Wall clock time and date at job start Sun Mar 29 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99529 * 2 1 4 4 H 1.48501 * 109.47219 * 240.00052 * 3 2 1 5 5 H 1.48503 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46797 * 119.99825 * 3 2 1 7 7 C 1.37869 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 172.15999 * 7 2 1 9 9 C 1.50697 * 120.00118 * 352.15606 * 7 2 1 10 10 C 1.53003 * 115.54961 * 294.79675 * 9 7 2 11 11 N 1.46509 * 109.46930 * 275.58804 * 10 9 7 12 12 C 1.34778 * 120.00090 * 185.04130 * 11 10 9 13 13 O 1.21584 * 119.99973 * 355.07029 * 12 11 10 14 14 N 1.34770 * 119.99719 * 175.06925 * 12 11 10 15 15 C 1.48145 * 127.83679 * 184.99920 * 14 12 11 16 16 C 1.54394 * 104.61980 * 140.41509 * 15 14 12 17 17 H 1.08994 * 117.61939 * 244.78869 * 16 15 14 18 18 C 1.52998 * 118.11826 * 89.20643 * 16 15 14 19 19 C 1.54292 * 104.95546 * 23.87107 * 16 15 14 20 20 H 1.08997 * 121.81661 * 222.17706 * 19 16 15 21 21 C 1.48149 * 127.84076 * 4.68796 * 14 12 11 22 22 C 1.53000 * 117.51877 * 80.49340 * 9 7 2 23 23 C 1.52999 * 60.00064 * 107.48461 * 22 9 7 24 24 H 0.96997 * 120.00460 * 5.00399 * 1 2 3 25 25 H 1.08994 * 109.47632 * 35.58875 * 10 9 7 26 26 H 1.08998 * 109.47340 * 155.59629 * 10 9 7 27 27 H 0.96998 * 119.99647 * 5.04732 * 11 10 9 28 28 H 1.08997 * 110.41360 * 259.20368 * 15 14 12 29 29 H 1.09008 * 110.40934 * 21.52094 * 15 14 12 30 30 H 1.08996 * 117.44326 * 16.11664 * 18 16 15 31 31 H 1.09000 * 117.44318 * 160.81106 * 18 16 15 32 32 H 1.08999 * 110.40584 * 338.36738 * 21 14 12 33 33 H 1.09001 * 110.40652 * 100.80133 * 21 14 12 34 34 H 1.09002 * 117.49993 * 214.97573 * 22 9 7 35 35 H 1.09000 * 117.50118 * 359.97438 * 22 9 7 36 36 H 1.09005 * 117.49748 * 252.51266 * 23 22 9 37 37 H 1.08997 * 117.51750 * 107.47929 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0770 -1.1982 -0.1281 9 6 1.2618 -2.4930 0.1770 10 6 0.5856 -2.6862 1.5358 11 7 1.5588 -3.2151 2.4948 12 6 1.1625 -3.5613 3.7356 13 8 0.0181 -3.3518 4.0889 14 7 2.0347 -4.1399 4.5846 15 6 1.7641 -4.6788 5.9378 16 6 2.6034 -5.9723 6.0171 17 1 2.0680 -6.9172 6.1091 18 6 4.0426 -5.8680 6.5258 19 6 3.7358 -5.7759 4.9877 20 1 4.0536 -6.5790 4.3228 21 6 3.4802 -4.3869 4.3740 22 6 0.5620 -3.0806 -1.0502 23 6 1.8353 -3.7343 -0.5095 24 1 -0.4851 0.8368 -0.0733 25 1 0.2073 -1.7284 1.8929 26 1 -0.2419 -3.3883 1.4334 27 1 2.4883 -3.3160 2.2367 28 1 2.0856 -3.9698 6.7007 29 1 0.7038 -4.9042 6.0522 30 1 4.3235 -4.9575 7.0550 31 1 4.5173 -6.7826 6.8811 32 1 3.7133 -4.3940 3.3093 33 1 4.0738 -3.6315 4.8890 34 1 -0.3801 -3.6048 -0.8895 35 1 0.6384 -2.5274 -1.9862 36 1 2.7497 -3.6112 -1.0899 37 1 1.7312 -4.6884 0.0071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888939377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:02 Heat of formation + Delta-G solvation = 36.315939 kcal Electronic energy + Delta-G solvation = -18435.091821 eV Core-core repulsion = 15600.530678 eV Total energy + Delta-G solvation = -2834.561143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15289 -38.25154 -36.62878 -33.47965 -32.82884 -32.02894 -28.53938 -26.86971 -25.61733 -24.38067 -21.66218 -21.21763 -20.19945 -19.40183 -19.29855 -17.82108 -16.13422 -15.84611 -15.39499 -15.18171 -14.65554 -14.02632 -13.90194 -13.52781 -13.29927 -12.65980 -12.64226 -12.19225 -11.82412 -11.68039 -11.54805 -11.49303 -10.96277 -10.91432 -10.53219 -10.31817 -10.30733 -10.18635 -9.66269 -9.43318 -9.03637 -8.60859 -8.57714 -8.21460 -7.94774 -6.06578 -4.13494 2.99355 3.28600 3.30012 3.34990 3.36046 3.70882 4.36604 4.41509 4.48444 4.50547 4.80215 4.99756 5.06079 5.16345 5.38712 5.41436 5.50083 5.64172 5.78564 5.81637 5.95942 5.99594 6.01863 6.28944 6.35224 6.47840 6.62749 6.68441 6.91324 7.05810 7.32591 7.42513 7.54120 7.60797 7.85593 8.35727 8.59129 8.85697 9.19125 9.51358 11.01228 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.005588 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.988861 B = 5009.133161 C = 5224.258896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.181 3.819 11 N -0.723 5.723 12 C 0.721 3.279 13 O -0.596 6.596 14 N -0.647 5.647 15 C 0.151 3.849 16 C -0.173 4.173 17 H 0.116 0.884 18 C -0.142 4.142 19 C -0.178 4.178 20 H 0.121 0.879 21 C 0.130 3.870 22 C -0.164 4.164 23 C -0.208 4.208 24 H 0.263 0.737 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.393 0.607 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 -10.608 9.465 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.034 3.966 10 C 0.058 3.942 11 N -0.376 5.376 12 C 0.424 3.576 13 O -0.475 6.475 14 N -0.387 5.387 15 C 0.027 3.973 16 C -0.192 4.192 17 H 0.134 0.866 18 C -0.180 4.180 19 C -0.198 4.198 20 H 0.139 0.861 21 C 0.007 3.993 22 C -0.202 4.202 23 C -0.246 4.246 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.227 0.773 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.954 -10.217 9.639 15.673 hybrid contribution 0.875 0.738 -0.277 1.178 sum 7.829 -9.478 9.362 15.453 Atomic orbital electron populations 1.69952 1.05907 1.27160 1.47938 1.24982 0.94804 0.98984 0.94352 0.86674 0.79669 0.83142 0.78603 1.20274 1.21212 1.20177 1.20371 0.93131 0.88763 1.51544 0.92195 1.19078 0.97703 0.91424 0.88402 1.20914 0.88263 0.97841 0.87173 1.45324 1.13342 1.67955 1.10989 1.15487 0.83448 0.78270 0.80419 1.90885 1.18147 1.61623 1.76878 1.48356 1.08609 1.64411 1.17308 1.21501 1.00290 0.91967 0.83536 1.23729 0.90699 0.99917 1.04882 0.86556 1.23659 0.96713 1.03384 0.94201 1.24245 1.05072 0.99066 0.91388 0.86101 1.21616 0.82295 0.94227 1.01176 1.22704 0.93330 1.03589 1.00582 1.22876 0.97822 0.96964 1.06903 0.92673 0.90281 0.94434 0.77322 0.91498 0.89648 0.88487 0.88006 0.89987 0.91078 0.91635 0.89948 0.90412 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.67 12.60 55.43 0.70 -23.97 16 2 C 0.07 1.97 5.22 -17.82 -0.09 1.88 16 3 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.50 -13.15 8.82 -34.44 -0.30 -13.45 16 8 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 9 C 0.03 0.83 1.32 -155.66 -0.21 0.63 16 10 C 0.18 4.35 5.51 -4.04 -0.02 4.33 16 11 N -0.72 -14.91 5.44 -65.22 -0.35 -15.27 16 12 C 0.72 14.92 8.56 -86.92 -0.74 14.17 16 13 O -0.60 -14.70 16.65 5.29 0.09 -14.62 16 14 N -0.65 -10.27 3.32 -175.26 -0.58 -10.85 16 15 C 0.15 1.96 6.83 -2.41 -0.02 1.95 16 16 C -0.17 -1.73 6.99 -89.21 -0.62 -2.35 16 17 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.14 -1.12 10.30 -24.50 -0.25 -1.37 16 19 C -0.18 -1.74 7.28 -87.20 -0.64 -2.38 16 20 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 21 C 0.13 1.57 6.76 -2.62 -0.02 1.55 16 22 C -0.16 -3.74 9.88 -26.73 -0.26 -4.00 16 23 C -0.21 -4.31 9.78 -26.73 -0.26 -4.57 16 24 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 25 H 0.08 2.19 7.26 -51.93 -0.38 1.82 16 26 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 27 H 0.39 7.28 6.79 -40.82 -0.28 7.00 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.21 7.92 -51.92 -0.41 0.80 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.97 6.81 -51.93 -0.35 0.61 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 35 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -30.85 310.30 -9.53 -40.38 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.60 Total: 7.40 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.44 Total: -3.61 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.24 Total: -50.09 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.85 -9.53 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888939377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.696 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds