Wall clock time and date at job start Sun Mar 29 2020 22:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99653 * 2 1 4 4 H 1.48493 * 109.47418 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46957 * 120.00482 * 3 2 1 6 6 H 1.48496 * 109.47590 * 240.00029 * 3 2 1 7 7 C 1.38811 * 120.00115 * 180.28142 * 2 1 3 8 8 H 1.07996 * 119.99736 * 208.44372 * 7 2 1 9 9 N 1.36936 * 120.00309 * 28.44809 * 7 2 1 10 10 C 1.47425 * 125.64754 * 19.18399 * 9 7 2 11 11 C 1.55129 * 104.72388 * 155.82069 * 10 9 7 12 12 C 1.55161 * 101.48184 * 37.29428 * 11 10 9 13 13 H 1.08993 * 110.71514 * 205.96884 * 12 11 10 14 14 N 1.46502 * 110.87222 * 82.76955 * 12 11 10 15 15 C 1.34770 * 120.00149 * 159.93282 * 14 12 11 16 16 O 1.21618 * 120.00002 * 359.97438 * 15 14 12 17 17 C 1.47100 * 120.00354 * 180.02562 * 15 14 12 18 18 C 1.32614 * 124.61981 * 180.02562 * 17 15 14 19 19 C 1.51122 * 110.75440 * 180.02562 * 18 17 15 20 20 C 1.54576 * 104.84220 * 16.59859 * 19 18 17 21 21 C 1.51116 * 124.61878 * 359.72452 * 17 15 14 22 22 C 1.47015 * 125.65041 * 199.49623 * 9 7 2 23 23 H 0.97002 * 119.99472 * 185.65980 * 1 2 3 24 24 H 1.09007 * 110.36577 * 274.75060 * 10 9 7 25 25 H 1.09002 * 110.36795 * 37.06696 * 10 9 7 26 26 H 1.09002 * 111.18735 * 279.19145 * 11 10 9 27 27 H 1.09002 * 110.93538 * 155.28657 * 11 10 9 28 28 H 0.96999 * 119.99868 * 339.93262 * 14 12 11 29 29 H 1.07994 * 124.62401 * 359.97438 * 18 17 15 30 30 H 1.08994 * 110.36328 * 135.44397 * 19 18 17 31 31 H 1.08994 * 110.36267 * 257.75814 * 19 18 17 32 32 H 1.08994 * 110.98270 * 93.06962 * 20 19 18 33 33 H 1.08997 * 110.98312 * 216.83466 * 20 19 18 34 34 H 1.09000 * 110.36381 * 282.24020 * 21 17 15 35 35 H 1.08997 * 110.36099 * 44.55720 * 21 17 15 36 36 H 1.09005 * 109.88112 * 300.43830 * 22 9 7 37 37 H 1.09002 * 109.88578 * 61.59898 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2124 7 6 2.0103 -1.2021 -0.0059 8 1 2.9925 -1.2607 0.4393 9 7 1.4497 -2.3137 -0.5763 10 6 0.3396 -2.3145 -1.5464 11 6 0.4961 -3.6480 -2.3235 12 6 0.9626 -4.6086 -1.1978 13 1 1.5422 -5.4340 -1.6110 14 7 -0.1816 -5.1124 -0.4342 15 6 -0.0601 -6.2368 0.2989 16 8 0.9993 -6.8334 0.3260 17 6 -1.2092 -6.7430 1.0652 18 6 -1.1917 -7.8365 1.8152 19 6 -2.5390 -8.0649 2.4605 20 6 -3.5177 -7.1768 1.6587 21 6 -2.5684 -6.0842 1.1103 22 6 1.8509 -3.7042 -0.3178 23 1 -0.4849 -0.8360 0.0829 24 1 -0.6182 -2.2857 -1.0268 25 1 0.4291 -1.4670 -2.2260 26 1 1.2530 -3.5630 -3.1033 27 1 -0.4579 -3.9696 -2.7412 28 1 -1.0267 -4.6367 -0.4561 29 1 -0.3321 -8.4770 1.9463 30 1 -2.8253 -9.1135 2.3798 31 1 -2.5162 -7.7564 3.5056 32 1 -3.9814 -7.7397 0.8487 33 1 -4.2740 -6.7414 2.3117 34 1 -2.5504 -5.2227 1.7777 35 1 -2.8774 -5.7833 0.1092 36 1 2.8990 -3.8430 -0.5830 37 1 1.6976 -3.9449 0.7342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010539932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:03 Heat of formation + Delta-G solvation = -26.856911 kcal Electronic energy + Delta-G solvation = -18426.517010 eV Core-core repulsion = 15589.216487 eV Total energy + Delta-G solvation = -2837.300523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27298 -39.49082 -38.41105 -35.72122 -33.78459 -31.12270 -30.38887 -29.51833 -28.68452 -26.34495 -23.76759 -22.18820 -21.98377 -21.28571 -19.93821 -19.51279 -18.19901 -17.51395 -16.56107 -16.47888 -15.93135 -15.83436 -15.53104 -15.22482 -14.89154 -14.03721 -13.74441 -13.64455 -13.63302 -12.99715 -12.65796 -12.64328 -12.62551 -12.49587 -12.31242 -12.09399 -12.02549 -11.98514 -11.89067 -11.61890 -11.04957 -10.54534 -10.27136 -9.87746 -9.05325 -8.36977 -5.39582 0.33850 1.56731 1.64084 1.84033 2.10576 2.24798 2.61494 3.14546 3.42418 3.51468 3.58929 3.64138 3.88042 4.06000 4.13623 4.19140 4.28773 4.41888 4.49017 4.72092 4.76536 4.78623 4.83936 4.87788 4.88854 4.95456 5.01090 5.15754 5.21645 5.31821 5.35683 5.48332 5.51620 5.64089 6.29000 6.47780 6.86546 7.13247 7.65575 8.23945 8.94208 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.005165 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.485261 B = 5419.514922 C = 5753.147421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.070 4.070 3 Si 1.116 2.884 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.356 4.356 8 H 0.050 0.950 9 N -0.620 5.620 10 C 0.145 3.855 11 C -0.120 4.120 12 C 0.143 3.857 13 H 0.101 0.899 14 N -0.701 5.701 15 C 0.558 3.442 16 O -0.589 6.589 17 C -0.218 4.218 18 C -0.066 4.066 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.092 4.092 22 C 0.125 3.875 23 H 0.256 0.744 24 H 0.014 0.986 25 H 0.027 0.973 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.408 0.592 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.029 0.971 37 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -14.644 -0.112 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.267 4.267 3 Si 0.940 3.060 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.485 4.485 8 H 0.068 0.932 9 N -0.347 5.347 10 C 0.020 3.980 11 C -0.159 4.159 12 C 0.038 3.962 13 H 0.119 0.881 14 N -0.351 5.351 15 C 0.349 3.651 16 O -0.472 6.472 17 C -0.221 4.221 18 C -0.086 4.086 19 C -0.139 4.139 20 C -0.152 4.152 21 C -0.129 4.129 22 C -0.002 4.002 23 H 0.066 0.934 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.245 0.755 29 H 0.148 0.852 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -8.082 -13.322 -0.138 15.583 hybrid contribution 0.315 -1.188 0.381 1.287 sum -7.767 -14.510 0.243 16.460 Atomic orbital electron populations 1.70909 1.07403 1.29389 1.50087 1.27169 0.96543 1.04284 0.98675 0.82844 0.73918 0.71956 0.77259 1.21226 1.20430 1.20569 1.19970 0.99491 0.89976 1.39015 0.93201 1.44805 1.40754 1.00923 1.48244 1.21562 0.90134 0.96061 0.90258 1.23077 1.03587 0.93091 0.96134 1.21766 0.87406 0.95561 0.91488 0.88140 1.45824 1.15091 1.26045 1.48149 1.18584 0.87997 0.79946 0.78598 1.90732 1.30716 1.60015 1.65734 1.21909 0.96064 1.00551 1.03604 1.24379 0.99688 0.93677 0.90875 1.21559 0.89930 1.02313 1.00093 1.22480 0.96908 0.95624 1.00215 1.21338 0.90070 0.99020 1.02516 1.21796 0.96915 0.85371 0.96070 0.93394 0.96827 0.95485 0.88660 0.87461 0.75533 0.85170 0.88026 0.88530 0.89654 0.88894 0.90896 0.90208 0.95284 0.98274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.21 13.00 21.65 0.28 -56.93 16 2 C -0.07 -4.07 5.09 84.86 0.43 -3.64 16 3 Si 1.12 51.81 30.00 68.60 2.06 53.87 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.36 -21.07 10.00 84.03 0.84 -20.23 16 8 H 0.05 3.00 7.97 -2.91 -0.02 2.98 16 9 N -0.62 -32.74 3.26 -691.56 -2.26 -35.00 16 10 C 0.14 6.60 5.36 86.93 0.47 7.07 16 11 C -0.12 -3.98 6.66 32.06 0.21 -3.77 16 12 C 0.14 5.18 3.24 46.18 0.15 5.33 16 13 H 0.10 3.50 7.69 -2.39 -0.02 3.48 16 14 N -0.70 -23.14 5.11 -440.52 -2.25 -25.39 16 15 C 0.56 19.21 7.79 86.57 0.67 19.88 16 16 O -0.59 -24.41 16.49 -4.09 -0.07 -24.48 16 17 C -0.22 -5.76 6.09 -18.57 -0.11 -5.87 16 18 C -0.07 -1.47 10.43 24.66 0.26 -1.21 16 19 C -0.10 -1.44 6.80 30.52 0.21 -1.24 16 20 C -0.11 -1.57 7.17 31.74 0.23 -1.35 16 21 C -0.09 -1.85 6.04 30.59 0.18 -1.67 16 22 C 0.12 5.80 6.98 86.73 0.61 6.40 16 23 H 0.26 15.75 6.19 -92.71 -0.57 15.18 16 24 H 0.01 0.66 6.81 -2.38 -0.02 0.65 16 25 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 26 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.41 12.05 7.62 -92.71 -0.71 11.34 16 29 H 0.13 2.99 8.03 -2.91 -0.02 2.97 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.46 7.82 -2.39 -0.02 1.44 16 36 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.00 -0.04 8.04 -2.39 -0.02 -0.06 16 Total: -1.00 -74.20 304.24 2.46 -71.74 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.55 Total: 16.48 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.15 Total: -0.29 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -4.23 Total: -117.31 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.06 Total: 53.87 kcal Total: -74.20 2.46 -71.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010539932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.883 kcal (2) G-P(sol) polarization free energy of solvation -74.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds