Wall clock time and date at job start Sun Mar 29 2020 23:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00420 * 2 1 4 4 H 1.48502 * 109.46986 * 270.00260 * 3 2 1 5 5 H 1.48500 * 109.46904 * 30.00060 * 3 2 1 6 6 H 1.48496 * 109.47323 * 150.00324 * 3 2 1 7 7 C 1.37879 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99930 * 186.48271 * 7 2 1 9 9 C 1.50702 * 120.00048 * 6.75420 * 7 2 1 10 10 C 1.53000 * 115.55023 * 274.53942 * 9 7 2 11 11 N 1.46493 * 109.47502 * 294.83093 * 10 9 7 12 12 C 1.34780 * 120.00228 * 177.70168 * 11 10 9 13 13 O 1.21586 * 119.99616 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99975 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00115 * 179.97438 * 14 12 11 16 16 H 1.08998 * 110.34358 * 34.30079 * 15 14 12 17 17 C 1.51107 * 110.38462 * 272.01650 * 15 14 12 18 18 C 1.30532 * 111.10067 * 224.74711 * 17 15 14 19 19 C 1.51100 * 111.10481 * 359.97438 * 18 17 15 20 20 C 1.54630 * 110.38812 * 156.59118 * 15 14 12 21 21 C 1.52998 * 117.49647 * 128.87096 * 9 7 2 22 22 C 1.52999 * 117.49747 * 60.21164 * 9 7 2 23 23 H 0.96997 * 119.99719 * 5.02922 * 1 2 3 24 24 H 1.08998 * 109.46814 * 54.82889 * 10 9 7 25 25 H 1.09001 * 109.46859 * 174.82404 * 10 9 7 26 26 H 0.97004 * 119.99748 * 357.69392 * 11 10 9 27 27 H 0.96998 * 120.00141 * 0.02562 * 14 12 11 28 28 H 1.07996 * 124.44857 * 44.77113 * 17 15 14 29 29 H 1.08001 * 124.44573 * 180.02562 * 18 17 15 30 30 H 1.09001 * 110.38473 * 135.24138 * 19 18 17 31 31 H 1.08994 * 110.38819 * 257.51323 * 19 18 17 32 32 H 1.08997 * 111.03603 * 261.47455 * 20 15 14 33 33 H 1.08999 * 111.03717 * 25.41107 * 20 15 14 34 34 H 1.08993 * 117.50272 * 359.97438 * 21 9 7 35 35 H 1.09006 * 117.49438 * 145.02383 * 21 9 7 36 36 H 1.08995 * 117.49827 * 214.97762 * 22 9 7 37 37 H 1.09001 * 117.49746 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0793 -1.1971 0.1051 9 6 1.2588 -2.4946 -0.1546 10 6 0.6978 -3.0908 1.1380 11 7 1.8034 -3.4672 2.0223 12 6 1.5463 -3.9738 3.2445 13 8 0.3967 -4.1179 3.6133 14 7 2.5635 -4.3206 4.0578 15 6 2.2841 -4.8707 5.3866 16 1 1.3786 -5.4769 5.3630 17 6 2.1459 -3.7573 6.3988 18 6 2.7976 -4.0352 7.4951 19 6 3.4785 -5.3806 7.3970 20 6 3.4825 -5.7115 5.8844 21 6 1.7519 -3.4689 -1.2262 22 6 0.4473 -2.6961 -1.4359 23 1 -0.4849 0.8368 -0.0736 24 1 0.0696 -2.3522 1.6360 25 1 0.1036 -3.9738 0.9029 26 1 2.7205 -3.3520 1.7281 27 1 3.4806 -4.2052 3.7637 28 1 1.5817 -2.8508 6.2366 29 1 2.8433 -3.3889 8.3591 30 1 4.4990 -5.3180 7.7749 31 1 2.9151 -6.1325 7.9494 32 1 3.3121 -6.7746 5.7146 33 1 4.4108 -5.3859 5.4150 34 1 2.6153 -3.1692 -1.8200 35 1 1.6762 -4.5348 -1.0104 36 1 -0.4860 -3.2537 -1.3581 37 1 0.4525 -1.8879 -2.1673 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852300365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:09 Heat of formation + Delta-G solvation = -11.770049 kcal Electronic energy + Delta-G solvation = -18093.645266 eV Core-core repulsion = 15256.998959 eV Total energy + Delta-G solvation = -2836.646308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.14867 -39.36552 -38.36572 -35.01760 -34.44637 -33.93566 -29.92826 -28.73175 -27.61112 -26.46207 -22.98132 -21.92719 -21.89487 -21.23842 -19.71714 -19.24910 -18.14161 -17.44831 -16.74431 -16.64696 -16.17365 -15.96122 -15.51438 -14.99197 -14.43571 -14.34852 -13.81940 -13.47505 -13.21199 -12.99522 -12.85194 -12.75832 -12.58014 -12.38478 -12.30961 -12.09930 -12.02804 -11.51151 -11.27990 -10.82400 -10.45369 -10.28610 -10.03639 -9.92445 -9.58404 -8.10287 -6.22780 1.23172 1.42113 1.44004 1.52037 1.96647 2.26416 2.43162 3.19293 3.36411 3.59949 3.67669 3.78247 4.19633 4.26585 4.43231 4.50760 4.57465 4.67036 4.72385 4.74113 4.87089 4.98260 5.00633 5.03867 5.17148 5.26181 5.28551 5.56584 5.60023 5.61640 5.64254 5.73230 5.79449 5.90838 6.18305 6.37170 6.84891 7.26850 7.47038 7.71438 8.98312 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.005274 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.844988 B = 5308.274816 C = 5921.943464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.003 3.997 10 C 0.199 3.801 11 N -0.715 5.715 12 C 0.694 3.306 13 O -0.648 6.648 14 N -0.726 5.726 15 C 0.177 3.823 16 H 0.072 0.928 17 C -0.205 4.205 18 C -0.143 4.143 19 C -0.095 4.095 20 C -0.119 4.119 21 C -0.173 4.173 22 C -0.159 4.159 23 H 0.258 0.742 24 H 0.023 0.977 25 H 0.031 0.969 26 H 0.406 0.594 27 H 0.409 0.591 28 H 0.093 0.907 29 H 0.140 0.860 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -10.444 10.610 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.538 4.538 8 H 0.082 0.918 9 C 0.002 3.998 10 C 0.074 3.926 11 N -0.368 5.368 12 C 0.393 3.607 13 O -0.531 6.531 14 N -0.382 5.382 15 C 0.072 3.928 16 H 0.090 0.910 17 C -0.225 4.225 18 C -0.162 4.162 19 C -0.132 4.132 20 C -0.157 4.157 21 C -0.210 4.210 22 C -0.198 4.198 23 H 0.067 0.933 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.242 0.758 27 H 0.246 0.754 28 H 0.111 0.889 29 H 0.158 0.842 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.416 -10.462 10.976 17.849 hybrid contribution 0.279 1.611 -0.534 1.720 sum 9.694 -8.851 10.442 16.773 Atomic orbital electron populations 1.70145 1.07294 1.27356 1.49790 1.25701 0.95414 1.02093 0.94525 0.85707 0.78841 0.79867 0.78140 1.20049 1.22059 1.18900 1.20668 0.92973 0.89730 1.50442 0.91847 1.19070 0.99864 0.94597 0.86259 1.20402 0.87146 0.95063 0.89997 1.44905 1.10830 1.66532 1.14551 1.16295 0.84998 0.78341 0.81022 1.90832 1.21921 1.63654 1.76707 1.45087 1.07938 1.68973 1.16169 1.20822 0.99775 0.92763 0.79445 0.91041 1.23582 1.01790 0.99512 0.97570 1.23549 0.96831 0.98106 0.97704 1.21434 1.02021 0.94257 0.95498 1.22830 0.96594 1.00258 0.95981 1.23007 0.97292 0.96265 1.04448 1.22433 0.93891 1.01429 1.02013 0.93304 0.95818 0.95032 0.75847 0.75403 0.88926 0.84238 0.88515 0.89006 0.88711 0.88912 0.89371 0.89218 0.91149 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.39 12.92 21.45 0.28 -52.11 16 2 C 0.02 1.25 5.38 84.66 0.46 1.70 16 3 Si 0.95 42.73 29.55 68.60 2.03 44.75 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.50 -25.79 8.68 25.60 0.22 -25.57 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.00 0.14 1.37 -52.93 -0.07 0.07 16 10 C 0.20 9.49 5.50 86.38 0.48 9.96 16 11 N -0.72 -28.64 5.47 -478.55 -2.62 -31.26 16 12 C 0.69 27.77 8.56 179.05 1.53 29.30 16 13 O -0.65 -31.99 16.02 -3.99 -0.06 -32.05 16 14 N -0.73 -21.03 5.14 -458.12 -2.35 -23.38 16 15 C 0.18 4.58 3.21 44.93 0.14 4.72 16 16 H 0.07 2.21 7.60 -2.39 -0.02 2.19 16 17 C -0.20 -5.46 10.40 26.26 0.27 -5.19 16 18 C -0.14 -2.72 10.78 26.26 0.28 -2.44 16 19 C -0.09 -1.27 6.82 30.60 0.21 -1.06 16 20 C -0.12 -1.85 6.89 31.78 0.22 -1.63 16 21 C -0.17 -6.83 9.96 30.62 0.30 -6.53 16 22 C -0.16 -7.30 9.42 30.62 0.29 -7.01 16 23 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 24 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.48 8.09 -2.39 -0.02 1.46 16 26 H 0.41 14.19 8.43 -92.71 -0.78 13.40 16 27 H 0.41 9.13 8.42 -92.71 -0.78 8.35 16 28 H 0.09 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.19 7.81 -2.39 -0.02 1.18 16 34 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 36 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -68.14 315.13 1.11 -67.03 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.49 Total: 30.70 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.34 Total: -3.68 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.69 Total: -106.75 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.06 Total: -32.05 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -68.14 1.11 -67.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852300365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.260 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds