Wall clock time and date at job start Sun Mar 29 2020 23:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99927 * 2 1 4 4 N 1.46898 * 109.47053 * 125.00203 * 3 2 1 5 5 C 1.46893 * 111.00285 * 294.83080 * 4 3 2 6 6 C 1.50700 * 109.47170 * 296.10837 * 5 4 3 7 7 H 1.07993 * 119.99612 * 4.57956 * 6 5 4 8 8 C 1.37877 * 120.00220 * 184.57915 * 6 5 4 9 9 N 1.31509 * 120.00299 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99836 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47150 * 89.99977 * 10 8 6 12 12 H 1.48499 * 109.47175 * 209.99945 * 10 8 6 13 13 H 1.48503 * 109.47167 * 329.99968 * 10 8 6 14 14 C 1.46898 * 111.00168 * 170.87442 * 4 3 2 15 15 H 1.08990 * 109.47240 * 56.22645 * 14 4 3 16 16 C 1.53001 * 109.47128 * 296.22637 * 14 4 3 17 17 C 1.50702 * 109.47194 * 176.22676 * 14 4 3 18 18 N 1.30252 * 125.61713 * 47.16583 * 17 14 4 19 19 C 1.34483 * 108.69966 * 179.97438 * 18 17 14 20 20 C 1.34331 * 107.66927 * 0.02562 * 19 18 17 21 21 C 1.50693 * 126.44648 * 179.97438 * 20 19 18 22 22 O 1.33965 * 125.62041 * 227.13783 * 17 14 4 23 23 H 1.08002 * 119.99881 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00377 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47062 * 5.00619 * 3 2 1 27 27 H 1.08998 * 109.47491 * 245.00815 * 3 2 1 28 28 H 1.09008 * 109.47596 * 56.10985 * 5 4 3 29 29 H 1.08999 * 109.47320 * 176.10705 * 5 4 3 30 30 H 0.97003 * 120.00532 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47048 * 180.02562 * 16 14 4 32 32 H 1.09004 * 109.47239 * 300.00122 * 16 14 4 33 33 H 1.09003 * 109.47273 * 59.99723 * 16 14 4 34 34 H 1.07997 * 126.16501 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47150 * 270.02058 * 21 20 19 36 36 H 1.09005 * 109.47006 * 30.02149 * 21 20 19 37 37 H 1.09002 * 109.47455 * 150.01752 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2717 1.3261 2.4122 6 6 1.4541 2.5864 2.5319 7 1 1.4126 3.2833 1.7080 8 6 0.7592 2.8497 3.6933 9 7 0.0454 3.9492 3.7975 10 14 0.8317 1.6445 5.1186 11 1 1.9650 1.9997 6.0101 12 1 -0.4390 1.7068 5.8847 13 1 1.0266 0.2688 4.5943 14 6 3.8990 2.4875 1.0466 15 1 3.3117 3.4036 0.9860 16 6 4.7728 2.3583 -0.2027 17 6 4.7767 2.5337 2.2708 18 7 5.4252 1.5242 2.7777 19 6 6.0985 1.9453 3.8630 20 6 5.8463 3.2558 4.0161 21 6 6.3872 4.1508 5.1012 22 8 5.0188 3.6197 3.0168 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5399 0.9353 0.0004 25 1 1.8501 -0.9352 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6212 1.4028 -0.9314 28 1 1.6114 0.4596 2.4515 29 1 2.9854 1.2765 3.2345 30 1 -0.4432 4.1347 4.6147 31 1 5.4429 3.2155 -0.2676 32 1 5.3602 1.4421 -0.1421 33 1 4.1380 2.3249 -1.0882 34 1 6.7279 1.3390 4.4975 35 1 5.7069 4.1412 5.9528 36 1 7.3670 3.7902 5.4147 37 1 6.4791 5.1682 4.7209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428871736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:34 Heat of formation + Delta-G solvation = 28.556117 kcal Electronic energy + Delta-G solvation = -19079.164748 eV Core-core repulsion = 16244.267114 eV Total energy + Delta-G solvation = -2834.897634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.23729 -39.44576 -35.65032 -34.87246 -34.82723 -33.09852 -31.94402 -29.27644 -27.68991 -26.23310 -24.54533 -23.45001 -22.44941 -21.06479 -20.56682 -18.98737 -17.96198 -17.69914 -16.97666 -16.38943 -16.12782 -15.71530 -15.21108 -15.01508 -14.59111 -14.28012 -14.18591 -13.86000 -13.54487 -13.32283 -13.18042 -12.98722 -12.90816 -12.73588 -12.39807 -12.21658 -12.08342 -11.94812 -11.82283 -11.63804 -11.37317 -10.84398 -10.13509 -9.50212 -9.08445 -8.37287 -6.39191 0.53825 1.21825 1.24306 1.36281 1.44973 1.79046 1.85079 2.24945 2.98659 3.15608 3.28667 3.91777 4.10005 4.15385 4.19128 4.28267 4.38539 4.51387 4.55359 4.64371 4.65304 4.81410 4.89309 4.96591 5.02219 5.04299 5.11724 5.15428 5.24549 5.25707 5.38753 5.49700 5.80594 5.89711 6.07687 6.23101 6.32549 6.64374 6.90538 7.26648 8.78563 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.010897 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.146210 B = 2568.966373 C = 3724.501098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.080 3.920 4 N -0.508 5.508 5 C 0.170 3.830 6 C -0.538 4.538 7 H 0.043 0.957 8 C 0.024 3.976 9 N -0.938 5.938 10 Si 0.927 3.073 11 H -0.276 1.276 12 H -0.276 1.276 13 H -0.254 1.254 14 C 0.179 3.821 15 H 0.046 0.954 16 C -0.128 4.128 17 C 0.203 3.797 18 N -0.485 5.485 19 C -0.064 4.064 20 C -0.069 4.069 21 C -0.062 4.062 22 O -0.223 6.223 23 H 0.116 0.884 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.025 0.975 27 H 0.103 0.897 28 H 0.029 0.971 29 H 0.011 0.989 30 H 0.265 0.735 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.211 0.789 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 -3.636 -2.837 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.159 4.159 3 C -0.047 4.047 4 N -0.232 5.232 5 C 0.042 3.958 6 C -0.577 4.577 7 H 0.062 0.938 8 C -0.175 4.175 9 N -0.578 5.578 10 Si 0.751 3.249 11 H -0.202 1.202 12 H -0.201 1.201 13 H -0.177 1.177 14 C 0.070 3.930 15 H 0.064 0.936 16 C -0.185 4.185 17 C -0.004 4.004 18 N -0.214 5.214 19 C -0.202 4.202 20 C -0.122 4.122 21 C -0.119 4.119 22 O -0.110 6.110 23 H 0.134 0.866 24 H 0.098 0.902 25 H 0.139 0.861 26 H 0.043 0.957 27 H 0.121 0.879 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.379 -4.524 -3.012 12.610 hybrid contribution -1.055 1.330 1.417 2.211 sum 10.324 -3.194 -1.595 10.924 Atomic orbital electron populations 1.23900 0.96082 1.01811 1.01027 1.22800 0.95624 0.98105 0.99377 1.21295 0.94095 0.95498 0.93770 1.62481 1.19301 1.38244 1.03210 1.19911 0.92153 0.95095 0.88624 1.21764 1.28923 1.06215 1.00799 0.93842 1.25630 0.94520 0.96430 1.00904 1.70031 1.32495 1.26819 1.28504 0.86008 0.77767 0.81065 0.80036 1.20221 1.20143 1.17747 1.19843 0.91105 0.94311 0.87769 0.93567 1.21839 0.99253 1.03186 0.94268 1.26108 0.98905 0.79172 0.96206 1.70394 1.10715 1.29865 1.10457 1.23643 1.04712 0.93577 0.98295 1.24343 0.96756 0.97955 0.93169 1.20448 1.02142 0.97681 0.91586 1.84410 1.52507 1.40013 1.34036 0.86627 0.90223 0.86079 0.95669 0.87933 0.95303 0.97102 0.92557 0.91110 0.90947 0.89211 0.77250 0.89884 0.85690 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.25 14.32 67.78 0.97 -5.28 16 2 C -0.14 -4.75 8.52 25.65 0.22 -4.53 16 3 C 0.08 2.96 5.07 85.56 0.43 3.39 16 4 N -0.51 -21.32 4.57 -884.49 -4.04 -25.36 16 5 C 0.17 8.49 3.63 85.56 0.31 8.80 16 6 C -0.54 -30.70 8.16 25.60 0.21 -30.49 16 7 H 0.04 2.70 6.11 -2.91 -0.02 2.68 16 8 C 0.02 1.42 5.47 84.66 0.46 1.88 16 9 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 10 Si 0.93 46.06 27.38 68.60 1.88 47.94 16 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.25 -12.13 6.68 99.48 0.66 -11.47 16 14 C 0.18 7.19 2.16 44.17 0.10 7.29 16 15 H 0.05 2.10 6.83 -2.39 -0.02 2.08 16 16 C -0.13 -3.76 9.07 71.98 0.65 -3.11 16 17 C 0.20 8.63 5.48 88.34 0.48 9.12 16 18 N -0.49 -19.86 10.82 -303.83 -3.29 -23.15 16 19 C -0.06 -2.18 11.80 83.39 0.98 -1.20 16 20 C -0.07 -2.37 7.39 24.79 0.18 -2.19 16 21 C -0.06 -1.38 10.43 71.23 0.74 -0.64 16 22 O -0.22 -9.54 10.77 -3.71 -0.04 -9.58 16 23 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 24 H 0.08 2.89 7.84 -2.91 -0.02 2.86 16 25 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 26 H 0.03 1.08 6.14 -2.39 -0.01 1.07 16 27 H 0.10 3.07 6.01 -2.39 -0.01 3.05 16 28 H 0.03 1.47 6.51 -2.38 -0.02 1.46 16 29 H 0.01 0.58 5.70 -2.39 -0.01 0.57 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.09 2.22 6.31 -2.39 -0.02 2.21 16 34 H 0.21 5.27 8.06 -2.91 -0.02 5.25 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.68 304.52 1.57 -70.11 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.01 Total: 15.23 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 5.75 Total: -16.96 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -7.03 Total: -106.74 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.04 Total: -9.58 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -71.68 1.57 -70.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428871736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.668 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds