 1.43729 1.04083 1.08149 1.55489 1.22443 1.02806 0.78136 1.04985 0.89911 0.89810 0.89274 0.82783 0.75517 0.93945 0.93953 0.94648 0.94762 0.92272 0.90224 0.88876 0.90961 0.89250 0.88491 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.06 71.24 0.72 -0.06 16 2 C 0.01 0.28 6.85 40.98 0.28 0.56 16 3 C -0.19 -4.63 10.45 23.62 0.25 -4.39 16 4 C -0.27 -8.40 6.29 -19.04 -0.12 -8.52 16 5 C 0.58 22.55 7.81 86.62 0.68 23.23 16 6 O -0.60 -27.13 14.81 -4.12 -0.06 -27.19 16 7 N -0.72 -27.05 5.55 -466.51 -2.59 -29.64 16 8 C 0.15 6.68 5.61 86.38 0.48 7.16 16 9 C -0.01 -0.54 4.15 29.85 0.12 -0.41 16 10 C -0.54 -32.10 9.66 25.60 0.25 -31.86 16 11 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 12 C 0.00 0.28 5.47 84.65 0.46 0.75 16 13 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 14 Si 0.96 43.69 27.47 68.60 1.88 45.57 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 18 C 0.09 2.44 6.89 41.78 0.29 2.73 16 19 C -0.09 -1.99 9.26 71.24 0.66 -1.33 16 20 N -0.44 -8.12 3.09 -518.64 -1.60 -9.72 16 21 C 0.06 0.45 10.39 127.77 1.33 1.78 16 22 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 23 H 0.08 0.48 6.94 -2.39 -0.02 0.46 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.15 3.28 7.69 -2.91 -0.02 3.25 16 26 H 0.41 12.94 7.60 -92.71 -0.70 12.24 16 27 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.04 1.60 7.20 -2.38 -0.02 1.58 16 30 H 0.03 1.53 7.57 -2.38 -0.02 1.51 16 31 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.39 7.59 -2.39 -0.02 1.37 16 34 H 0.07 2.12 6.47 -2.39 -0.02 2.11 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.58 7.51 -2.39 -0.02 0.56 16 37 H 0.11 0.38 6.90 -2.38 -0.02 0.36 16 Total: -1.00 -79.13 309.15 3.63 -75.50 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.31 Total: 16.09 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.39 Total: -10.36 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -3.89 Total: -99.62 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -79.13 3.63 -75.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345149525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.658 kcal (2) G-P(sol) polarization free energy of solvation -79.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds