Wall clock time and date at job start Sun Mar 29 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.32716 * 124.62977 * 2 1 4 4 C 1.46952 * 124.62247 * 0.02562 * 3 2 1 5 5 O 1.21537 * 120.00236 * 5.26666 * 4 3 2 6 6 O 1.34804 * 119.99857 * 185.26965 * 4 3 2 7 7 C 1.45194 * 117.00056 * 185.01640 * 6 4 3 8 8 C 1.53000 * 109.46890 * 184.97346 * 7 6 4 9 9 C 1.50700 * 115.55136 * 54.70757 * 8 7 6 10 10 H 1.08005 * 119.99975 * 220.02692 * 9 8 7 11 11 C 1.37875 * 119.99981 * 39.74177 * 9 8 7 12 12 N 1.31506 * 120.00328 * 355.49304 * 11 9 8 13 13 Si 1.86806 * 119.99793 * 175.49188 * 11 9 8 14 14 H 1.48501 * 109.46954 * 90.00104 * 13 11 9 15 15 H 1.48495 * 109.47067 * 209.99929 * 13 11 9 16 16 H 1.48494 * 109.47075 * 330.00508 * 13 11 9 17 17 C 1.53008 * 117.51616 * 200.40380 * 8 7 6 18 18 C 1.53004 * 59.99913 * 107.48344 * 17 8 7 19 19 C 1.51104 * 110.74539 * 179.73475 * 3 2 1 20 20 C 1.54579 * 104.84467 * 16.87445 * 19 3 2 21 21 C 1.51112 * 124.63198 * 180.17748 * 2 1 3 22 22 H 1.09003 * 109.47589 * 5.26726 * 1 2 3 23 23 H 1.08995 * 109.47516 * 125.27327 * 1 2 3 24 24 H 1.09006 * 109.46970 * 245.27383 * 1 2 3 25 25 H 1.09000 * 109.47431 * 64.97631 * 7 6 4 26 26 H 1.08996 * 109.47117 * 304.97027 * 7 6 4 27 27 H 0.96999 * 120.00289 * 184.99728 * 12 11 9 28 28 H 1.09001 * 117.49406 * 214.97278 * 17 8 7 29 29 H 1.08994 * 117.50163 * 359.97438 * 17 8 7 30 30 H 1.09002 * 117.49222 * 252.51429 * 18 17 8 31 31 H 1.08998 * 117.51603 * 107.48239 * 18 17 8 32 32 H 1.08998 * 110.36546 * 135.71232 * 19 3 2 33 33 H 1.08997 * 110.36911 * 258.03243 * 19 3 2 34 34 H 1.08994 * 110.98155 * 93.05899 * 20 19 3 35 35 H 1.09000 * 110.97616 * 216.81251 * 20 19 3 36 36 H 1.09000 * 110.51609 * 44.69104 * 21 2 1 37 37 H 1.08996 * 110.15559 * 282.41013 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2611 1.0920 0.0000 4 6 1.7405 2.4663 0.0005 5 8 0.5451 2.6633 0.0976 6 8 2.5888 3.5084 -0.1067 7 6 2.0181 4.8380 0.0132 8 6 3.1013 5.8842 -0.2570 9 6 3.8287 5.7427 -1.5692 10 1 4.8942 5.9128 -1.6171 11 6 3.1350 5.3903 -2.7075 12 7 1.8566 5.0914 -2.6324 13 14 4.0112 5.3376 -4.3565 14 1 4.5704 3.9796 -4.5766 15 1 3.0472 5.6575 -5.4397 16 1 5.1126 6.3335 -4.3638 17 6 2.8626 7.3010 0.2692 18 6 3.9002 6.3999 0.9416 19 6 3.7280 0.7295 0.0065 20 6 3.7710 -0.7548 -0.4231 21 6 2.3657 -1.2434 -0.0039 22 1 -0.3634 1.0233 -0.0943 23 1 -0.3634 -0.5934 -0.8389 24 1 -0.3633 -0.4299 0.9335 25 1 1.6240 4.9749 1.0202 26 1 1.2120 4.9541 -0.7113 27 1 1.3857 4.7738 -3.4187 28 1 3.2318 8.1306 -0.3338 29 1 1.9336 7.4881 0.8076 30 1 3.6538 5.9940 1.9228 31 1 4.9521 6.6363 0.7812 32 1 4.2745 1.3467 -0.7065 33 1 4.1433 0.8467 1.0074 34 1 3.9104 -0.8454 -1.5003 35 1 4.5494 -1.2947 0.1160 36 1 1.9856 -1.9679 -0.7241 37 1 2.3982 -1.6805 0.9941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747244385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:37 Heat of formation + Delta-G solvation = -66.797197 kcal Electronic energy + Delta-G solvation = -18717.730230 eV Core-core repulsion = 15846.405015 eV Total energy + Delta-G solvation = -2871.325215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31200 -39.39384 -38.33394 -36.71682 -34.20293 -32.20895 -30.45858 -28.21035 -27.37106 -26.66755 -23.52615 -22.98493 -21.73462 -21.10677 -19.41964 -18.46400 -17.80596 -17.21551 -16.67564 -16.56599 -16.21436 -15.66478 -14.99898 -14.38044 -14.29739 -14.05375 -13.84186 -13.59622 -13.37304 -13.33268 -12.91452 -12.76459 -12.57983 -12.34282 -12.31899 -12.14244 -11.99827 -11.85132 -11.66625 -11.28692 -10.94571 -10.88573 -10.68342 -10.16496 -9.74097 -8.02723 -6.21929 0.21236 1.39674 1.40530 1.50971 2.03356 2.13465 2.40399 3.03272 3.48843 3.58760 3.68336 4.03853 4.14739 4.20859 4.22722 4.37761 4.50301 4.56702 4.68866 4.71364 4.80954 4.87095 4.88851 4.95696 4.97118 5.03459 5.09549 5.16057 5.20675 5.36346 5.43926 5.47492 5.50927 5.60725 5.83013 5.99151 6.31187 6.76723 7.05560 7.42390 8.91234 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.007461 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.267005 B = 3751.872913 C = 4253.847957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 C -0.218 4.218 4 C 0.497 3.503 5 O -0.551 6.551 6 O -0.334 6.334 7 C 0.124 3.876 8 C 0.003 3.997 9 C -0.496 4.496 10 H 0.057 0.943 11 C 0.025 3.975 12 N -0.908 5.908 13 Si 0.956 3.044 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.184 4.184 18 C -0.185 4.185 19 C -0.081 4.081 20 C -0.115 4.115 21 C -0.090 4.090 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.026 0.974 26 H 0.086 0.914 27 H 0.257 0.743 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -12.804 5.209 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.219 4.219 4 C 0.345 3.655 5 O -0.446 6.446 6 O -0.249 6.249 7 C 0.050 3.950 8 C 0.003 3.997 9 C -0.533 4.533 10 H 0.076 0.924 11 C -0.175 4.175 12 N -0.546 5.546 13 Si 0.781 3.219 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.222 4.222 18 C -0.222 4.222 19 C -0.119 4.119 20 C -0.152 4.152 21 C -0.126 4.126 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.044 0.956 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.362 -12.674 5.084 13.723 hybrid contribution -0.058 0.708 -0.873 1.126 sum 1.304 -11.966 4.210 12.752 Atomic orbital electron populations 1.21169 0.90104 1.04914 1.03820 1.23398 0.96654 0.94942 0.87680 1.21106 0.99272 0.88330 1.13162 1.21621 0.84381 0.87402 0.72064 1.90608 1.17856 1.86831 1.49303 1.86544 1.40923 1.16238 1.81169 1.22586 0.97707 0.77424 0.97259 1.19070 0.96456 0.90777 0.93435 1.20684 0.93849 1.47190 0.91567 0.92448 1.25691 0.95331 0.94196 1.02246 1.69937 1.09696 1.44989 1.30022 0.85584 0.78437 0.78590 0.79292 1.20228 1.21024 1.18828 1.22967 0.99549 0.95335 1.04365 1.22947 0.96784 1.05669 0.96787 1.21132 0.90518 0.97970 1.02247 1.22464 0.97572 0.93056 1.02089 1.21503 0.92867 0.93764 1.04496 0.91277 0.89094 0.88541 0.95609 0.89607 0.93310 0.89717 0.90050 0.89502 0.89492 0.92616 0.89859 0.90877 0.87581 0.87764 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 10.18 71.23 0.73 -3.21 16 2 C -0.03 -0.74 6.24 -17.49 -0.11 -0.85 16 3 C -0.22 -7.94 6.09 -18.62 -0.11 -8.06 16 4 C 0.50 23.49 7.91 70.10 0.55 24.05 16 5 O -0.55 -27.83 13.61 19.71 0.27 -27.56 16 6 O -0.33 -17.39 9.79 -57.16 -0.56 -17.95 16 7 C 0.12 6.56 4.58 71.98 0.33 6.89 16 8 C 0.00 0.16 2.15 -52.92 -0.11 0.04 16 9 C -0.50 -27.72 8.76 25.60 0.22 -27.50 16 10 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 11 C 0.02 1.39 5.39 84.66 0.46 1.84 16 12 N -0.91 -53.35 10.48 21.45 0.22 -53.13 16 13 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 17 C -0.18 -8.27 9.96 30.60 0.30 -7.96 16 18 C -0.18 -7.97 9.92 30.60 0.30 -7.67 16 19 C -0.08 -2.45 6.57 30.51 0.20 -2.25 16 20 C -0.11 -2.31 7.16 31.67 0.23 -2.08 16 21 C -0.09 -1.65 6.75 30.51 0.21 -1.44 16 22 H 0.07 2.52 4.98 -2.39 -0.01 2.50 16 23 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 25 H 0.03 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.09 5.11 5.73 -2.39 -0.01 5.10 16 27 H 0.26 14.68 8.32 -92.71 -0.77 13.91 16 28 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -67.75 309.04 6.20 -61.54 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.05 Total: 19.00 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.20 Total: -28.19 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.22 Total: -53.13 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.29 Total: -45.51 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.75 6.20 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747244385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.252 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds