Wall clock time and date at job start Sun Mar 29 2020 22:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99529 * 2 1 4 4 H 1.48501 * 109.47219 * 240.00052 * 3 2 1 5 5 H 1.48503 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46797 * 119.99825 * 3 2 1 7 7 C 1.37869 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 172.15999 * 7 2 1 9 9 C 1.50697 * 120.00118 * 352.15606 * 7 2 1 10 10 C 1.53003 * 115.54961 * 294.79675 * 9 7 2 11 11 N 1.46509 * 109.46930 * 275.58804 * 10 9 7 12 12 C 1.34778 * 120.00090 * 185.04130 * 11 10 9 13 13 O 1.21584 * 119.99973 * 355.07029 * 12 11 10 14 14 N 1.34770 * 119.99719 * 175.06925 * 12 11 10 15 15 C 1.48145 * 127.83679 * 184.99920 * 14 12 11 16 16 C 1.54394 * 104.61980 * 140.41509 * 15 14 12 17 17 H 1.08994 * 117.61939 * 244.78869 * 16 15 14 18 18 C 1.52998 * 118.11826 * 89.20643 * 16 15 14 19 19 C 1.54292 * 104.95546 * 23.87107 * 16 15 14 20 20 H 1.08997 * 121.81661 * 222.17706 * 19 16 15 21 21 C 1.48149 * 127.84076 * 4.68796 * 14 12 11 22 22 C 1.53000 * 117.51877 * 80.49340 * 9 7 2 23 23 C 1.52999 * 60.00064 * 107.48461 * 22 9 7 24 24 H 0.96997 * 120.00460 * 5.00399 * 1 2 3 25 25 H 1.08994 * 109.47632 * 35.58875 * 10 9 7 26 26 H 1.08998 * 109.47340 * 155.59629 * 10 9 7 27 27 H 0.96998 * 119.99647 * 5.04732 * 11 10 9 28 28 H 1.08997 * 110.41360 * 259.20368 * 15 14 12 29 29 H 1.09008 * 110.40934 * 21.52094 * 15 14 12 30 30 H 1.08996 * 117.44326 * 16.11664 * 18 16 15 31 31 H 1.09000 * 117.44318 * 160.81106 * 18 16 15 32 32 H 1.08999 * 110.40584 * 338.36738 * 21 14 12 33 33 H 1.09001 * 110.40652 * 100.80133 * 21 14 12 34 34 H 1.09002 * 117.49993 * 214.97573 * 22 9 7 35 35 H 1.09000 * 117.50118 * 359.97438 * 22 9 7 36 36 H 1.09005 * 117.49748 * 252.51266 * 23 22 9 37 37 H 1.08997 * 117.51750 * 107.47929 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0770 -1.1982 -0.1281 9 6 1.2618 -2.4930 0.1770 10 6 0.5856 -2.6862 1.5358 11 7 1.5588 -3.2151 2.4948 12 6 1.1625 -3.5613 3.7356 13 8 0.0181 -3.3518 4.0889 14 7 2.0347 -4.1399 4.5846 15 6 1.7641 -4.6788 5.9378 16 6 2.6034 -5.9723 6.0171 17 1 2.0680 -6.9172 6.1091 18 6 4.0426 -5.8680 6.5258 19 6 3.7358 -5.7759 4.9877 20 1 4.0536 -6.5790 4.3228 21 6 3.4802 -4.3869 4.3740 22 6 0.5620 -3.0806 -1.0502 23 6 1.8353 -3.7343 -0.5095 24 1 -0.4851 0.8368 -0.0733 25 1 0.2073 -1.7284 1.8929 26 1 -0.2419 -3.3883 1.4334 27 1 2.4883 -3.3160 2.2367 28 1 2.0856 -3.9698 6.7007 29 1 0.7038 -4.9042 6.0522 30 1 4.3235 -4.9575 7.0550 31 1 4.5173 -6.7826 6.8811 32 1 3.7133 -4.3940 3.3093 33 1 4.0738 -3.6315 4.8890 34 1 -0.3801 -3.6048 -0.8895 35 1 0.6384 -2.5274 -1.9862 36 1 2.7497 -3.6112 -1.0899 37 1 1.7312 -4.6884 0.0071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888939377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:02 Heat of formation + Delta-G solvation = 17.443544 kcal Electronic energy + Delta-G solvation = -18435.910190 eV Core-core repulsion = 15600.530678 eV Total energy + Delta-G solvation = -2835.379511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.41327 -39.61885 -38.40322 -35.08090 -34.18609 -33.99794 -29.55725 -28.43741 -27.44877 -25.89452 -23.04599 -22.43505 -21.28812 -20.98959 -20.85726 -19.28367 -17.95481 -17.07204 -16.88314 -16.59161 -16.38349 -15.69983 -15.37158 -14.83040 -14.71383 -14.42524 -13.75136 -13.56820 -13.35064 -13.22623 -12.93607 -12.78608 -12.60424 -12.42560 -12.38229 -12.06595 -11.59337 -11.35351 -11.03313 -10.96282 -10.74581 -10.52337 -10.16371 -10.07845 -9.49573 -8.11190 -6.22849 1.42012 1.44744 1.50938 1.60709 2.12309 2.41711 2.55529 3.06381 3.17513 3.55559 3.58197 3.66897 3.94507 4.15197 4.20906 4.29069 4.50150 4.53203 4.62745 4.66415 4.76371 4.77874 4.92094 4.94525 4.99486 5.06113 5.18341 5.22308 5.25375 5.30685 5.55521 5.57064 5.68449 5.80838 6.12638 6.35559 6.81923 7.05686 7.44897 7.59151 8.96393 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.005588 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.988861 B = 5009.133161 C = 5224.258896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.007 3.993 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.715 3.285 13 O -0.646 6.646 14 N -0.646 5.646 15 C 0.141 3.859 16 C -0.179 4.179 17 H 0.126 0.874 18 C -0.113 4.113 19 C -0.181 4.181 20 H 0.135 0.865 21 C 0.122 3.878 22 C -0.173 4.173 23 C -0.170 4.170 24 H 0.260 0.740 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.404 0.596 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -12.041 10.229 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.007 3.993 10 C 0.076 3.924 11 N -0.370 5.370 12 C 0.417 3.583 13 O -0.529 6.529 14 N -0.384 5.384 15 C 0.019 3.981 16 C -0.198 4.198 17 H 0.144 0.856 18 C -0.150 4.150 19 C -0.200 4.200 20 H 0.153 0.847 21 C 0.000 4.000 22 C -0.211 4.211 23 C -0.207 4.207 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.240 0.760 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.850 -11.687 10.423 18.500 hybrid contribution 0.025 1.136 -0.454 1.224 sum 9.875 -10.551 9.969 17.556 Atomic orbital electron populations 1.70085 1.07358 1.27546 1.49521 1.25721 0.95452 1.02201 0.94353 0.85728 0.78417 0.79305 0.78885 1.19128 1.21617 1.19863 1.20698 0.93410 0.89815 1.50504 0.91854 1.19059 0.99284 0.92493 0.88502 1.20405 0.88734 0.95311 0.87959 1.45052 1.13273 1.67929 1.10783 1.15666 0.83473 0.78399 0.80738 1.90840 1.20623 1.63628 1.77844 1.48428 1.09819 1.62746 1.17437 1.21724 1.00084 0.94007 0.82303 1.23660 0.91300 0.98414 1.06443 0.85614 1.23807 0.94056 1.04937 0.92157 1.24271 1.05316 0.97721 0.92707 0.84683 1.21896 0.79740 0.96375 1.01991 1.22667 0.94864 1.04144 0.99466 1.22878 0.96939 0.96188 1.04693 0.93091 0.94816 0.95587 0.75962 0.90312 0.91681 0.87786 0.85383 0.89768 0.89791 0.91244 0.91218 0.89097 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.70 12.60 21.44 0.27 -52.43 16 2 C 0.02 1.28 5.22 84.65 0.44 1.72 16 3 Si 0.95 43.05 29.55 68.60 2.03 45.08 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.51 -26.55 8.82 25.60 0.23 -26.32 16 8 H 0.06 3.20 7.83 -2.91 -0.02 3.17 16 9 C 0.01 0.36 1.32 -52.93 -0.07 0.29 16 10 C 0.20 9.90 5.51 86.38 0.48 10.38 16 11 N -0.72 -29.73 5.44 -478.53 -2.60 -32.33 16 12 C 0.72 30.07 8.56 179.06 1.53 31.60 16 13 O -0.65 -33.21 16.65 -3.98 -0.07 -33.27 16 14 N -0.65 -20.07 3.32 -826.67 -2.74 -22.82 16 15 C 0.14 3.56 6.83 86.54 0.59 4.15 16 16 C -0.18 -3.08 6.99 -9.88 -0.07 -3.15 16 17 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 18 C -0.11 -1.28 10.30 32.04 0.33 -0.95 16 19 C -0.18 -2.91 7.28 -8.58 -0.06 -2.97 16 20 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 21 C 0.12 2.66 6.76 86.40 0.58 3.24 16 22 C -0.17 -7.86 9.88 30.59 0.30 -7.56 16 23 C -0.17 -6.68 9.78 30.59 0.30 -6.38 16 24 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 25 H 0.03 1.96 7.26 -2.39 -0.02 1.94 16 26 H 0.03 1.31 7.91 -2.39 -0.02 1.29 16 27 H 0.40 14.62 6.79 -92.71 -0.63 13.99 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.89 7.92 -2.38 -0.02 1.87 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.79 6.81 -2.39 -0.02 1.77 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 3.05 8.06 -2.39 -0.02 3.03 16 35 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -68.66 310.30 1.90 -66.76 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.43 Total: 24.97 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 4.58 Total: 4.04 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -5.08 Total: -107.57 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.07 Total: -33.27 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.66 1.90 -66.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888939377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.201 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds