Wall clock time and date at job start Sun Mar 29 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.32716 * 124.62977 * 2 1 4 4 C 1.46952 * 124.62247 * 0.02562 * 3 2 1 5 5 O 1.21537 * 120.00236 * 5.26666 * 4 3 2 6 6 O 1.34804 * 119.99857 * 185.26965 * 4 3 2 7 7 C 1.45194 * 117.00056 * 185.01640 * 6 4 3 8 8 C 1.53000 * 109.46890 * 184.97346 * 7 6 4 9 9 C 1.50700 * 115.55136 * 54.70757 * 8 7 6 10 10 H 1.08005 * 119.99975 * 220.02692 * 9 8 7 11 11 C 1.37875 * 119.99981 * 39.74177 * 9 8 7 12 12 N 1.31506 * 120.00328 * 355.49304 * 11 9 8 13 13 Si 1.86806 * 119.99793 * 175.49188 * 11 9 8 14 14 H 1.48501 * 109.46954 * 90.00104 * 13 11 9 15 15 H 1.48495 * 109.47067 * 209.99929 * 13 11 9 16 16 H 1.48494 * 109.47075 * 330.00508 * 13 11 9 17 17 C 1.53008 * 117.51616 * 200.40380 * 8 7 6 18 18 C 1.53004 * 59.99913 * 107.48344 * 17 8 7 19 19 C 1.51104 * 110.74539 * 179.73475 * 3 2 1 20 20 C 1.54579 * 104.84467 * 16.87445 * 19 3 2 21 21 C 1.51112 * 124.63198 * 180.17748 * 2 1 3 22 22 H 1.09003 * 109.47589 * 5.26726 * 1 2 3 23 23 H 1.08995 * 109.47516 * 125.27327 * 1 2 3 24 24 H 1.09006 * 109.46970 * 245.27383 * 1 2 3 25 25 H 1.09000 * 109.47431 * 64.97631 * 7 6 4 26 26 H 1.08996 * 109.47117 * 304.97027 * 7 6 4 27 27 H 0.96999 * 120.00289 * 184.99728 * 12 11 9 28 28 H 1.09001 * 117.49406 * 214.97278 * 17 8 7 29 29 H 1.08994 * 117.50163 * 359.97438 * 17 8 7 30 30 H 1.09002 * 117.49222 * 252.51429 * 18 17 8 31 31 H 1.08998 * 117.51603 * 107.48239 * 18 17 8 32 32 H 1.08998 * 110.36546 * 135.71232 * 19 3 2 33 33 H 1.08997 * 110.36911 * 258.03243 * 19 3 2 34 34 H 1.08994 * 110.98155 * 93.05899 * 20 19 3 35 35 H 1.09000 * 110.97616 * 216.81251 * 20 19 3 36 36 H 1.09000 * 110.51609 * 44.69104 * 21 2 1 37 37 H 1.08996 * 110.15559 * 282.41013 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2611 1.0920 0.0000 4 6 1.7405 2.4663 0.0005 5 8 0.5451 2.6633 0.0976 6 8 2.5888 3.5084 -0.1067 7 6 2.0181 4.8380 0.0132 8 6 3.1013 5.8842 -0.2570 9 6 3.8287 5.7427 -1.5692 10 1 4.8942 5.9128 -1.6171 11 6 3.1350 5.3903 -2.7075 12 7 1.8566 5.0914 -2.6324 13 14 4.0112 5.3376 -4.3565 14 1 4.5704 3.9796 -4.5766 15 1 3.0472 5.6575 -5.4397 16 1 5.1126 6.3335 -4.3638 17 6 2.8626 7.3010 0.2692 18 6 3.9002 6.3999 0.9416 19 6 3.7280 0.7295 0.0065 20 6 3.7710 -0.7548 -0.4231 21 6 2.3657 -1.2434 -0.0039 22 1 -0.3634 1.0233 -0.0943 23 1 -0.3634 -0.5934 -0.8389 24 1 -0.3633 -0.4299 0.9335 25 1 1.6240 4.9749 1.0202 26 1 1.2120 4.9541 -0.7113 27 1 1.3857 4.7738 -3.4187 28 1 3.2318 8.1306 -0.3338 29 1 1.9336 7.4881 0.8076 30 1 3.6538 5.9940 1.9228 31 1 4.9521 6.6363 0.7812 32 1 4.2745 1.3467 -0.7065 33 1 4.1433 0.8467 1.0074 34 1 3.9104 -0.8454 -1.5003 35 1 4.5494 -1.2947 0.1160 36 1 1.9856 -1.9679 -0.7241 37 1 2.3982 -1.6805 0.9941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747244385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:37 Heat of formation + Delta-G solvation = -51.780903 kcal Electronic energy + Delta-G solvation = -18717.079074 eV Core-core repulsion = 15846.405015 eV Total energy + Delta-G solvation = -2870.674060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.70984 -37.98185 -36.55275 -34.89470 -32.13584 -31.05488 -29.19275 -26.39325 -25.57567 -25.26437 -21.99857 -21.22025 -20.58343 -19.13431 -17.87641 -16.56883 -16.09300 -15.64095 -15.16010 -15.04516 -14.49958 -13.90432 -13.35341 -13.05915 -12.91184 -12.80741 -12.42261 -11.92100 -11.79983 -11.55359 -11.40426 -11.18054 -11.00196 -10.94934 -10.89003 -10.74297 -10.48394 -10.31298 -9.78734 -9.37682 -9.17847 -8.94450 -8.72088 -8.50716 -8.19800 -5.96706 -4.08821 1.59454 3.28500 3.35531 3.38422 3.65920 3.76100 4.38089 4.65451 4.76854 5.03099 5.08445 5.24411 5.42969 5.54761 5.65540 5.72226 5.74008 5.91002 5.93710 6.00833 6.06634 6.19649 6.26212 6.31933 6.38749 6.50529 6.62630 6.65710 6.72758 6.81763 6.90242 7.05571 7.26580 7.51311 7.71925 7.94937 8.36076 8.78338 8.90243 9.53374 11.00000 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.007461 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.267005 B = 3751.872913 C = 4253.847957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.163 4.163 4 C 0.509 3.491 5 O -0.523 6.523 6 O -0.317 6.317 7 C 0.114 3.886 8 C 0.046 3.954 9 C -0.480 4.480 10 H 0.062 0.938 11 C 0.072 3.928 12 N -0.883 5.883 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.193 4.193 18 C -0.208 4.208 19 C -0.083 4.083 20 C -0.124 4.124 21 C -0.096 4.096 22 H 0.108 0.892 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.020 0.980 26 H 0.119 0.881 27 H 0.262 0.738 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -10.564 4.788 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.058 4.058 3 C -0.164 4.164 4 C 0.355 3.645 5 O -0.416 6.416 6 O -0.231 6.231 7 C 0.041 3.959 8 C 0.045 3.955 9 C -0.517 4.517 10 H 0.080 0.920 11 C -0.131 4.131 12 N -0.521 5.521 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.231 4.231 18 C -0.245 4.245 19 C -0.121 4.121 20 C -0.161 4.161 21 C -0.133 4.133 22 H 0.126 0.874 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.038 0.962 26 H 0.137 0.863 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.431 -10.438 4.653 11.436 hybrid contribution 0.315 0.066 -0.803 0.865 sum 0.746 -10.372 3.850 11.088 Atomic orbital electron populations 1.21123 0.90338 1.06672 1.01345 1.22769 0.96063 0.93969 0.92983 1.20987 0.97051 0.90262 1.08140 1.20683 0.84614 0.86199 0.73026 1.90625 1.16964 1.86242 1.47808 1.86545 1.40027 1.15998 1.80508 1.22880 0.98395 0.76451 0.98150 1.18916 0.94842 0.89210 0.92491 1.20430 0.93914 1.47154 0.90248 0.92001 1.24960 0.94690 0.94325 0.99088 1.69743 1.08494 1.44099 1.29724 0.86506 0.79337 0.78448 0.83273 1.20553 1.21146 1.19787 1.22958 0.98601 0.96790 1.04785 1.22925 0.96629 1.07612 0.97351 1.21128 0.92707 0.95709 1.02507 1.22439 0.96208 0.95854 1.01622 1.21359 0.94343 0.95561 1.02024 0.87370 0.91622 0.91347 0.96177 0.86323 0.92743 0.89803 0.91452 0.91305 0.90322 0.89628 0.90479 0.90873 0.90698 0.90529 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.18 36.00 0.37 -1.65 16 2 C -0.06 -0.87 6.24 -101.04 -0.63 -1.50 16 3 C -0.16 -2.97 6.09 -102.78 -0.63 -3.59 16 4 C 0.51 11.49 7.91 34.26 0.27 11.76 16 5 O -0.52 -12.52 13.61 -19.29 -0.26 -12.78 16 6 O -0.32 -7.86 9.79 -40.78 -0.40 -8.26 16 7 C 0.11 2.91 4.58 37.16 0.17 3.08 16 8 C 0.05 1.16 2.15 -155.65 -0.33 0.83 16 9 C -0.48 -13.17 8.76 -34.44 -0.30 -13.47 16 10 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 11 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 12 N -0.88 -24.99 10.48 55.43 0.58 -24.41 16 13 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 C -0.19 -4.37 9.96 -26.72 -0.27 -4.64 16 18 C -0.21 -4.57 9.92 -26.73 -0.27 -4.84 16 19 C -0.08 -1.28 6.57 -26.86 -0.18 -1.45 16 20 C -0.12 -1.45 7.16 -25.08 -0.18 -1.63 16 21 C -0.10 -1.10 6.75 -26.85 -0.18 -1.28 16 22 H 0.11 1.94 4.98 -51.93 -0.26 1.68 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.12 3.34 5.73 -51.93 -0.30 3.04 16 27 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 28 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 309.04 15.07 4.66 4.66 Total: -1.00 -29.77 309.04 -8.29 -38.06 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.59 Total: 3.04 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.25 Total: -16.51 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.58 Total: -24.41 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.66 Total: -21.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.77 -8.29 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747244385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.722 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds