Wall clock time and date at job start Sun Mar 29 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99769 * 2 1 4 4 H 1.48498 * 109.47667 * 270.00157 * 3 2 1 5 5 H 1.48501 * 109.47278 * 30.00414 * 3 2 1 6 6 H 1.48501 * 109.47191 * 149.99946 * 3 2 1 7 7 C 1.37870 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00143 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99928 * 179.97438 * 7 2 1 10 10 C 1.53009 * 109.47245 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47275 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47232 * 180.02562 * 11 10 9 13 13 C 1.34772 * 119.99731 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00727 * 359.97438 * 13 12 11 15 15 C 1.50707 * 119.99738 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47449 * 179.97438 * 15 13 12 17 17 N 1.46494 * 109.47444 * 180.02562 * 16 15 13 18 18 C 1.36345 * 125.63345 * 90.00307 * 17 16 15 19 19 C 1.34850 * 108.21864 * 179.97438 * 18 17 16 20 20 C 1.40894 * 107.41649 * 0.02562 * 19 18 17 21 21 C 1.34846 * 107.41755 * 359.97438 * 20 19 18 22 22 H 0.97002 * 120.00253 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47297 * 60.00232 * 9 7 2 24 24 H 1.08993 * 109.47290 * 300.00226 * 9 7 2 25 25 H 1.09000 * 109.46831 * 59.99889 * 10 9 7 26 26 H 1.09003 * 109.46611 * 300.00529 * 10 9 7 27 27 H 1.08998 * 109.47292 * 59.99559 * 11 10 9 28 28 H 1.09005 * 109.47293 * 300.00460 * 11 10 9 29 29 H 0.96996 * 119.99648 * 0.02562 * 12 11 10 30 30 H 1.09009 * 109.46880 * 59.99997 * 15 13 12 31 31 H 1.08993 * 109.47272 * 300.00141 * 15 13 12 32 32 H 1.09006 * 109.46659 * 59.99780 * 16 15 13 33 33 H 1.09005 * 109.47449 * 300.00857 * 16 15 13 34 34 H 1.08006 * 125.89009 * 359.71336 * 18 17 16 35 35 H 1.08004 * 126.29266 * 180.02562 * 19 18 17 36 36 H 1.07995 * 126.28821 * 179.97438 * 20 19 18 37 37 H 1.08002 * 125.89342 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0037 14 8 8.1531 -3.3421 -0.0025 15 6 7.8674 -5.6848 -0.0049 16 6 9.3973 -5.6848 -0.0050 17 7 9.8857 -7.0659 -0.0068 18 6 10.1505 -7.8134 -1.1159 19 6 10.5799 -9.0268 -0.7139 20 6 10.5797 -9.0288 0.6951 21 6 10.1507 -7.8163 1.1003 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6799 -0.8910 25 1 3.6579 -3.1497 -0.8925 26 1 3.6585 -3.1509 0.8875 27 1 5.9149 -2.1234 0.8881 28 1 5.9150 -2.1219 -0.8918 29 1 5.4096 -4.7549 -0.0053 30 1 7.5043 -6.1977 -0.8956 31 1 7.5037 -6.1995 0.8844 32 1 9.7607 -5.1716 0.8855 33 1 9.7607 -5.1701 -0.8945 34 1 10.0323 -7.4909 -2.1398 35 1 10.8707 -9.8465 -1.3542 36 1 10.8699 -9.8503 1.3332 37 1 10.0368 -7.4949 2.1251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610426150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:02 Heat of formation + Delta-G solvation = -26.225283 kcal Electronic energy + Delta-G solvation = -16973.626521 eV Core-core repulsion = 14136.353387 eV Total energy + Delta-G solvation = -2837.273134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01264 -40.72908 -37.08778 -35.16870 -34.98428 -33.32490 -30.82474 -29.62002 -28.82957 -25.59869 -24.04151 -22.26209 -21.32588 -21.24666 -20.73711 -18.99858 -18.62321 -17.44507 -17.02485 -17.01799 -16.24311 -16.02030 -15.38986 -14.94966 -14.79456 -14.65670 -14.19411 -13.87351 -13.81590 -13.57315 -13.12061 -13.06118 -12.87970 -12.74935 -12.70609 -12.23873 -11.94070 -11.79520 -11.60900 -11.34517 -10.99294 -10.77283 -10.12049 -9.51745 -9.03433 -8.30411 -6.34533 1.36241 1.37812 1.38118 1.49502 1.56170 1.86741 2.18553 2.35386 2.41830 3.05384 3.64941 3.76021 3.89125 4.10268 4.18776 4.27315 4.40348 4.42784 4.47517 4.49362 4.77064 4.82263 4.84456 4.87898 4.91299 5.02438 5.36941 5.43649 5.46742 5.48627 5.54603 5.64155 6.12901 6.26154 6.37015 6.50187 6.52780 6.73937 7.18559 7.30501 8.85993 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.063650 B = 0.002845 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.801910 B = 9839.111858 C =10062.609870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.126 3.874 12 N -0.717 5.717 13 C 0.515 3.485 14 O -0.586 6.586 15 C -0.142 4.142 16 C 0.124 3.876 17 N -0.450 5.450 18 C -0.025 4.025 19 C -0.222 4.222 20 C -0.222 4.222 21 C -0.025 4.025 22 H 0.266 0.734 23 H 0.021 0.979 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.416 0.584 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.177 0.823 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.626 -15.826 -0.009 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.051 4.051 10 C -0.139 4.139 11 C 0.002 3.998 12 N -0.368 5.368 13 C 0.302 3.698 14 O -0.467 6.467 15 C -0.183 4.183 16 C 0.002 3.998 17 N -0.126 5.126 18 C -0.155 4.155 19 C -0.247 4.247 20 C -0.247 4.247 21 C -0.155 4.155 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.253 0.747 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.194 0.806 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 20.903 -14.708 -0.005 25.558 hybrid contribution -0.657 0.514 -0.020 0.835 sum 20.245 -14.193 -0.025 24.725 Atomic orbital electron populations 1.70062 1.08247 1.28149 1.52681 1.26004 0.95603 1.03504 0.94237 0.85686 0.79518 0.78447 0.79177 1.19252 1.21104 1.17044 1.21473 0.91971 0.93225 1.50248 0.94464 1.19473 0.94015 0.94782 0.96808 1.21484 0.92207 0.98049 1.02167 1.21302 0.94261 0.82815 1.01445 1.46020 1.07259 1.09384 1.74158 1.20900 0.82112 0.91772 0.75044 1.90715 1.56168 1.48025 1.51786 1.21928 0.96216 0.92791 1.07317 1.21504 0.93023 0.79517 1.05755 1.44290 1.50297 1.11701 1.06290 1.22252 1.07977 0.92799 0.92470 1.21199 1.09632 0.98208 0.95624 1.21196 1.09626 0.98234 0.95606 1.22249 1.07993 0.92737 0.92516 0.92510 0.96088 0.96206 0.91721 0.91748 0.92368 0.92307 0.74749 0.86404 0.86404 0.88666 0.88667 0.80553 0.83928 0.83930 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.98 13.96 21.45 0.30 -58.69 16 2 C 0.00 0.19 5.47 84.65 0.46 0.66 16 3 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.53 -29.73 9.66 25.60 0.25 -29.49 16 8 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.47 5.27 30.60 0.16 -3.31 16 11 C 0.13 3.68 5.67 86.38 0.49 4.17 16 12 N -0.72 -15.89 5.56 -463.06 -2.57 -18.46 16 13 C 0.51 11.40 7.83 87.66 0.69 12.08 16 14 O -0.59 -17.90 15.98 -3.03 -0.05 -17.94 16 15 C -0.14 -1.95 6.02 29.85 0.18 -1.77 16 16 C 0.12 1.89 5.38 86.38 0.46 2.35 16 17 N -0.45 -7.38 2.75 -524.48 -1.44 -8.82 16 18 C -0.03 -0.42 11.43 83.21 0.95 0.53 16 19 C -0.22 -3.92 10.86 22.14 0.24 -3.68 16 20 C -0.22 -3.92 10.86 22.14 0.24 -3.68 16 21 C -0.03 -0.42 11.43 83.21 0.95 0.53 16 22 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 24 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.42 6.89 8.47 -92.71 -0.79 6.10 16 30 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.52 8.10 -2.38 -0.02 1.50 16 33 H 0.09 1.52 8.10 -2.38 -0.02 1.50 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.82 317.22 3.52 -67.30 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.20 Total: 12.96 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 5.20 Total: -22.04 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -3.71 Total: -85.97 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.94 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -70.82 3.52 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610426150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.077 kcal (2) G-P(sol) polarization free energy of solvation -70.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds